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[ CAS No. 609-06-3 ] {[proInfo.proName]}

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Chemical Structure| 609-06-3
Chemical Structure| 609-06-3
Structure of 609-06-3 * Storage: {[proInfo.prStorage]}
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Product Details of [ 609-06-3 ]

CAS No. :609-06-3 MDL No. :MFCD00151096
Formula : C5H10O5 Boiling Point : -
Linear Structure Formula :- InChI Key :PYMYPHUHKUWMLA-WISUUJSJSA-N
M.W : 150.13 Pubchem ID :95259
Synonyms :
L-Xylose

Calculated chemistry of [ 609-06-3 ]

Physicochemical Properties

Num. heavy atoms : 10
Num. arom. heavy atoms : 0
Fraction Csp3 : 0.8
Num. rotatable bonds : 4
Num. H-bond acceptors : 5.0
Num. H-bond donors : 4.0
Molar Refractivity : 31.0
TPSA : 97.99 Ų

Pharmacokinetics

GI absorption : Low
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -8.86 cm/s

Lipophilicity

Log Po/w (iLOGP) : -1.25
Log Po/w (XLOGP3) : -2.32
Log Po/w (WLOGP) : -2.74
Log Po/w (MLOGP) : -2.48
Log Po/w (SILICOS-IT) : -1.29
Consensus Log Po/w : -2.01

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : 0.95
Solubility : 1350.0 mg/ml ; 9.01 mol/l
Class : Highly soluble
Log S (Ali) : 0.8
Solubility : 944.0 mg/ml ; 6.29 mol/l
Class : Highly soluble
Log S (SILICOS-IT) : 1.94
Solubility : 13000.0 mg/ml ; 86.9 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 2.81

Safety of [ 609-06-3 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P305+P351+P338 UN#:N/A
Hazard Statements:H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 609-06-3 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 609-06-3 ]
  • Downstream synthetic route of [ 609-06-3 ]

