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CAS No. : | 159634-94-3 | MDL No. : | MFCD08704784 |
Formula : | C20H27N3O5 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | DSCBSBPYDCIRPP-OAHLLOKOSA-N |
M.W : | 389.45 | Pubchem ID : | 15895387 |
Synonyms : |
|
Num. heavy atoms : | 28 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.45 |
Num. rotatable bonds : | 10 |
Num. H-bond acceptors : | 5.0 |
Num. H-bond donors : | 4.0 |
Molar Refractivity : | 105.47 |
TPSA : | 120.52 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.33 cm/s |
Log Po/w (iLOGP) : | 1.87 |
Log Po/w (XLOGP3) : | 1.9 |
Log Po/w (WLOGP) : | 2.58 |
Log Po/w (MLOGP) : | 1.05 |
Log Po/w (SILICOS-IT) : | 2.39 |
Consensus Log Po/w : | 1.96 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -3.03 |
Solubility : | 0.364 mg/ml ; 0.000935 mol/l |
Class : | Soluble |
Log S (Ali) : | -4.05 |
Solubility : | 0.0344 mg/ml ; 0.0000884 mol/l |
Class : | Moderately soluble |
Log S (SILICOS-IT) : | -4.82 |
Solubility : | 0.00595 mg/ml ; 0.0000153 mol/l |
Class : | Moderately soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 3.42 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P301+P312-P302+P352-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
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With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; N-ethyl-N,N-diisopropylamine In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogen In ethanol | ||
With hydrogen |
Yield | Reaction Conditions | Operation in experiment |
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With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: EDC, DMAP / CH2Cl2 / 0 °C 2: HCl / ethyl acetate / 0 °C 3: HOBt, EDC / Ambient temperature 4: H2 / Pd/C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: HOBt, EDC / Ambient temperature 2: H2 / Pd/C | ||
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: HCl / ethyl acetate / 0 °C 2: HOBt, EDC / Ambient temperature 3: H2 / Pd/C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: HOBt, EDC / CH2Cl2 2: HCl / ethyl acetate / 0 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: HOBt, EDC / CH2Cl2 2: HCl / ethyl acetate / 0 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: HOBt, EDC / CH2Cl2 2: HCl / ethyl acetate / 0 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: HOBt, EDC / CH2Cl2 2: HCl / ethyl acetate / 0 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr | ||
Multi-step reaction with 2 steps 1: triethylamine; 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 3 h / 38 °C / Inert atmosphere; Large scale 2: sodium hydroxide / water; tert-butyl methyl ether / 20 °C / Large scale |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: EDC, HOBt, DIEA / CH2Cl2 2: H2 / Pd/C / ethanol / 760 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride In tetrahydrofuran at 20℃; for 16h; | 1.1T.R4 A mixture of ethyl 2-(2-naphthyl)-2-(4-nitroimidazolyl) acetate (2.04 grams, 6.27 mmol), tetrahydrofuran (20 mL), and 10% palladium on carbon (2.04 gram) was hydrogenated at ambient temperature and pressure until complete as determined by hplc (20 hours). The catalyst was removed by filtration and rinsed with tetrahydrofuran (10 mL). The filtrate was added to a slurry consisting of 1-[3-(dimethyl amino)propyl-3-ethylcarbodiimide hydrochloride (1.20 grams, 6.27 mmol), tetrahydrofuran (10 mL), and (2R)-2-{2-[(tert-butoxy)carbonylamino]-2-methylpropanoylamino}-3-indol-3-ylpropanoic acid (2.44 grams, 6.27 mmol) and stirred 16 hours at ambient temperature. The reaction mixture was partitioned between water (150 