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CAS No. : | 37860-51-8 | MDL No. : | MFCD00075239 |
Formula : | C22H30O9S2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | SLAONPBUWDUSSO-UHFFFAOYSA-N |
M.W : | 502.60 | Pubchem ID : | 3706987 |
Synonyms : |
PROTAC Linker 16
|
Num. heavy atoms : | 33 |
Num. arom. heavy atoms : | 12 |
Fraction Csp3 : | 0.45 |
Num. rotatable bonds : | 16 |
Num. H-bond acceptors : | 9.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 121.16 |
TPSA : | 131.19 Ų |
GI absorption : | Low |
BBB permeant : | No |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | Yes |
CYP2C9 inhibitor : | Yes |
CYP2D6 inhibitor : | Yes |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.61 cm/s |
Log Po/w (iLOGP) : | 4.71 |
Log Po/w (XLOGP3) : | 2.47 |
Log Po/w (WLOGP) : | 4.63 |
Log Po/w (MLOGP) : | 2.04 |
Log Po/w (SILICOS-IT) : | 3.06 |
Consensus Log Po/w : | 3.38 |
Lipinski : | 1.0 |
Ghose : | None |
Veber : | 1.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -3.73 |
Solubility : | 0.0946 mg/ml ; 0.000188 mol/l |
Class : | Soluble |
Log S (Ali) : | -4.87 |
Solubility : | 0.00679 mg/ml ; 0.0000135 mol/l |
Class : | Moderately soluble |
Log S (SILICOS-IT) : | -7.3 |
Solubility : | 0.0000252 mg/ml ; 0.0000000502 mol/l |
Class : | Poorly soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 4.0 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | at 40℃; for 1 h; Inert atmosphere; Glovebox | A 3 L, three-neck round bottom flask was charged with a magnetic stir bar, 1.50 L tBuOH, andKOtBu (30.7 g, 274 mmol). The mixture was warmed to 40°C stirred for 30 min to dissolve theKOtBu, and then tetraethylene glycol di(toluene-p-sulphonate) (46 g, 91.5 mmol, in 100 mLdioxane) and diethanolamine (9.6 g, 91.3 mmol, in 100 mL tBuOH) were added dropwise(simultaneously from two different dropping funnels) over the course of 2 h. Note: Slow additionof the solutions is crucial; the slower the addition, the higher the yield After addition, the reactionmixture was stirred for 1h and allowed to cool. The reaction mixture was then filtered twicethrough a Büchner funnel and the solvent was removed on a rotary evaporator. Deionized water(100 mL) was added to the brown, sticky residue and the resulting solution was first extracted withhexane (1×60 mL, hexane phase discarded), followed by CH2Cl2 (5×60 mL). The CH2Cl2 phaseswere collected, dried over MgSO4, and solvent was removed on a rotary evaporator. The resultingdark brown residue was distilled through a bulb-to-bulb distillation under high static vacuum usinga heat gun to yield the product as a colorless liquid (8.4 g, 35percent). The NMR spectra are consistentwith published data. We have found that the tBuOH used in this preparation can be distilled andre-used for subsequent azacrown syntheses despite the presence of small amounts of dioxane(<5percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35.9% | With triethylamine In acetonitrile at 0 - 25℃; for 1 h; Cooling with ice | 20.0 g of triethylene glycol and 10.2 g of triethylamine were charged into a reaction flask, 300 ml of acetonitrile was added thereto, and the mixture was cooled in an ice bathTo 0-5 ° C, 19.0gTsCl dissolved in 100ml acetonitrile slowly dripping into the solution, 1h drops finished, finished after the drop to 20-25Deg.] C for 12-14 h, the solvent was removed by rotary column chromatography, and eluted with n-hexane: ethyl acetate volume ratio= 4: 1 and 1.5: 1 gradient elution, in n-hexane: ethyl acetate volume ratio = 4: 1 eluentTo give 12.9 g of an oily product (compound thirteen) in a yield of 35.9percent in n-hexane: ethyl acetate volume ratio = 1.5: 1To give 5.4 g of an oil (Compound 14) in a yield of 10.4percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With potassium hydroxide In dichloromethane at 0 - 10℃; for 3 h; | General procedure: Compounds 2a–c were prepared by a modified procedure known from the literature1. Oligo ethylene glycol(37.7 mmol) and p-toluenesulfonyl chloride (14.4 g, 75.4 mmol, 2 equiv) were dissolved in dichloromethane (36 mL)and this solution was cooled to 0 °C. During permanent stirring, milled potassium hydroxide (17 g, 302 mmol, 8equiv) was added and the solution was then stirred for 3 hours while the temperature was kept from 0 to 10 °C. This reaction was monitored by TLC (UV detection). After warming up to room temperature the reaction mixture was diluted by chloroform and extracted with water (3 × 1:1). Chloroform extracts were collected, dried over magnesium sulfate overnight, filtered and solvents were evaporated under reduced pressure. |