[ 609-06-3 ] Synthesis Path-Upstream   1~26

  • 1
  • [ 609-06-3 ]
  • [ 67-64-1 ]
  • [ 114861-22-2 ]
YieldReaction ConditionsOperation in experiment
86%
Stage #1: at 20 - 24℃; for 17.25 h; Industry scale
Stage #2: With hydrogenchloride In water at 20℃; for 6 h;
6. EXAMPLES Aspects of this invention can be understood from the following examples.6.1. Synthesis of ((3aS,5R,6S,6aS)-6-hydroxy-2,2-dimethyltetrahydrofuro [2.3-d][13]dioxol-5-yl)(morpholino)methanone To a 12L three-necked round bottom flask with mechanical stirrer, rubber septum with temperature probe and gas bubbler was charged L-(-)-xylose (504.40 g, 3.360 mol), acetone (5L, reagent grade) and anhydrous MgSO4 powder (811.23g, 6.740 mol / 2.0 equiv). The suspension was set stirring at ambient and then concentrated H2SO4 (50 mL, 0.938 mol / 0.28 equiv) was added. A slow mild exotherm was noticed (temperature rose to 24°C over about 1 hr) and the reaction was allowed to stir at ambient overnight. After 16.25 hours, TLC suggested all L-xylose had been consumed, with the major product being the bis-acetonide along with some (3aS,5S,6R,6aS)-5-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxol-6-ol. The reaction mixture was filtered and the collected solids were washed twice with acetone (500 mL per wash). The stirring yellow filtrate was neutralized with concentrated NH4OH solution (39 mL) to pH = 8.7. After stirring for 10 min, the suspended solids were removed by filtration. The filtrate was concentrated to afford crude bis-acetonide intermediate as a yellow oil (725.23 g). The yellow oil was suspended in 2.5 L water stirring in a 5L three-necked round bottom flask with mechanical stirrer, rubber septum with temperature probe and gas bubbler. The pH was adjusted from 9 to 2 with 1N aq. HCl (142mL) and stirred at room temperature for 6 h until GC showed sufficient conversion of the bis-acetonide intermediate to (3aS,5S,6R,6aS)-5-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxol-6-ol. The reaction was neutralized by the addition of 50percent w/w aq. K2HPO4 until pH=7. The solvent was then evaporated and ethyl acetate (1.25L) was added to give a white suspension which was filtered. The filtrate was concentrated in vacuo to afford an orange oil which was dissolved in 1 L methyl tert-butyl ether. This solution had KF 0.23 wtpercent water and was concentrated to afford (3aS,5S,6R,6aS)-5-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxol-6-ol as an orange oil (551.23g, 86percent yield, 96.7 areapercent pure by GC). 1H NMR (400 MHz, DMSO-d6)δ1.22 (s, 3 H) 1.37 (s, 3 H) 3.51 (dd, J=11.12, 5.81 Hz, 1 H) 3.61 (dd, J=11.12, 5.05 Hz, 1 H) 3.93 - 4.00 (m, 1 H) 3.96 (s, 1 H) 4.36 (d, J=3.79 Hz, 1 H) 4.86 (br. s., 2 H) 5.79 (d, J=3.54 Hz, 1 H). 13C NMR (101MHz, DMSO-d6) δ26.48, 27.02, 59.30, 73.88, 81.71, 85.48, 104.69, 110.73. To a solution of (3aS,5S,6R,6aS)-5-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxol-6-ol (25.0g, 131 mmol) in acetone (375 mL, 15X) and H2O (125 mL, 5X) was added NaHC03 (33.0g, 3.0 equiv), NaBr (2.8g, 20 molpercent) and TEMPO (0.40g, 2 molpercent) at 20°C. The mixture was cooled to 0-5°C and solid trichloroisocyanuric acid (TCCA, 30.5 g, 1.0 equiv) was then added in portions. The suspension was stirred at 20°C for 24h. Methanol (20 mL) was added and the mixture was stirred at 20°C for 1h. A white suspension was formed at this point. The mixture was filtered, washed with acetone (50 mL, 2X). The organic solvent was removed under vacuum and the aqueous layer was extracted with EtOAc (300 mL, 12X x3) and the combined organic layers were concentrated to afford an oily mixture with some solid residue. Acetone (125 mL, 5X) was added and the mixture was filtered. The acetone solution was then concentrated to afford the desired acid ((3aS,5R,6S,6aS)-6-hydroxy-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxole-5-carboxylic acid) as a yellow solid (21.0g, 79percent). 