mL) and ethyl acetate (3×50 mL). The organic extracts were combined, washed with saturated sodium chloride solution, dried using sodium sulfate, and evaporated. The resulting crude oil was purified by column chromatography on silica gel with hexane ethyl acetate: methanol (10:10:1) as an eluent giving 1.72 grams (41%) of ethyl 2-[4-((2R)-2-{2-[(tert-butoxy) carbonylamino]-2-methylpropanoylamino}-3-indol-3-ylpropanoyl amino)imidazolyl]-2-(2-naphthyl)acetate. A 0.2 gram sample was further purified using preparative reverse phase hplc to give 0.16 grams of ethyl 2-[4-{(2R)-2-{2-[(tert-butoxy) carbonylamino]-2-methylpropanoylamino}-3-indol-3-ylpropanoyl amino)imidazolyl]-2-(2-naphthyl)acetate for analytical study. MS (FIA) m/z 667.4 [(M+H)+]. Anal. calcd. exact mass for C37H43N6O6 [((M+H)+]=667.3244. Exact mass found by mass spectrometry: C37H43N6O6 [(M+H)+]=667.3254. 1H nmr (CDCl3): 1.25-1.42 (m, 19H), 3.24-3.33 (m, 2H), 4.28-4.33 (m, 2H), 4.98-5.01 (m, 1H), 5.94 (s, 1H), 6.85-7.01 (m, 3H), 7.18-7.21 (m, 2H), 7.35-7.39 (m, 2H), 7.49-7.58 (m, 4H), 7.78-7.84 (m, 4H), 8.69 (s, 1H), 10.65 (s, broad, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide In tetrahydrofuran at 20℃; | 2-43.15 The product of Preparation EX9A (0.85 g, 2.57 mmol) was combined with 10% palladium/carbon (0.50 g) and palladium/black (0.15 g) in tetrahydrofuran (40 mL)and the mixture shaken under a hydrogen atmosphere (38 psi) in a Parr apparatus. After reduction was complete, the catalyst was removed by filtration through celite and the amine/tetrahydrofuran solution was immediately combined with 1,3-dicyclohexylcarbodiimide (0.53 g, 2.57mmol), 1-hydroxybenzotriazole (0.35 g, 2.57 mmol), the product of Preparation 1L (1.00 g, 2.57 mmol) and additional tetrahydrofuran (60 mL) After stirring overnight at ambient temperature, the mixture was concentrated and the residue slurried in ethyl acetate and filtered. The filtrate was concentrated and the residue purified by flash chromatography(silica gel, chloroform/methanol) which gave 1.62 g of the desired product which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; dicyclohexyl-carbodiimide In tetrahydrofuran at 20℃; for 16h; | 2-46.345 To a mixture of the product of Preparation 11 (6.0 g, 17.1 mmol) and 10% palladium on carbon (6.0 g) in tetrahydrofuran (100 mL). The reaction mixture was placed under a hydrogen atmosphere (40 psi) using a Parr apparatus for 30 min then filtered through Celite. The resulting solution was then added to a previously prepared mixture of the product of Preparation 1L (6.66 g, 17.1 mmol), 1-hydroxybenzotriazole (2.31 g, 17.1 mmol), and 1,3 dicyclohexylcarbodiimide (3.53 g, 17.1 mmol) in tetrahydrofuran (75 mL). After 16 h at room temperature, the reaction mixture was concentrated and the crude material purified by flash chromatography (silica gel, 4% methanol/dichloromethane) to yield 6.17 g (52%) of the desired product as a brown foam: 1H NMR consistent with structure; MS (ion spray) 693 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; dicyclohexyl-carbodiimide In tetrahydrofuran at 20℃; | 2-44.19 The compound of preparation 17 (0.73 g, 2.38 mmol) was combined with 10% palladium/carbon (0.50 g) and palladium/black (0.10 g) in tetradyrofuran(40 mL)and the mixture shaken under hydrogen (38 psi) in a Parr apparatus. After reduction was complete, the catalyst was removed by filtration through celite and the resulting solution was immediately combined with dicyclohexylcarbodiimide (0.49 g, 2.38 mmol), 1-hydroxybenzotriazole mono-hydrate (0.32 g, 2.37 mmol), the product of Preparation 1L (0.93 g, 2.39 mmol) and additional tetrahydrofuran (60 mL). After stirring overnight at ambient temperature, the mixture was concentrated and the residue slurried in ethyl acetate and filtered. The filtrate was concentrated and the residue purified by silica gel chromatography (chloroform/methanol) to provide 0.76 g (50%) of the desired product as an off white solid which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.C C. C. (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid To a solution of 1.03 g (2.64 mmol) of 2B in 10 mL of THF was added 381 mg (9.1 mmol) of lithium hydroxide hydrate in 2 mL of water and the mixture was stirred overnight at room temperature. Excess THF was removed by evaporation, and the basic aqueous mixture was extracted three times with ethyl acetate, and then acidified to pH 4 with dilute acetic or hydrochloric acid. The product was extracted with ethyl acetate and the combined organic extracts were washed with brine, dried over MgSO4 and evaporated to give 1.03 g of 2C as an orange foam. MS (Cl, NH3) 390 (MH+). 1H NMR (CDCl3 300 MHz) δ7.61 (d, 1H), 7.48 (d, 1H), 7.27 (t, 1H), 7.10 (t, 1H), 4.81 (bs, 1H), 3.35 (m, 1H), 1.49 (s, 6H), 1.32 (s, 9H). | ||
4.C C. C. (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid The product from 4B was hydrolyzed according to the method described in General Procedure D to give 1.03 g of 4C as an orange foam. 1 H NMR (CDCl3 300 MHz) δ 7.61 (d, 1H), 7.48 (d,1H), 7.27 (t,1H), 7.10 (t, 1H), 4.81 (bs, 1H), 3.35 (m, 1H), 1.49 (s, 6H), 1.32 (s, 9H). MS (Cl, NH3) 390 (MH+) | ||
2.C C. C. (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1 H-indol-3-yl)-propionic acid To a solution of 1.03 g (2.64 mmol) of 2 B in 10 mL of THF was added 381 mg (9.1 mmol) of lithium hydroxide hydrate in 2 mL of water and the mixture was stirred overnight at room temperature. Excess THF was removed by evaporation, and the basic aqueous mixture was extracted three times with ethyl acetate, and then acidified to pH 4 with dilute acetic or hydrochloric acid. The product was extracted with ethyl acetate and the combined organic extracts were washed with brine, dried over MgSO4 and evaporated to give 1.03 g of 2 C as an orange foam. MS (Cl, NH3) 390 (MH+). 1 H NMR (CDCl3 300 MHz)δ 7.61 (d, 1 H), 7.48 (d, 1 H), 7.27 (t, 1 H), 7.10 (t, 1 H), 4.81 (bs, 1 H), 3.35 (m, 1 H), 1.49 (s, 6 H), 1.32 (s, 9 H). |
16.C C. C. (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid To a stirring solution of 30.6 g (0.15 mol) of D-trypotophan, 30.4 g (0.30 mol) of N-methylmorpholine in 450 mL of (4:1) dioxane:water, was added 45.0 g (0.15 mol) of 14E and the mixture was stirred for about 72 h. Excess dioxane was removed by evaporation and water and ethyl acetate were added to the mixture. The pH of the solution was adjusted to 3 with concentrated HCl and the layers were separated. The organic layer was washed with water and brine, dried over MgSO4 and concentrated. The residue was crystallized from ethyl acetate/hexanes to give 37.0 g of an off-white solid. | ||
102% | 6.D Step D Step D (R)-α-[(2-t-Butoxycarbonylamino-2-methyl-1-oxopropyl)amino]-1H-indole-3-propanoic acid The benzyl ester (0.82 g, 1.71 mmol) obtained in Step C and 10% palladium on carbon (150 mg) were stirred together in ethyl acetate (5 mL). The solution was degassed and a hydrogen atmosphere introduced over the reactants using a balloon for 32 hours. The reaction products were isolated by filtering the reaction mixture through a Celite plug. The plug was washed with additional ethyl acetate (3*10 mL). The combined filtrates were evaporated under vacuum to afford the product (680 mg, 102%). 