98% | With potassium hydroxide In dichloromethane for 1.5 h; Cooling with ice | The 10mL (0.068mol) of tetraethylene glycol,300ml dichloromethane,25.8g (0.136mol)MethylBenzenesulfonyl chloride,Added to a 500ml round-bottomed flask,Under ice-cooling,Was slowly added 30.4g (0.544mol) of potassium hydroxide,1.5h the reaction is substantially complete.The reaction solution was washed three times with water (3 × 100ml),The organic layer was collected,Dried over anhydrous sodium sulfate.filter,Spin dry solvent,To give the crude product as an oil.Column chromatography (petroleum ether: ethyl acetate = 1:4) to give a pale yellow oily liquid 34g.The yield was 98percent. |
95% | With 1H-imidazole; triethylamine In dichloromethane at 0 - 20℃; | 0-Ditosylate Tetraethylne Glycol (32). Compound 2 (5.00 mL, 28.95 mmol) was added dropwise to a stirred solution of /Moluenesulfonyl chloride (12.15 g, 63.73 mmol), imidazole (0.04 g, 0.65 mmol) and Et3N (16.15 mL, 108.30 mmol) in CH2Cl2 (30 mL) at 0 0C. The reaction mixture was allowed to stir at room temperature (12 h), and then Et2O (80 mL) was added and the reaction washed with H2O (5 x 60 mL). The organic layer was dried (Na2SO4) and evaporated in vacuo, and then the crude product was purified by column chromatography (SiO2; 3/1 EtOAc/hexanes) to yield 13.81 g (95percent) of 32 as a clear oil (Busch et al., 2002): Rf = 0.65 (3/1 EtOAc/hexanes); 1H NMR (CDCl3) δ 2.44 (s, 2 CH3), 3.53-3.59 (m, 2 OCH2CH2O), 3.68 (t, J = 4.8 Hz, OCH2CH2OTs), 4.15 (t, J = 4.8 Hz, OCH2CH2OTs), 7.34 (d, J= 8.4 Hz, 4 ArH), 7.79 (d, J= 8.4 Hz, 4 ArH); 13C NMR (CDCl3) δ 21.7 (CH3), 68.8 , 69.4, 70.6, 70.8 (OCH2CH2O, OCH2CH2OTs), 128.1, 130.1, 133.1, 145.0 (C6H4). |
89% | Stage #1: With potassium hydroxide In dichloromethane at 0 - 20℃; Stage #2: at 20℃; for 10 h; |
General procedure: KOH (20 g, 356.5 mmol for 9; and 10 g, 181.5 mmol for 10–11) was added to 300 mL of a CH2Cl2 solution containing the oligoethylene glycol (10 g,94 mmol for 9, 66.6 mmol for 10, and 51.5 mmol for 11) at 0 °C. After stirring for 30 min at room temperature, TsCl (45 g, 236 mmol for 9–11) was added and the resulting solution was stirred for 10 h at room temperature. The resulting solution was filtered and then washed with aq. K2CO3. The organic layer was dried with MgSO4, filtered, and concentrated in vacuo. The resulting residue was then subjected to silicagel column chromatography (EtOAc:Hex = 1:1) to yield 35 g of 9 (90percent), 27 g of 10 (88percent), and 23 g of 11 (89percent). |
74.4% | With triethylamine In dichloromethane at 0 - 20℃; | To a solution of 2-{2-[2-(2-hydroxyethoxy)ethoxy]ethoxy}ethan-l-ol (13 g, 67.1 mmol), Et3N (13 mL) in DCM (100 mL) was added TsCl (25.5 g, 134.2 mmol) in portions at 0°C. The resulting mixture was allowed to stir at room temperature overnight. TLC showed the reaction completed. The mixture was partitioned between DCM and H20. The organic phase was washed with brine, dried over magnesium sulfate and evaporated to dryness. The crude product was purified by silica gel chromatography using with 10-20percent EtOAc in hexane as eluent to afford the desired compound (25.0 g, 74.4percent). |
73% | With triethylamine In dichloromethane at 25℃; for 12 h; | Tetraethylene glycol (3.88 g, 20 mmol) and triethylamine (TEA) (8.0 mL) were dissolved in dichloromethane (60 mL). Then, tosyl-chloride (9.50 g, 50 mmol) was added in one portion. The resulting mixture was stirred at 25 oC for 12 h. After washing with KHSO4 (1 M, 40 mL) and NaHCO3 (5percent, 40 mL), respectively and drying over Na2SO4, the crude product was obtained by evaporation and subsequently purification by column chromatography over silica gel (dichloromethane) to obtain the target product 7 as a colorless oil (7.5 g, 14.6 mmol, 73percent). |