1H NMR (methanol-d4), δ 6.00 (d, J= 3.2 Hz, 1H), 4.72 d, J= 3.2 Hz, 1H), 4.53 (d, J= 3.2 Hz, 1H), 4.38 (d, J= 3.2 Hz, 1H), 1.44 (s, 3H), 1.32 (s, 3H). To a solution of (3aS,5R,6S,6aS)-6-hydroxy-2,2-dimethyltetrahydrofuro[2,3-d][1,3]dioxole-5-carboxylic acid (5.0g, 24.5 mmol) in THF (100 mL, 20X) was added TBTU (11.8g, 1.5 equiv), N-methylmorpholine (NMM, 4.1 mL, 1.5 equiv) and the mixture was stirred at 20°C for 30 min. Morpholine (3.2 mL, 1.5 equiv) was then added, and the reaction mixture was stirred at 20°C for an additional 6h. The solid was filtered off by filtration and the cake was washed with THF (10 mL, 2X x2). The organic solution was concentrated under vacuum and the residue was purified by silica gel column chromatography (hexanes:EtOAc, from 1:4 to 4:1) to afford 4.3 g of the desired morpholine amide (64percent) as a white solid. 1H NMR (CDCl3), 8 6.02 (d, J= 3.2 Hz, 1H), 5.11 (br s, 1H), 4.62 (d, J= 3.2 Hz, 1H), 4.58 (d, J= 3.2 Hz, 1H), 3.9-3.5 (m, 8H), 1.51 (s, 3H), 1.35 (s, 3H).
Reference: [1] Patent: EP2332947, 2011, A1, . Location in patent: Page/Page column 6-7
[2] Nucleosides and Nucleotides, 1995, vol. 14, # 3-5, p. 611 - 617
[3] Organic Letters, 2002, vol. 4, # 22, p. 3951 - 3953
[4] Bioorganic and Medicinal Chemistry, 2008, vol. 16, # 22, p. 9830 - 9836
  • 2
  • [ 609-06-3 ]
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  • [ 114861-22-2 ]
  • [ 131156-47-3 ]
Reference: [1] Patent: US2009/30198, 2009, A1, . Location in patent: Page/Page column 7
[2] Patent: US2010/16422, 2010, A1, . Location in patent: Page/Page column 4
  • 3
  • [ 609-06-3 ]
  • [ 114861-22-2 ]
Reference: [1] Collection of Czechoslovak Chemical Communications, 2006, vol. 71, # 7, p. 1063 - 1087
[2] Nucleosides, Nucleotides and Nucleic Acids, 2001, vol. 20, # 4-7, p. 703 - 706
[3] Helvetica Chimica Acta, 1938, vol. 21, p. 263,267
[4] Patent: WO2012/140596, 2012, A1,
[5] Patent: CN106892948, 2017, A,
  • 4
  • [ 609-06-3 ]
  • [ 67-64-1 ]
  • [ 131156-47-3 ]
YieldReaction ConditionsOperation in experiment
84.3% at 20 - 30℃; for 12 h; in room temperature,A solution of magnesium sulfate (160 g, 1.33 mol) and concentrated sulfuric acid (9.9 mL, 190 mmol)(2S, 3R, 4S) -2,3,4,5-tetrahydroxyvaler 1a (99.0 g, 659 mmol)In acetone (1.2 L)The resulting reaction was stirred for 12 hours.The reaction mixture was suction filtered,Washed with acetone (300 mL x 2)Combined filtrate,With 25percent ammonia to adjust the pH to 7,Solid precipitated, filtered again and washed with acetone (150 mL x 2). The filtrate was combined, concentrated under reduced pressure,The title compound Ib was obtained as a yellow oil (128.0 g, 84.3percent).
Reference: [1] Patent: CN106892948, 2017, A, . Location in patent: Paragraph 0183; 0185; 0186; 0187
[2] Nucleosides, Nucleotides and Nucleic Acids, 2001, vol. 20, # 4-7, p. 703 - 706
[3] Collection of Czechoslovak Chemical Communications, 2006, vol. 71, # 7, p. 1063 - 1087
[4] Patent: WO2012/140596, 2012, A1, . Location in patent: Page/Page column 53-55
  • 5
  • [ 609-06-3 ]
  • [ 67-64-1 ]
  • [ 114861-22-2 ]
  • [ 131156-47-3 ]
Reference: [1] Patent: US2009/30198, 2009, A1, . Location in patent: Page/Page column 7
[2] Patent: US2010/16422, 2010, A1, . Location in patent: Page/Page column 4
  • 6
  • [ 609-06-3 ]
  • [ 131156-47-3 ]
Reference: [1] Helvetica Chimica Acta, 1938, vol. 21, p. 263,267
  • 7
  • [ 74-90-8 ]
  • [ 609-06-3 ]
  • [ 6322-07-2 ]
Reference: [1] Journal of Biological Chemistry, 1918, vol. 36, p. 348
[2] Justus Liebigs Annalen der Chemie, 1914, vol. 403, p. 249[3] Justus Liebigs Annalen der Chemie, 1910, vol. 376, p. 55 Anm.
  • 8