1 H NMR (400 MHz, CDCl3): 1.30 (s, 9H), 1.41 (s, 6H), 3.32 (dd, 1H), 3.42 (m, 1H), 4.87 (br s, 1H), 6.82 (d, 1H), 7.13-7.35 (m, 8H), 7.60 (d, 1H), 8.28 (br s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 4-methyl-morpholine In 1,4-dioxane; water; ethyl acetate | 16.C C. C. (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid To a stirring solution of 30.6 g (0.15 mol) of D-tryptophan, 30.4 g (0.30 mol) of N-methylmorpholine in 450 mL of (4:1) dioxane:water, was added 45.0 g (0.15 mol) of 14E and the mixture was stirred for about 72 h. Excess dioxane was removed by evaporation and water and ethyl acetate were added to the mixture. The pH of the solution was adjusted to 3 with concentrated HCl and the layers were separated. The organic layer was washed with water and brine, dried over MgSO4 and concentrated. The residue was crystallized from ethyl acetate/hexanes to give 37.0 g of an off-white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
13 N-[1(R)-[(3,4-dihydro-6-methanesulfonylamino-4-oxo-spiro[2H-1-benzopyran-2,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-amino-2-methylpropanamide hydrochloride EXAMPLE 13 N-[1(R)-[(3,4-dihydro-6-methanesulfonylamino-4-oxo-spiro[2H-1-benzopyran-2,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-amino-2-methylpropanamide hydrochloride The title compound was prepared from α(R)-[[2-[[(1,1-dimethylethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid and 3,4-dihydro-6-methanesulfonylamino-4-oxo-spiro[2H-1-benzopyran-2,4'-piperidine]following procedures described in Example 10, Steps A and B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; 1,2-dichloro-ethane | 17.C N-[1(R)-[(spiro[9H-fluorene-9,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1-dimethylethyloxy)carbonyl]amino]-2-methylpropanamide Step C N-[1(R)-[(spiro[9H-fluorene-9,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1-dimethylethyloxy)carbonyl]amino]-2-methylpropanamide The title compound was prepared by the procedure described in Example 15, Step D using the intermediate from the previous step (275 mg, 1.162 mmol), α(R)-[[2-[[(1,1-dimethylethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid (453 mg, 1.16 mmol), HOBT (156 mg, 1.16 mmol), and EDC (223 mg, 1.16 mmol). Reaction time: 30 minutes. Yield: 371 mg (53%). 1 H NMR (400 MHz, CDCl3): δ8.225 (br. s, 1H), 7.698-7.159 (m, 13H), 6.610 (d, 1H), 5.348-5.265 (m, 1H), 5.020 (br. s, 1H), 3.988-3.905 (m, 1H), 3.595-3.502 (m, 2H) 3.365-3.296 (m, 1H), 3.189 (t, 1H), 1.718-1.655 (m, 1H), 1.545, 1.518, (2s, 6H), 1.611-1.281 (m, 3H), 1.467 (s, 9H), 0.932-0.865 (m, 1H). FAB-MS calc. for C37 H42 N4 O4 606; found 607 (M+H, 23%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21 mg (81%) | With benzotriazol-1-ol; 1,2-dichloro-ethane | 5.A Step A Step A N-[1(R)-[(3-hydrospiro[1H-isobenzofuran-1,4'-piperidin]-1'-yl)-carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1-dimethyl -ethyloxy)carbonyl]amino]-2-methylpropanamide Prepared by the procedure described in Example 3, Step B. 3-Hydrospiro[1H-isobenzofuran-1,4'-piperidine]hydrochloride (10 mg, 0.044 mmol), (Bauer et al U.S. Pat. No. 3,985,889) α(R)-[[2-[[(1,1-dimethyl-ethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid (20 mg, 0.051 mmol), HOBT (1 eq.), N-methyl-morpholine (0.01 mL, 0.093 mmol), and EDC (20 mg, 0.10 mmol). Reaction time: 5 hours. Yield: 21 mg (81%). The product exists as a mixture of two conformers (1:1): (1 H NMR CDCl3): δ5 8.096 (s, 1 H), 7.689 (t, 1 H), 7.341 (d, 1 H), 7.244-6.611 (m, 6 H), 5.288-5.202 (m, 1/2H), 4.945 (br. s, 1/2H), 4.161 (d, 1/2H), 4.003 (d, 1/2H), 3.338 (d, 1/2H), 3.280-3.115 (m, 2 H), 3.005-2.861 (m, 1 H), 2.751 (d, 1/2H), 2.416 (d, 1/2H), 1.787-1.549 (m 3 1/2H), 1.491, 1.461, 1.421, 1.410 (4s, 12 H), 1.281-1.212 (m, 3 H), 0.857 (t, 6 H). FAB-MS calc. for C32 H40 N4 O5 560; found 561 (M+H, 33%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34 mg (86%) | With benzotriazol-1-ol; 1,2-dichloro-ethane | 6.A Step A Step A N-[1(R)-[(3,4-dihydro-6-methyl-4-oxospiro[2H-1-benzopyran-2,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1 -dimethylethyloxy)carbonyl]amino]-2-methylpropanamide Prepared by the procedure described in Example 3, Step B. 3,4-Dihydro-6-methylspiro[2H- 1 -benzopyran-2,4'-piperidine]-4-one hydrochloride (20 mg, 0.058 mmol), (Hashigaki et al Chem. Pharm. Bull. 32 pg 3561-3568 (1984)) α(R)-[[2-[[(1,1-dimethylethoxy)-carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3propanoic acid) (32 mg, 0.082 mmol), HOBT (1 eq.), N-methyl morpholine (0.03 mL, 0.28 mmol), and EDC (40 mg, 0.21 mmol). Reaction time: 8 hours. Yield: 34 mg (86%). 1 H NMR (400 MHz, CDCl3): The product exists as a mixture of two conformers (2:1): δ8.154 (s, 2/3H), 8.088 (s, 1/3H), 7.626 (d, 2/3H), 7.591-7.060 (m, 6 H), 6.725-6.688 (m, 2/3H), 5.265-5.168 (m, 2/3H), 4.985-4.900 (m, 2/3H), 4.289-4.178 (m, 2/3H), 3.469 (s, 2/3H), 3.229-3.064 (m, 2 2/3H), 2.730 (t, 2/3H), 2.562 (s, 2 1/3H), 2.251 (d, 2 1/3H), 2.158 (d, 2/3H), 2.068 (d, 2/3H), 1.680-1.541 (m, 3 H), 1.502, 1.475, 1.454, 1.427, 1.402 (5s, 15 H), 1.292-1.226 (m, 3 H), 0.616-0.532 (m, 1/3H), -0.495 -0.590 (m, 1/3H). FAB-MS calc. for C34 H42 N4 O6 602; found 603. (M+H, 37%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
9.2 mg (86%) | With benzotriazol-1-ol; 1,2-dichloro-ethane | 10.B Step B Step B N-[1(R)-[(1,4-dihydro-4-phenyl-1-oxospiro[3H-2-benzopyran-3,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1-dimethylethyloxy)carbonyl]amino]-2-methylpropanamide Prepared by the procedure described in Example 3, Step B. The intermediate from previous Step (5 mg, 0.017 mmol), α(R)-[[2-[[(1,1-dimethylethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid (12 mg, 0.030 mmol), HOBT (1 eq.), N-methyl morpholine (1 eq.), and EDC (12 mg, 0.060 mmol). Reaction time: 5 hours. Yield: 9.2 mg (86%). 1 H NMR(400 MHz, CD3 OD): The product exists as a mixture of two conformers (1:1): δ8.185-8.072 (m, 1 1/2H), 7.885 (s, 1/2H), 7.710- 6.813 (m; 12 H), 5.331-5.309 (m; 1/2H), 5.198-5.111 (m, 1/2H), 4.710-4.605 (m, 1/2H), 4.300-4.235 (m, 1/2H), 3.876 (d, 1/2H), 3.719-3.617 (m, 1 H), 3.355-3.046 (m; 1 1/2H) 2.746 (q, 1/2H), 2.006-1.960 (m, 1 H), 1.678-1.574 (m, 2 H), 1.438, -1.368 (m, 6 H), 1.257, 1.240, 1.227, 1.208, 1.186 (5s, 5 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With 4-methyl-morpholine; hydrogenchloride; benzotriazol-1-ol; 1,2-dichloro-ethane; In hexane; dichloromethane; ethyl acetate; | Step A N-[1(R)-[(spiro[1H-indene-1,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl]-2-[[(1,1-dimethylethyloxy)carbonyl]amino ]-2-methylpropanamide To a stirred solution of alpha(R)-[[2-[[(1,1-dimethylethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid (50 mg, 0.13 mmol), (Example 4, Step D) spiro[1H-indene-1,4'-piperidine]hydrochloride (28.5 mg, 0.13 mmol) (Chambers, M. et al, J. Med. Chem. 1992, 35, 2033-2039), HOBT (17.3 mg, 0.13 mmol) and N-methylmorpholine (14.1 muL, 0.13 mmol) in dichloromethane (5 mL) at room temperature was added EDC (49.3 mg, 0.26 mmol). The reaction mixture was stirred for four hours and poured into a mixture of brine (10 mL) and HCl (3N, 1 mL). The mixture was extracted with ethyl acetate (20 mL) and the organic extract was dried (MgSO4) and evaporated. The residue was purified by silica gel column eluding with a solvent gradient of 40-60% ethyl acetate in hexane to give the product (63.6 mg, 89%). 