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CAS No. : | 5993-91-9 | MDL No. : | MFCD00150073 |
Formula : | C8H11Cl2N3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | HAEYZZSSSUIZAN-UHFFFAOYSA-N |
M.W : | 220.10 | Pubchem ID : | 2723957 |
Synonyms : |
|
Num. heavy atoms : | 13 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.12 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 57.7 |
TPSA : | 54.7 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.17 cm/s |
Log Po/w (iLOGP) : | 0.0 |
Log Po/w (XLOGP3) : | 2.07 |
Log Po/w (WLOGP) : | 2.47 |
Log Po/w (MLOGP) : | 1.06 |
Log Po/w (SILICOS-IT) : | 1.63 |
Consensus Log Po/w : | 1.45 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.96 |
Solubility : | 0.244 mg/ml ; 0.00111 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.85 |
Solubility : | 0.312 mg/ml ; 0.00142 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.94 |
Solubility : | 0.256 mg/ml ; 0.00116 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.52 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H332-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.2 g of polystyrene Wang resin (Rapp-Polymere, Tuebingen; loading 1.08 mmol/g) are swollen in dimethylformamide (DMF). The solvent is filtered off with suction and a solution of 904 mg of (3R,S)-3-(9-fluorenylmethoxycarbonylamino)-3-phenyl-propanoic acid (amino acid reagent) in 9 ml of dimethylformamide (DMF) is added. After shaking at room temperature for 15 min, the suspension is treated with 345 mul of pyridine and 543 mg of 2,6-dichlorobenzoyl chloride. It is shaken overnight at room temperature. The resin is then washed with dimethylformamide (DMF), methanol and dichloromethane. The resin is treated with 15 ml of a 20% strength piperidine solution in dimethylformamide (DMF) and shaken at room temperature for 10 min. It is then washed 3 times with dimethylformamide (DMF) and a further 15 ml of a 20% strength piperidine solution in dimethylformamide (DMF) are added. After shaking for 20 min, it is washed with dimethylformamide (DMF) and tetrahydrofuran (THF). The resin is treated with a solution of 452 ml of diisopropylethylamine in 5 ml of tetrahydrofuran (THF) and a solution of 431 mg of 3-bromobenzenesulfonyl chloride in 5 ml of tetrahydrofuran (THF). It is shaken overnight at room temperature. The resin is then washed with dimethylformamide (DMF), methanol and tetrahydrofuran (THF). The resin is suspended in 9 ml of xylene, treated with 1.55 g of 3-formylbenzeneboronic acid (boronic acid reagent) and a solution of 2.2 g of sodium carbonate in 9 ml of water and shaken for 5 min at room temperature. 227 mg of bis-(triphenylphosphane)-palladium(II) chloride and 170 mg of triphenylphosphane are then added and the mixture is stirred overnight at 85C. The resin is then washed with tetrahydrofuran (THF)/water 1:1, 0.25 M aqueous hydrochloric acid, is then washed with water, dimethylformamide (DMF), methanol, tetrahydrofuran (THF) and dichloromethane. The resin is treated with a solution of 2.16 g of 2-aminomethylbenzimidazole dihydrochloride (amine reagent), 5.1 ml of diisopropylethylamine (for neutralization) and 2.68 ml of trimethyl orthoformate in 8 ml of dimethylformamide (DMF). After shaking at room temperature for 2 h, a solution of 3.14 g of tetrabutylammonium borohydride and 2.8 ml of acetic acid in 18 ml of dimethylformamide (DMF) is added. The mixture is shaken at room temperature overnight. The resin is then filtered off with suction and washed with dimethylformamide (DMF), methanol, tetrahydrofuran (THF) and dichloromethane. For removal of the product, the resin is shaken with 10 ml of trifluoroacetic acid (TFA)/dichloromethane for 1 h, filtered off, and the filtrate is concentrated in vacuo and purified on silica gel. 190 mg of the title compound are obtained. Mass spectrometry (ESI): 541. Retention time (HPLC): Rt = 7.