73% | With potassium hydroxide In tetrahydrofuran; water at 0 - 20℃; for 18 h; Inert atmosphere; Glovebox | A 1 L round bottom flask, charged with a magnetic stir bar, THF (400 mL), ptoluenesulfonylchloride(165.6 g, 0.868 mol) and tetraethylene glycol (56.4 g, 0.290 mol). Theflask was cooled to 0°C and a solution of KOH (104.8 g in 100 mL water, 1.87 mol) was addeddropwise through a dropping funnel over the course of 3 h. After addition, the mixture was allowedto stand at ambient temperature for 18 h. At this stage, the reaction mixture had generated a whiteprecipitate. The reaction was poured into 600 mL of water/CH2Cl2 mixture (70/30). The two-phasesolvent system was separated, and the aqueous phase was extracted four times with 100 mLCH2Cl2. Note: Before extraction the aqueous phase is denser than CH2Cl2. The organic phaseswere combined, dried over MgSO4 and solvent was evaporated under reduced pressure to yield acolorless oil. (53.3 g, 73percent). The NMR spectra are consistent with published data. |
58% | With triethylamine In dichloromethane at 0 - 20℃; for 6 h; | Under room temperature, the methyl sulfonyl chloride (29.5g, 155mmol) by adding 2,2 ' - ((oxygen dihydrogenmethylenebisphosphonate (ethane -2,1-diyl)) double (oxy)) b ethanol 20a (10.0g, 51 . 5mmol) in dichloromethane (150 ml) solution, in 0 °C next, add triethylamine (32.6 ml, 232mmol), stirring 5 minutes, to the reaction room temperature for 6 hours. Added to the reaction solution 100 ml water quenching reaction, separation, of sequentially separated organic phase is washed with water (100 ml), saturated salt water washing (100 ml), then dried with anhydrous sodium sulfate, filtered, filtrate concentrated. The resulting residue is purified by silica gel column chromatography [petroleum ether/ethyl acetate (v/v)=10/1], to obtain title compound 20b (15g, pale yellow liquid), yield: 58.0percent. |
43% | With dmap In dichloromethane at 5 - 20℃; | Into a 250-mL 3-necked round-bottom flask, was placed a solution of tetraethylene glycol (10 g, 51 55 mmol, 1 00 equiv) in DCM (100 mL) This was followed by the addition of a solution of 4-methylbenzene-l-sulfonyl chloride (21 4 g, 112 63 mmol, 2 20 equiv) in DCM (50 mL) dropwise with stirring at 5°C To this was added N,N-dimethylpyridin-4-amine (15 7 g, 128 69 mmol, 2 50 equiv) The resulting solution was stirred for 2 h at room temperature at which time it was diluted with 100 mL of water The resulting solution was extracted with 3x100 mL of DCM and the organic layers combined The resulting mixture was washed with 1x100 mL of brine and then concentrated under vacuum The residue was applied onto a silica gel column and eluted with ethyl acetate/petroleum ether (1 2) to afford H g (43percent) of the title compound as white oil. |
21.4 g | at 0 - 10℃; for 2 h; | Example 4 19.1 g paratoluensulfonyl chloride and 40 mL pyridine are added in 250 mL three-neck flask, and cooled to 0° C. 9.7 g HO-PEG(n=4)-OH is mixed uniformly with 20 mL pyridine, and then dripped in the three-neck flash, and the temperature is controlled between 0 and 10° C. Stirring and reaction is continued at this temperature for two hours. TLC monitors that the reaction is complete. 300 mL cold water and 60 mL concentrated hydrochloric acid are added in the reaction liquid and slowly stirred for half an hour, then the reaction liquid is transferred into a 500 mL separating funnel, acetic ether is added to extract twice (300 mL+200 mL). The organic layers are merged and washed by water to neutrality, dried by anhydrous sodium sulfate for two hours. A rotary evaporator evaporates out solvent to obtain 21.4 g viscous liquid, which will be directly used for next reaction. |
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