1 H NMR (400 MHz, CDCl3): compound exists as a mixture of conformers (ratio 2:1): delta8.28, 8.24 (2 br. s, 1H), 7.74, 7.62 (2d, 7.7 Hz, 1H), 7.62, 7.39 (2d, 8.0 Hz, 1H), 7.30-7.10 (m, 7H), 6.68-6.30 (m, 2H), 5.35-5.20 (2m, 1H), 5.00 (br. s, 1H), 4.45-4.36 (m, 1H), 3.62, 3.53 (br. d, 14 Hz, 1H), 3.30-3.00 (m, 2H), 2.86-2.71 (m, 1H), 2.42-2.23 (m, 1/3H), 1.71 (v. br. s, 2H), 1.51, 1.49, 1.47 (3s, 6H), 1.44, 1.43, (2s, 9H), 1.40-1.07 (m, 2H), 0.88, 0.72 (2 br. d, 1H), 0.42 (dt, 4 Hz, 12 Hz, 1/3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51.E Step E Step E N-[1(R)-[(2-Methylspiro[isoindolin-1-one-3,4'-piperidin]-1'-yl)carbonyl]-2-(indol-3-yl)ethyl ]-2-[[(1,1-dimethylethyloxy)carbonyl]amino]-2-methylpropanamide The compound was prepared according to standard peptide coupling technology from α(R)-[[2-[[(1,1-dimethylethoxy)carbonyl]amino]-2,2-dimethyl-1-oxoethyl]amino]-1H-indole-3-propanoic acid (25 mg) and the product from Step B 1 H NMR (400 MHz, CDCl3): δ8.58, 8.44 (2 br. s, 1H), 7.80-7.15, 6.44 (m, d, J=7.6Hz, total 10H), 5.43-5.36, 5.22-5.15, (2m, 1H), 4.98 (br. s, 1H), 4.60-4.50 (br. m, 1H), 3.64-3.50 (br. m, 1H), 3.40-3.05, 2.72-2.64, (2m, 4H), 2.88, 2.51 (2s, 3H), 2.00-1.90 (m, 2H), 1.52, 1.51 (2s, 3H), 1.49 (s, 3H), 1.45, 1.44 (2s, 9H), 1.40-0.40 (several m, 2H). FAB-MS calc. for C33 H41 N5 O5, 587; found 588 (M+H), 532, 488. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | In methanol; dichloromethane | 4 Ethyl 2-[4-((2R)-2-{2-[(Tert-butoxy)carbonylamino]-2-methyl propanoylamino}-3-indol-3-ylpropanoylamino)imidazolyl]-2-phenylacetate Preparation 4 Ethyl 2-[4-((2R)-2-{2-[(Tert-butoxy)carbonylamino]-2-methyl propanoylamino}-3-indol-3-ylpropanoylamino)imidazolyl]-2-phenylacetate This compound was obtained from the reduction of ethyl 2-(4-nitroimidazolyl)-2-phenylacetate and subsequent reaction with (2R)-2-{2-[(tert-butoxy)carbonylamino]-2-methyl propanoylamino}-3-indole-3-ylpropanoic acid as a yellow foam in 73% yield after purification by flash chromatography using dichloromethane:methanol (19:1) as the eluent. MS (FIA) m/z 617.5 [(M+H)+]. 1H nmr (CDCl3): δ1.19-1.32 (m, 18H), 3.10-3.12 (m, 1H), 3.16-3.17 (m, 1H), 3.32 (s, 1H), 4.22-4.27 (m, 2H), 4.69 (s, broad, 1H), 6.44 (s, 1H), 6.85-6.91 (m, 2H), 7.00 (t, 1H), 7.07-7.08 (m, 1H), 7.38-7.40 (m, 1H), 7.42-7.45 (m, 6H), 7.55-7.56 (m, 2H), 10.16 (s, broad, 1H), 10.75 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | In water | 1 N-((1R)-2-indol-3-yl-1-{N-[1-(2-oxo-1-phenyl-2-pyrrolidinylethyl)imidazol-4-yl]carbamoyl}ethyl)-2-[(tert-butoxy)carbonylamino]-2-methylpropanamide Example 1 N-((1R)-2-indol-3-yl-1-{N-[1-(2-oxo-1-phenyl-2-pyrrolidinylethyl)imidazol-4-yl]carbamoyl}ethyl)-2-[(tert-butoxy)carbonylamino]-2-methylpropanamide N-Methyl morpholine (0.28 mL, 8.32 mm, 1 eq) was added to a stirred slurry of 2-chloro-4,6-dimethoxy-1,3,5-triazine (0.46 g, 2.57 mm, 1 eq) and (2R)-2-{2-[(tert-butoxy)carbonylamino]-2-methylpropanoylamino}-3-indol-3-ylpropanoic acid (1 g, 2.57 mm) in 10 mL of anhydrous tetrahydrofuran cooled to less than 0° C. After 1.5 hours, 2-(4-aminoimidazolyl)-2-phenyl-1-pyrrolidinylethan-1-one, hydrochloride (0.97 g, 2.82 mm, 1.1 eq) was added and stirring was continued at ice bath temperatures. The reaction was stirred for 4 hours and quenched by the addition of 15 mL of deionized water and ethyl acetate. The ethyl