Structure of Cl-amidine TFA
CAS No.: 1043444-18-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
Cl-amidine is a peptidylarginine deminase (PAD) inhibitor, with an IC50 5.9±0.3 μM for PAD4.
Synonyms: Cl-amidine
4.5
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Search for reports by entering the product batch number.
Batch number can be found on the product's label following the word 'Batch'.
Search for reports by entering the product batch number.
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CAS No. : | 1043444-18-3 |
Formula : | C16H20ClF3N4O4 |
M.W : | 424.80 |
SMILES Code : | O=C(N)[C@@H](NC(C1=CC=CC=C1)=O)CCCNC(CCl)=N.O=C(O)C(F)(F)F |
Synonyms : |
Cl-amidine
|
MDL No. : | MFCD31536783 |
InChI Key : | WUSNMVYWOLUWDD-MERQFXBCSA-N |
Pubchem ID : | 57402549 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P280-P301+P312-P302+P352-P305+P351+P338 |
In Vitro:
Cell Line
|
Concentration | Treated Time | Description | References |
CD68+VSMCs | 100 μM | 0.5 h | Inhibit PAD4 activity, reduce ETs generation | PMC9723654 |
HEK293T/PAD2 cells | 25 μM | 1 hour | To evaluate the target engagement of Cl-amidine TFA in HEK293T/PAD2 cells, results showed that it effectively entered the cells and covalently modified PAD2 at 25 μM concentration. | PMC5477668 |
NZM mouse neutrophils | 200 μM | 12 hours | Cl-amidine inhibited NET release from NZM mouse neutrophils | PMC3696545 |
BALB/c mouse neutrophils | 200 μM | 12 hours | Cl-amidine inhibited NZM serum-induced NET release from BALB/c mouse neutrophils | PMC3696545 |
keratinocytes | 0–800 μM | 2 days | Cl-amidine inhibited deimination in a dose-dependent manner and was not cytotoxic for keratinocytes. At 800 μM, Cl-amidine was shown to reduce deimination by half, alter keratinocyte differentiation, decrease the number of corneocyte layers, significantly increase the number of transitional cells, induce clustering of mitochondria and of heterogeneous vesicles in the cytoplasm of granular keratinocytes, and upregulate the expression of autophagy proteins, including LC3-II, sestrin-2 and p62/SQSTM1. | PMC6708725 |
Human brain microvascular endothelial cells (HBMVECs) | 6 μM | 24 hours | To assess the direct effect of Cl-amidine on brain endothelial cell PADs, results showed no significant effect of Cl-amidine treatment on vWF release, indicating no citrullination in brain endothelial cells. | PMC11634782 |
Human brain microvascular endothelial cells (HBMVECs) | 500 ng/mL | 24-72 hours | To assess the effect of NETs on EndMT in brain endothelial cells, results showed that NETs promote EndMT, as evidenced by changes in cell morphology and increased Snail expression. | PMC11634782 |
MCF7/TamR cells | 200 μM | 4 days | To evaluate the inhibitory effect of Cl-amidine on the proliferation of MCF7/TamR cells, results showed that 200 μM Cl-amidine significantly inhibited cell proliferation | PMC6785896 |
MCF7/TamR cells | 50 μM | 4 days | To evaluate the inhibitory effect of Cl-amidine combined with tamoxifen on the proliferation of MCF7/TamR cells, results showed that 50 μM Cl-amidine combined with 5 μM tamoxifen significantly inhibited cell proliferation | PMC6785896 |
MCF7/TamR cells | 25 μM | 4 days | To evaluate the effect of Cl-amidine combined with docetaxel on the viability of MCF7/TamR cells, results showed that 0.1 μM docetaxel combined with 25 μM Cl-amidine significantly decreased cell viability | PMC6785896 |
U2OS cells | 20 μM | 72 hours | To evaluate the antiproliferative activities of Cl-amidine TFA analogs on U2OS cells. Results showed that biphenyl tetrazole tert-butyl Cl-amidine (13) completely abolished the growth of U2OS cells at 20 μM. | PMC4610306 |
In Vivo:
Species
|
Animal Model
|
Administration | Dosage | Frequency | Description | References |
NZM mice | NZM mouse lupus model | subcutaneous injection | 10 mg/kg/d | daily for 14 weeks | Cl-amidine significantly improved vasculogenesis, endothelial function, and prothrombotic phenotype in NZM mice | PMC3696545 |