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | To a stirred solution of 6,7-dihydro-8(5/7)-quinolinone (2.00 g, 13.6 mmol, J. Org. Chem., 2002, 67, 2197-2205) in 30 mL of anhydrous MeOH was added 2-(aminomethyl)benzimidazole dihydrochloride (2.99 g, 13.6 mmol, Lancaster). The resulting solution quickly changed color from clear to blue and a solid precipitated shortly thereafter. After 18 hours the suspension was treated with NaBH4 (1.03 g, 27.2 mmol) over a 5 minute period. Two hours following the NaBH4 addition an additional portion of NaBH4 (200 mg, 5.29 mmol) was added and stirring at RT continued. After an additional 2 hours the suspension was concentrated to a volume of approximately 10 mL by rotary evaporation. The mixture was partitioned betweendichloromethane and 10% aqueous Na2C03. The aqueous phase was extracted twice with dichloromethane. The two extracts were combined with the original dichloromethane solution, washed twice with water, dried over Na2S04, and concentrated to dryness at reduced pressure. The crude residue was purified by flash chromatography (silica gel, gradient elution of dichloromethane to 9:1 dichloromethane/2M NH3in MeOH) to afford 2.77 g (74%) of /V-(1 H-benzimidazol-2-ylmethyl)-5,6,7,8-tetrahydro-8-quinolinamine as a yellow foam. 1H NMR (DMSO-cf6): 5 12.39 (brs, 1H), 8.43 (d, 1H), 7.65-7.40 (m, 3H), 7.32-7.09 (m, 3H), 4.12 (s, 2H), 3.79 (t, 2H), 3.39 (s, 1H), 2.79 (m, 2H), 2.10 (m, 1H), 1.99 (m, 1H), 1.69 (m, 2H). MS m/z 279 (M+1). | |
50% | [0118] To a stirred solution of (2-aminomethyl)benzimidazole dihydrochloride hydrate (5.96 g, 27.1 mmol) in dry MeOH (225 mL) was added 6,7-dihydro-5H-quinolin-8-one (3.99 g, 27.1 mmol) and the mixture stirred at room temperature for 69 h. To the resultant solution was added sodium borohydride (2.06 g, 54.2 mmol) in two portions and the mixture stirred for 1.5 h. The reaction mixture was concentrated in vacuo and diluted with CH2Cl2 (150 mL). The organic layer was washed with saturated aqueous sodium bicarbonate (200 mL), the aqueous layer extracted with CH2Cl2 (2×50 mL) and the combined organic layers dried (Na2SO4), filtered, and concentrated in vacuo. Purification by column chromatography on silica gel (CH2Cl2/MeOH, 99:1 followed by 98:2 and 96:4) gave the intermediate amine (3.59 g, 50%) as a yellow foam. 1H NMR (CDCl3) delta 1.66-1.90 (m, 3H), 1.91-2.00 (m, 1H), 2.00-2.17 (m, 1H), 2.33-2.69 (br m, 1H), 3.88-3.96 (m, 1H), 4.37 (d, 1H, J=3.0 Hz), 7.18-7.26 (m, 4H), 7.48 (d, 1H, J=6.0 Hz), 7.58-7.78 (br m, 1H), 8.55-8.58 (m, 1H); 13C NMR (CDCl3) delta 19.66, 29.12, 30.24, 46.62, 57.28, 122.21, 122.83, 133.55, 138.07, 146.98, 156.17, 157.73. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With pyridine; thionyl chloride; sodium hydrogencarbonate; triethylamine; In dichloromethane; | a Methyl (+-)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-4-methyl-3-oxo-2,3,4,5 -tetrahydro-1H-1,4-benzodiazepine-2-acetate A mixture of methyl (+-)-7-carboxy-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (0.57 g, 1.82 mmol) and thionyl chloride (15 mL) was refluxed for 1 h. The resulting orange solution was concentrated to dryness to leave a yellow-orange foam. This was dissolved in CH2Cl2 (10 mL) and added dropwise to a solution containing <strong>[5993-91-9]2-(aminomethyl)benzimidazole dihydrochloride</strong> (1.2 g, 5.46 mmol), pyridine (0.72 g, 9.1 mmol), and triethylamine (0.55 g, 5.46 mmol) in CH2Cl2 (15 mL) at 0 C. under argon. The reaction mixture was then stirred in RT under argon. After 25.5 h, CH2Cl2 (200 