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  • [ 3080-30-6 ]
Reference: [1] Bioorganic and Medicinal Chemistry, 2011, vol. 19, # 23, p. 7100 - 7110
  • 9
  • [ 1195193-89-5 ]
  • [ 609-06-3 ]
YieldReaction ConditionsOperation in experiment
92% at 20 - 30℃; Compound 9 (10.0 g, 31.42 mmol) was dissolved in 30percent sodium ethoxide solution (22.7 g, 126.3 mmol), and the mixture was stirred at 20-30 degrees for 2-5 hours, after concentrating the reaction solution, 30 ml of dichloromethane was added, ρΗ=7 was adjusted with 3N hydrochloric acid, the organic phase was separated and the aqueous phase was extracted three times with dichloromethane, dried the organic phase with anhydrous sodium sulfate, after separation of the solid, the organic phase was concentrated to give white crystals L-xylose (4.4 g, yield 92percent);
Reference: [1] Patent: CN108752396, 2018, A, . Location in patent: Paragraph 0068-0070
  • 10
  • [ 124244-64-0 ]
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Reference: [1] Journal of the American Chemical Society, 1989, vol. 111, # 26, p. 9275 - 9276
  • 11
  • [ 1128-23-0 ]
  • [ 609-06-3 ]
Reference: [1] Patent: US2003/97029, 2003, A1,
  • 12
  • [ 124244-63-9 ]
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Reference: [1] Journal of the American Chemical Society, 1989, vol. 111, # 26, p. 9275 - 9276
  • 13
  • [ 405218-68-0 ]
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Reference: [1] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
  • 14
  • [ 5328-37-0 ]
  • [ 609-06-3 ]
  • [ 1949-78-6 ]
  • [ 24259-59-4 ]
Reference: [1] Australian Journal of Chemistry, 2005, vol. 58, # 1, p. 58 - 59
  • 15
  • [ 143106-69-8 ]
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Reference: [1] Journal of Organic Chemistry, 1992, vol. 57, # 22, p. 5899 - 5907
  • 16
  • [ 100227-29-0 ]
  • [ 609-06-3 ]
Reference: [1] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
[2] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
  • 17
  • [ 196494-81-2 ]
  • [ 609-06-3 ]
Reference: [1] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
[2] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
  • 18
  • [ 280561-89-9 ]
  • [ 609-06-3 ]
Reference: [1] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
[2] Tetrahedron, 2002, vol. 58, # 2, p. 253 - 259
  • 19
  • [ 6027-87-8 ]
  • [ 609-06-3 ]
Reference: [1] Patent: WO2005/95314, 2005, A1, . Location in patent: Page/Page column 26
  • 20
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Reference: [1] Journal of Organic Chemistry, 1992, vol. 57, # 22, p. 5899 - 5907
  • 21
  • [ 87-99-0 ]
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Reference: [1] Advanced Synthesis and Catalysis, 2009, vol. 351, # 10, p. 1523 - 1530
  • 22
  • [ 137491-74-8 ]
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Reference: [1] Liebigs Annalen der Chemie, 1992, # 1, p. 95 - 98
  • 23
  • [ 7732-18-5 ]
  • [ 50-81-7 ]
  • [ 98-01-1 ]
  • [ 609-06-3 ]
  • [ 124-38-9 ]
Reference: [1] Bulletin de la Societe Chimique de France, 1959, p. 74,75
[2] Bulletin de la Societe Chimique de France, 1959, p. 74,75
[3] Food Research, 1953, vol. 18, p. 633
  • 24
  • [ 609-06-3 ]
  • [ 1103738-17-5 ]
Reference: [1] Patent: EP2332947, 2011, A1,
[2] Patent: WO2012/140596, 2012, A1,
[3] Patent: CN106892948, 2017, A,
[4] Patent: EP2661256, 2018, B1,
  • 25
  • [ 609-06-3 ]
  • [ 1103738-19-7 ]
Reference: [1] Patent: EP2332947, 2011, A1,
[2] Patent: EP2332947, 2011, A1,
[3] Patent: CN106892948, 2017, A,
[4] Patent: EP2661256, 2018, B1,
[5] Patent: EP2661256, 2018, B1,
  • 26
  • [ 609-06-3 ]
  • [ 1103738-30-2 ]
Reference: [1] Patent: EP2332947, 2011, A1,
[2] Patent: EP2332947, 2011, A1,
[3] Patent: EP2661256, 2018, B1,
[4] Patent: EP2661256, 2018, B1,
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