Pad4−/− mice | Citrobacter rodentium infection model | Intraperitoneal injection | 20 mg/kg | Administered 3 hours prior to infection, followed by once daily for the next 3 consecutive days and then once every alternate day until day 11 | Cl-amidine treatment modestly enhanced the susceptibility of WT mice to C. rodentium infection, as evidenced by increased CR burden in feces and worsened colonic histopathology, though to a lesser extent compared to Pad4?/? mice and DNase I-treated mice. | PMC6519124 |
Mice | Ccm3-iECKO mice | Intraperitoneal injection | 10 mg/kg/day | Once daily for 7 days | To assess the effect of Cl-amidine on NET formation and CCM lesions, results showed that Cl-amidine significantly reduced NET formation and lesion burden, improving endothelial activation, EndMT, coagulation, and neuroinflammation. | PMC11634782 |
BALB/c Nude mice | Breast cancer xenograft model | Intraperitoneal injection | 20 mg/kg/day | Every 3 days for 3 weeks | To evaluate the effect of Cl-amidine combined with docetaxel on tumor growth in a breast cancer xenograft model, results showed that the combination treatment significantly reduced tumor weight | PMC6785896 |
C57BL/6 mice | Traumatic brain injury model | Intraperitoneal injection | 10 mg/kg | Once daily for three consecutive days | Inhibition of PAD4 significantly ameliorated neurological deficits in mice and reduced neuronal pyroptosis by inhibiting the STING/IRE1α-NLRP1 pathway | PMC10152368 |
C57BL/6J mice | DSS-induced colitis model | Gavage | 25mg/kg | Once daily for 7 days | To evaluate the effect of Cl-amidine on DSS-induced colitis, the results showed that Cl-amidine alleviated the severity of colitis, reduced weight loss, decreased the disease activity index (DAI) score, and increased colon length. | PMC10151647 |
C57BL/6 mice | Traumatic brain injury (TBI) model | Intraperitoneal injection | 50 mg/kg | Once daily for three consecutive days | Cl-amidine treatment improved short-term neurological functions, reduced cerebral lesion volume, reduced brain edema, and restored cerebral blood flow (CBF) after TBI. In addition, Cl-amidine exerted neuroprotective effects by attenuating BBB disruption, inhibiting immune cell infiltration, and alleviating neuronal death after TBI. | PMC10543875 |
Bio Calculators | ||||
Preparing Stock Solutions | ![]() |
1mg | 5mg | 10mg |
1 mM 5 mM 10 mM |
2.35mL 0.47mL 0.24mL |
11.77mL 2.35mL 1.18mL |
23.54mL 4.71mL 2.35mL |
Tags: Cl-amidine | Protein Arginine Deiminase | Apoptosis | MicroRNA | Peptidylarginine Deiminase | miRNA | colitis | sepsis | miR-16 | miRNA-16 | microRNA-16 | peptidylarginine deiminase inhibitor | Cl-amidine TFA | PAD inhibitor | cell cycle arrest | PAD1 inhibitor | PAD3 inhibitor | PAD4 inhibitor | histone 3 citrullination | neutrophil extracellular trap formation | 1043444-18-3
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P378 | |
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P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
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P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
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H242 | Heating may cause a fire |
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H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
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H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
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H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
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H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
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H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
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H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
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Code | Phrase |
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H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
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