mL) and 5% NaHCO3 (50 mL) were added to the reaction mixture to give a light yellow precipitate which was filtered and air-dried to give the title compound (0.11 g, 14%). The filtrate was separated and the organic layer was washed sequentially with 5% NaHCO3 (50 mL) and H2O (50 mL), then was concentrated on the rotavap. After trituration with CH2Cl2 and air-drying, a yellowish solid was collected to yield more of the title compound (0.35 g, 45%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With 1,2-dichloro-ethane; N-ethyl-N,N-diisopropylamine; In dichloromethane; N,N-dimethyl-formamide; | a Methyl (2S)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC (1.15 g, 6.02 mmol) was added to a solution of methyl (2S)-7-carboxy-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (2.11 g, 5.02 mmol), 2-aminomethylbenzimidazole dihydrochloride (1.15 g, 6.02 mmol), HOBT.H2O (811 mg, 6.02 mmol), and diisopropylethylamine (1.76 mL, 10 mmol) in anhydrous DMF (25 mL) at RT. After 21 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was taken up in CH2Cl2 (240 mL) and washed with H2O. The organic layer was dried (Na2SO4), dissolved in xylenes, and reconcentrated to remove residual DMF. The crude product was chromatographed on silica gel (MeOH/CHCl3) to give the title compound (1.1 g, 52%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With 1,2-dichloro-ethane; N-ethyl-N,N-diisopropylamine; In methanol; chloroform; ethyl acetate; N,N-dimethyl-formamide; | a Methyl (+-)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-3-oxo-4-(2-phenylethyl)-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC (230 mg, 1.2 mmol) was added to a stirred solution of methyl (+-)-7-carboxy-3-oxo-4-(2-phenylethyl)-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (382.4 mg. 1.0 mmol), <strong>[5993-91-9]2-(aminomethyl)benzimidazole dihydrochloride</strong> (264 mg, 1.2 mmol), HOBT.H2O (162 mg, 1.2 mmol), and diisopropylethylamine (0.70 mL, 4.0 mmol) in anhydrous DMF (5 mL) at RT. After 19 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was partitioned between H2O (5 mL) and EtOAc (20 mL). The layers were separated and the organic layer was washed with H2O (5 mL). Drying (MgSO4), concentration, and silica gel chromatography (load with 5% MeOH/CHCl3; gradient: 5% MeOH in 1:1 EtOAc/CHCl3 (300 mL), then 10% MeOH/EtOAc (400 mL), then 10% MeOH/CHCl3) gave the title compound (414.9 mg, 81%) as an off-white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With 1,2-dichloro-ethane; N-ethyl-N,N-diisopropylamine; In methanol; ethyl acetate; N,N-dimethyl-formamide; | a Methyl (+-)-4-isopropyl-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC (173 mg, 0.90 mmol) was added to a stirred solution of methyl (+-)-7-carboxy-4-isopropyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (240.3 mg, 0.75 mmol), <strong>[5993-91-9]2-(aminomethyl)benzimidazole dihydrochloride</strong> (198 mg, 0.90 mmol), HOBT.H2O (122 mg, 0.90 mmol), and diisopropylethylamine (0.52 mL, 3.0 mmol) in anhydrous DMF (4 mL) at RT. After 20 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was diluted with H2O (5 mL) to afford a gummy precipitate. EtOAc (3 mL) was added and the mixture was stirred briskly. The precipitate remained gummy, but changed in form so that it was suspended as a mass in the solvents. The solvents were drawn off with a pipet and the residue was suspended in MeOH (3 mL) and EtOAc (6 mL). The mixture was stirred briskly at RT for several min, then was cooled in ice and filtered. The filter pad was washed with EtOAc and dried in high vacuum to leave the title compound (275.1 mg, 82%) as an off-white powder. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
49% | With sodium acetate; sodium cyanoborohydride;silica gel; In methanol; | a Methyl (+-)-7-[[[(2-benzimidazolyl)methyl]amino]methyl]-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate Methyl (+-)-7-formyl-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (180 mg, 0.65 mmol) was suspended in anhydrous methanol, then sodium acetate (160 mg, 1.95 mmol), 2-(amino methyl)benzimidazole dihydrochloride (143 mg, 0.65 mmol) and 4 A molecular sieves were added. After 30 min., sodium cyanoborohydride (45 mg, 0.71 mmol) was added in 2 portions over a period of 30 min. The reaction mixture was allowed to stir at RT overnight, then the methanol was removed under vacuum. The residue was diluted with CH2Cl2, and the solution was washed with saturated NaHCO3. Drying (MgSO4), concentration, and silica gel chromatography (90% CH2Cl2/9% methanol/1% NEt3) gave the title compound (133 mg, 49%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium acetate; sodium tris(acetoxy)borohydride; In methanol; ethyl acetate; | Step 2 1-(1H-Benzimidazol-2-ylmethyl)-6-benzyl-octahydro-quinolin-2-one A mixture of 0.74 g of 3-(5-benzyl-2-oxo-cyclohexyl)-propionic acid ethyl ester, 0.572 g of 2-aminomethylbenzimidazole dihydrochloride, 10 mL of 1,2-dichloroethane, 0.40 g of sodium acetate and 0.74 g of sodium triacetoxyborohydride was stirred at room temperature for 48 h. The reaction mixture was diluted with 100 mL chloroform and 40 mL saturated aqueous Na2CO3 and the layers separated. The aqueous layer was extracted with 2*25 mL of chloroform and the combined organic layers dried over magnesium sulfate and concentrated under reduced pressure. Purification by chromatography eluding with a gradient of ethyl acetate to 10% methanol in ethyl acetate gave 0.15 g of 1-(1H-benzimidazol-2-ylmethyl)-6-benzyl-octahydro-quinolin-2-one. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium hydroxide; In methanol; at 20℃; for 0.5h; | Preparation 1 2-(Aminomethyl)benzimidazole; Add 2-(aminomethyl)bcnzimidazole, dihydrochloride, hydrate (18.50 g) to a solution of potassium hydroxide (9.50 g) in methanol (400 mL). Stir the resulting mixture at room temperature for 30 minutes, filter, and concentrate the filtrate in vacuo. Extract the residue with EtOAc (5 x 500 mL) and filter. Concentrate the filtrate in vacuo to give the title compound as a white solid (9.60 g). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With 1,2-dichloro-ethane; N-ethyl-N,N-diisopropylamine; In dichloromethane; N,N-dimethyl-formamide; | a Methyl (2S)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC (1.15 g, 6.02 mmol) was added to a solution of methyl (2S)-7-carboxy-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (2.11 g, 5.02 mmol), 2-aminomethylbenzimidazole dihydrochloride (1.15 g, 6.02 mmol), HOBT.H2 O (811 mg, 6.02 mmol), and diisopropylethylamine (1.76 mL, 10 mmol) in anhydrous DMF (25 mL) at RT. After 21 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was taken up in CH2 Cl2 (240 mL) and washed with H2 O. The organic layer was dried (Na2 SO4), dissolved in xylenes, and reconcentrated to remove residual DMF. The crude product was chromatographed on silica gel (MeOH/CHCl3) to give the title compound (1.1 g, 52%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With N-ethyl-N,N-diisopropylamine; In methanol; chloroform; ethyl acetate; N,N-dimethyl-formamide; | a Methyl (+-)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-3-oxo-4-(2-phenylethyl)-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC. (230 mg, 1.2 mmol) was added to a stirred solution of methyl (+-)-7-carboxy-3-oxo-4-(2-phenylethyl)-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (382.4 mg, 1.0 mmol), <strong>[5993-91-9]2-(aminomethyl)benzimidazole dihydrochloride</strong> (264 mg, 1.2 mmol), HOBT.H2 O (162 mg, 1.2 mmol), and diisopropylethylamine (0.70 mL, 4.0 mmol) in anhydrous DMF (5 mL) at RT. After 19 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was partitioned between H2 O (5 mL) and EtOAc (20 mL). The layers were separated and the organic layer was washed with H2 O (5 mL). Drying (MgSO4), concentration, and silica gel chromatography (load with 5% MeOH/CHCl3; gradient: 5% MeOH in 1:1 EtOAc/CHCl3 (300 mL), then 10% MeOH/EtOAc (400 mL), then 10% MeOH/CHCl3) gave the title compound (414.9 mg, 81%) as an off-white solid: TLC (10% MeOH/EtOAc) Rf 0.62; 1 H NMR (250 MHz, DMSO-d6) delta 8.72 (br t, J=5.6 Hz, 1H), 7.35-7.75 (m, 4H), 7.00-7.35 (m, 7H), 6.56 (d, J=8.4 Hz, 1H), 6.37 (br d, J=3.5 Hz, 1H), 5.42 (d, J=16.6 Hz, 1H), 5.08-5.20 (m, 1H), 4.52-4.75 (m, 2H), 3.93 (d, J=16.6 Hz, 1H), 3.45-3.72 (m, 2H), 3.61 (s, 3H), 2.83 (dd, J=16.7, 8.9 Hz 1H), 2.60-2.75 (m, 3H); MS (ES) 512.2 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With 1,2-dichloro-ethane; N-ethyl-N,N-diisopropylamine; In methanol; ethyl acetate; N,N-dimethyl-formamide; | a Methyl (+-)-4-isopropyl-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate EDC (173 mg, 0.90 mmol) was added to a stirred solution of methyl (+-)-7-carboxy-4-isopropyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate (240.3 mg, 0.75 mmol), <strong>[5993-91-9]2-(aminomethyl)benzimidazole dihydrochloride</strong> (198 mg, 0.90 mmol), HOBT.H2 O (122 mg, 0.90 mmol), and diisopropylethylamine (0.52 mL, 3.0 mmol) in anhydrous DMF (4 mL) at RT. After 20 h, the reaction was concentrated on the rotavap (high vacuum), and the residue was diluted with H2 O (5 mL) to afford a gummy precipitate. EtOAc (3 mL) was added and the mixture was stirred briskly. The precipitate remained gummy, but changed in form so that it was suspended as a mass in the solvents. The solvents were drawn off with a pipet and the residue was suspended in MeOH (3 mL) and EtOAc (6 mL). The mixture was stirred briskly at RT for several min, then was cooled in ice and filtered. The filter pad was washed with EtOAc and dried in high vacuum to leave the title compound (275.1 mg, 82%) as an off-white powder: 1 H NMR (250 MHz, 20% CD3 OD/CDCl 3) delta 7.45-7.70 (m, 4H), 7.15-7.35 (m, 2H), 6.56 (d, J=9.1 Hz, 1H), 5.22 (d, J=16.9 Hz, 1H), 5.13 (app t, 1H), 4.72-4.92 (m, 1H), 4.72 (s, 2H), 4.03 (d, J=16.9 Hz, 1H), 3.74 (s, 3H), 3.00 (d, J=16.4, 7.7 Hz, 1H), 2.67 (dd, J=16.4, 6.0 Hz, 1H), 1.21 (d, J=6.7 Hz, 3H), 1.03 (d, J=6.8 Hz, 3H); MS (ES) 450.2 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | b Methyl (+-)-7-[[[(2-benzimidazolyl)methyl]amino]carbonyl]-9-chloro-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate Following the procedure of Example 8(a), substituting methyl (+-)-7-carboxy-9-chloro-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate for methyl (2S)-7-carboxy-4-methyl-3-oxo-2,3,4,5-tetrahydro-1H-1,4-benzodiazepine-2-acetate, and substituting 2-aminomethylbenzimidazole dihydrochloride for 4-(1-piperidinyl)piperidine, the title compound (0.68 g, 81%) was prepared. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
11.52 g (75%) | With sodium hydroxide; In dichloromethane; water; ethyl acetate; | 1.2.2. (RS)-2,4-Dibromo-N-(1H-benzimidazol-2-ylmethyl)-butyramide STR20 To a solution of 10.8 g (45.4 mmol) 2-(aminomethyl)-benzimidazol-dihydrochloride in 5 ml water was added 25 ml dichloromethane and the mixture was vigorously stirred. At 0 C., a solution of 10.9 g (41.2 mmol) 2,4-dibromobutanoic acid chlorides) in 10 ml dichloromethane was added, followed by a solution of 5.45 g sodium hydroxide in 10 ml water. After 1.5 h, the mixture was poured on water. Ethyl acetate was added and the phases were separated. The aqueous phase was extracted with ethyl acetate and the combined organic phases were washed with water and brine and were dried over magnesium sulfate. Upon concentration the product started to crystallize from the solution. It was collected by filtration, washed with ethyl acetate and dried. 1) H. Ikuta et al., J. Med. Chem., 30, 1995 (1987) yield: 11.52 g (75%) colorless crystals IR(KBr): 1660, 1625, 1533 cm-1, MS(EI): 375 (M+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With N-ethyl-N,N-diisopropylamine; In isopropyl alcohol; for 12h;Heating / reflux; | Example 2.17: tert-butyl 4-((lH-benzo[d]imidazol-2-yl)methylamino)-3-hydroxy-l- phenylbutan-2-ylcarbamate; [0248] A solution of tert-butyl 1 -(oxiran-2-yl)-2-phenylethylcarbamate (185 mg, 0.7 mmoles), (lH-benzo[d]imidazol-2-yl)methanamine dih.ydrochlori.de salt (232 mg, 1.01 mmoles) and Hunig's base (0.49 mL, 2.8 mmoles) in iPrOH (6mL) was refluxed for 12h. The reaction was cooled to room temperature, solvent evaporated under reduced pressure and chromatographed (5% MeOH/ 95% CHCl3) to obtain 175 mg (61%) of the desired product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 16h; | 2-[Methyl(5,6,7,8-tetrahydro-8-quinolinyl)amino]methyl}-1H-benzimidazole-4-carboxylic acid pentafluorophenyl ester bound resin (400 mg, 0.30 mmol) was dilutedwith N,N-dimethylformamide (5 mL) and 2~(aminomethyl)benzimidazoledihydrochloride (132 mg, 0.60 mmol) and N,N-diisopropylethylamine (155 mg, 1.20mmol) were added. The reaction was stirred for 16 h at room temperature, filtered,concentrated and purified using reverse phase HPLC (0% to 70%acetonitrile/water/0.1% trifluoroacetic acid gradient) and lyophilized from water toprovide the product (6.7 mg, 3%, yellow solid) as the trifluoroacetate salt: 1H-NMR(DMSO-cfe) 8 9.95-9.92 (m,1H), 8.44-8.43 (m, 1H), 7.95 (d, 1H, J = 8.4 Hz), 7.88 (d,1H, J = 8.4 Hz), 7.67-7.63 (m, 3H), 7.41-7.37 (m, 2H), 7.35-7.31 (m, 1H), 4.99-4.94(m, 2H), 4.78-4.73 (m, 1H), 4.67 (d, 1H, J = 15.6 Hz), 4.53 (d, 1H, J = 15.6 Hz), 2.72(s, 3H), 2.68-2.62 (m, 2H), 2.42 (m, 1H), 2.04-1.94 (m, 2H), 1.78-1.64 (m, 1H). MSm/z 466.27 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In acetone; | EXAMPLE 3 2,3,4,5-Tetrahydro-4-hydroxy-1H-(1,4)-diazepino-[1,2-a]benzimidazole dihydrochloride 22 g. (0.1 moles) of 2-aminomethyl-benzimidazole dihydrochloride are suspended in 250 ml. of alcohol, and an alcohol solution of 12 g. (0.3 moles) of sodium hydroxide is added slowly to the cooled suspnesion. Thereafter 9.2 g. (0.1 moles) of epichlorohydrine are added to the mixture, and the reaction mixture is boiled for 3 hours under reflux. The mixture is cooled, the sodium chloride is removed by filtration, and the filtrate is evaporated to dryness under reduced pressure. The oily residue is dissolved in a mixture of acetone and alcohol, and the pH of the solution is adjusted to 3 with hydrochloric acid. The separated white, crystalline substance is filtered off, washed with a small amount of the above solvent, and dried. This way 20.9 g. (76%) of 2,3,4,5-tetrahydro-4-hydroxy-1H-(1,4)-diazepino[1,2-a]benzimidazole dihydrochloride are obtained; m.p.: 248-250C (heating rate: 4C/min.). After recrystallization from a mixture of alcohol and ether, the product melts at 251-253C (heating rate: 4C/min.). Analysis: Calculated for C11 H13 N3 O.2HCl (276.16): C: 47.84%, H: 5.47%, N: 15.22%, Cl: 25.68%. Found: C: 47.26%, H: 5.26%, N: 14.91%, Cl: 24.99%. NMR-spectrum (in D2 O): 6.13 (2H, d), 4.90 to 5.40 (3H, m, complex), 4.88 (2H, s), 2.17 (4H, m, aromatic protons). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a suspension of the amine salt (1-15) (62mg, 0.212 mmol) and triethylamine (30 muL, 0.212 mmol) in THF (2 mL) at O0C, triphosgene (21mg, 0.071 mmol) was added followed by more triethylamine (30 muL, 0.212 mmol). The reaction stirred for 10 minutes and l-(lH-benzimidazol-2- yl)methanamine dihydrochloride (47mg, 0.212 mmol) was added followed by triethylamine (45 uL, 0.218 mmol). The reaction stirred for 45min at O0C and warmed to room temperature. The reaction was diluted with EtOAc, washed with water, saturated sodium bicarbonate and brine. The combined organics were dried over Na2SO4 and concentrated in vacuo. The crude product was purified by reverse phase preparative chromatography (C-18, 0.5% TFA 95-5% water in acetonitrile) to give the title compound (L1 Jl) as a solid. Data for JL48: 1HNMR (500 MHz, d6-DMSO) delta 8.96 (s, IH), 7.73-7.71 (m, 2H), 7.47-7.46 (m, 2H), 7.34 (d J=13.7Hz, 2H), 7.28-7.26 (m, 2H), 6.91 (s, 2H), 6.18 (d J=4.2 Hz, 2H), 4.70-4.56 (m, 2H), 4.28 (dd J=8.5 Hz and 2.4 Hz, IH), 3.40-3.34 (m, 3H), 2.04-2.01 (m, IH), 1.89-1.88 (m, 2H), 1.84- 1.82 (m, IH); EI HRMS exact mass calculated for C24H24N6O2463.1257 found 463.1249. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
14% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 4h; | N-(1H-benzimidazol-2-ylmethyl)-13-cyclohexyl-6-[[4-(4-morpholinyl)-1-piperidinyl]carbonyl]-7H-indolo[2,1-a][2]benzazepine-10-carboxamide; To a stirred solution of 13-cyclohexyl-6-[[4-(4-morpholinyl)-1-piperidinyl]carbonyl]-7H-indolo[2,1-a][2]benzazepine-10-carboxylic acid (134 mg, 0.24 mmol) in DMF (500 muL) were added 2-aminomethyl benzimidazole dihydrochloride hydrate (75 mg, 0.32 mmol), N,N-diisopropylethylamine (165 muL, 0.95 mmol), N-(3-dimethylaminopropyl)-N'-ethylcarbodiimide hydrochloride (60 mg, 0.31 mmol), and 1-hydroxybenzotriazole (44 mg, 0.33 mmol). The suspension was allowed to stir at r.t. for 4 hr, at which point the solvent was removed under reduced pressure. CH2Cl2 (5 mL) was added, and the suspension filtered through Celite, and chromatographed on silica gel (gradient elution: 0%?10% MeOH in CH2Cl2) to afford the title compound as a pale yellow solid (24 mg, 14% yield). LC/MS (ESI) retention time: 1.57 min, m/z 683 (MH+); 1H NMR (400 MHz, CDCl3) delta 1.07-1.53 (m, 4 H) 1.63-1.78 (m, 3 H) 1.99 (s, 4 H) 2.25 (t, J=11.08 Hz, 1 H) 2.39 (s, 4 H) 2.59-2.87 (m, 3 H) 3.63 (s, 4 H) 4.14 (s, 1 H) 4.73-5.00 (m, 3 H) 6.78 (s, 1 H) 7.17 (ddd, J=9.63, 3.90, 3.59 Hz, 2 H) 7.34 (dd, J=7.05, 1.76 Hz, 1 H) 7.40-7.47 (m, 2 H) 7.50-7.58 (m, 4 H) 7.73 (d, J=8.31 Hz, 1 H) 8.16 (s, 1 H) 8.68 (s, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | A solution of glycine benzimidazole dihydrochloride (5.0 g, 22.7 mmol) and 2,5-thiophenedicarboxylic acid (1.95 g, 11.4 mmol) in 20 ml pyridine was stirred for 5 min till a white precipitate was obtained. Then, triphenyl phosphite (TPP) (6.38 ml, 22.7 mmol) was added to the reaction mixture at a temperature of 50 C and the temperature was slowly raised to 80-85 C. Within half an hour, the precipitate redissolved and the clear solution was stirred for 30 h. The resulting orange brown solution was allowed to cool and washed with saturated NaHCO3 solution in a separating funnel, till no effervescence could be seen. Then, it was washed with water 2-3 times. Upon further washing with acetone, a white solid precipitated. This was dried and washed with boiling methanol. This recrystallized white product was filtered, washed with cold water, dried in air and was analyzed for the composition C22H18N6O2S·2H2O. Yield: 72%, M.P.:284-285 C. |
Tags: 5993-91-9 synthesis path| 5993-91-9 SDS| 5993-91-9 COA| 5993-91-9 purity| 5993-91-9 application| 5993-91-9 NMR| 5993-91-9 COA| 5993-91-9 structure
[ 1571-93-3 ]
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