acetate layer was washed with a saturated sodium bicarbonate solution, dried over magnesium sulfate and the volatiles were removed under vacuum to give the crude product as a light purple foam (1.4 g, 84%) The crude product was purified by preparative chromatography to provide 0.52 g (31.5%) of the product as a foam. 1H nmr (CDCl3): δ1.10-1.40 (m, 15H), 1.67-1.92 (m, 3H), 2.92-3.60 (m, % H), 4.90 (s, broad, 1H), 5.33 (s, broad, 1H), 5.85 (d, 1H), 6.80-7.05 (m, 3H), 7.13-7.39 (m, 10H), 7.44-7.80 (m, 2H), 8.96 (s, broad, 1H), 10.20 (s, broad, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | Stage #1: 2-(4-nitroimidazolyl)-2-phenylacetic acid Stage #2: (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid | 1.1T.R5 This compound was obtained from the reduction of ethyl 2-(4-nitroimidazolyl)-2-phenylacetate and subsequent reaction with (2R)-2-{2-[(tert-butoxy) carbonylaminol]-2-methyl propanoylamino}-3-indole-3-ylpropanoic acid as a yellow foam in 73% yield after purification by flash chromatography using dichloromethane: methanol (19:1) as the eluent. MS (FIA) m/z 617.5 [(M+H)+]. 1H nmr (CDCl3): δ 1.19-1.32 (m, 18H), 3.10-3.12 (m, 1H), 3.16-3.17 (m, 1H), 3.32 (s, 1H), 4.22-4.27 (m, 2H), 4.69 (s, broad, 1H), 6.44 (s, 1H), 6.85-6.91 (m, 2H), 7.00 (t, 1H), 7.07-7.08 (m, 1H), 7.38-7.40 (m, 1H), 7.42-7.45 (m, 6H), 7.55-7.56 (m, 2H), 10.16 (s, broad, 1H), 10.75 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31.5% | Stage #1: (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid With 4-methyl-morpholine; 2-chloro-4,6-dimethoxy-1 ,3,5-triazine In tetrahydrofuran at 0℃; for 1.5h; Stage #2: 2-(4-amino imidazolyl)-2-phenyl-1-pyrrolidinylethan-1-one dihydrochloride In tetrahydrofuran at 0℃; for 4h; | 2-51 N-Methyl morpholine (0.28 mL, 8.32 mm, 1 eq) was added to a stirred slurry of 2-chloro-4,6-dimethoxy-1,3,5-triazine (0.46 g, 2.57 mm, 1 eq) and (2R)-2-(2-[(tert-butoxy)carbonylamino]-2-methylpropanoylamino}-3-indol-3-ylpropanoic acid (1 g, 2.57 mm) in 10 mL of anhydrous tetrahydrofuran cooled to less than 0° C. After 1.5 hours, 2-(4-aminoimidazolyl)-2-phenyl-1-pyrrolidinylethan-1-one, hydrochloride (0.97 g, 2.82 mm, 1.1 eq) was added and stirring was continued at ice bath temperatures. The reaction was stirred for 4 hours and quenched by the addition of 15 mL of deionized water and ethyl acetate. The ethyl acetate layer was washed with a saturated sodium bicarbonate solution, dried over magnesium sulfate and the volatiles were removed under vacuum to give the crude product as a light purple foam (1.4 g, 84%) The crude product was purified by preparative chromatography to provide 0.52 g (31.5%) of the product as a foam. 1H nmr (CDCl3): δ 1.10-1.40 (m, 15H), 1.67-1.92 (m, 3H), 2.92-3.60 (m, %H), 4.90 (s, broad, 1H), 5.33 (s, broad, 1H), 5.85 (d, 1H), 6.80-7.05 (m, 3H), 7.13-7.39 (m, 10H), 7.44-7.80 (m, 2H), 8.96 (s, broad, 1H), 10.20 (s, broad, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: N-ethyl-N,N-diisopropylamine; 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide / N,N-dimethyl-formamide / 24 h / 20 °C 2: trifluoroacetic acid / dichloromethane / 20.75 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 24h; | 1.9.1 A mixture comprising 4-(4-fluorophenyl)-2-methyl-2,7-diazaspiro[4.5]decan-1-one (ASW MedChem) (269 mg, 0.899 mmol), (R)-2-(2-(tert-butoxycarbonylamino)-2-methylpropanamido)-3-(1H-indol-3-yl)propanoic acid (Intermediate 3C) (350 mg, 0.899 mmol) and DIPEA (0.628 ml, 3.59 mmol) in DMF (4 ml) was treated with T3P (50% in DMF, 0.525 ml, 1.797 mmol) and stirred at RT for 24 hours. The reaction mixture was diluted with water (5 ml) and extracted with EtOAc. The organic portion was dried (MgSO4) and concentrated in vacuo. Purification of the crude product by chromatography on silica eluting with 1% MeOH in DCM afforded the title compound;LC-MS Rt 2.57 mins; MS m/z 634 [M+H]+; Method LowpH_v002. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 2.33333h; | 3.0.1 A mixture comprising (R)-3-(benzyloxy)-2-(2-(tert-butoxycarbonylamino)-2-methyl propanamido)propanoic acid (Intermediate 3A) (300 mg, 0.789 mmol), rac-2-methyl-3-phenyl-2,6-diazaspiro[3.5]nonan-1-one (Intermediate 2A) (182 mg, 0.789 mmol) and DIPEA (0.551 ml, 3.15 mmol) in DMF (4 ml) was treated with T3P (amide coupling agent 50% in DMF, 0.460 ml, 1.577 mmol) and stirred at RT for 17 hours. The reaction mixture was diluted with water (5 ml) and extracted with EtOAc. The organic portion was dried (MgSO4) and concentrated in vacuo. Purification of the crude product by chromatography on silica eluting with 1% MeOH in DCM afforded the title compound;LC-MS Rt 2.45 mins; MS m/z 594[M+H]+; Method LowpH_v002. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: N-ethyl-N,N-diisopropylamine; 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide / N,N-dimethyl-formamide / 2.33 h / 20 °C 2: trifluoroacetic acid / dichloromethane / 17 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Stage #1: (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride In dichloromethane at 0℃; for 0.5h; Stage #2: 2'-oxa-1,2,3,5,6,7-hexahydrospiro-4H-azepine-4,3'-3H-indole With N-ethyl-N,N-diisopropylamine In dichloromethane at 25℃; for 15h; | 6.2.6 General procedure for the coupling reaction General procedure: N-Boc protected amino acid or N-Boc-Aib-TrpOH (0.57 mmol) was suspended in CH2Cl2 (2.5 mL) at 0 °C. EDC·HCl (248 mg, 1.3 mmol) and HOBt (175 mg, 1.3 mmol) were added to the mixture that was stirred for 30 min. Compound 6a or 6b or 10a or 11a (0.52 mmol), suspended in CH2Cl2 (2.5 mL) and DIPEA (222 μL 0.57 mmol), were added in sequence to the reaction mixture containing activated amino acid and the mixture was warmed at 25 °C under stirring for 15 h (TLC: CH2Cl2/MeOH, 10:1). The organic layer was washed with H2O (1.5 mL) and dried over Na2SO4. The solvent was evaporated. The crude mixture was purified on silica gel (CH2Cl2/MeOH, from 1:0 to 100:1). Yields are reported in Table 3. It is possible to separate the mixture of (-)-8a/(+)-9a using flash chromatography (cyclohexane/AcOEt, 1:1), while any attempt to separate 8b/9b and 12b/13b mixture failed. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Stage #1: (R)-2-(2-tert-Butoxycarbonylamino-2-methyl-propionylamino)-3-(1H-indol-3-yl)-propionic acid With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; 3-hydroxy-3,4-dihydrobenzotriazine-4-one In dichloromethane at 20℃; Stage #2: C16H25N3O*2ClH In dichloromethane at 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; triethylamine; 3-hydroxy-3,4-dihydrobenzotriazine-4-one In dichloromethane at 25℃; for 20h; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
at 38℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.48 kg | With sodium hydroxide In tert-butyl methyl ether; water at 20℃; Large scale; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1.1: 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 20 °C 1.2: 20 °C 2.1: hydrogenchloride / ethyl acetate 3.1: sodium carbonate / dichloromethane | ||
Multi-step reaction with 3 steps 1: triethylamine; 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 20 h / 25 °C / Inert atmosphere 2: hydrogenchloride / ethyl acetate 3: sodium carbonate / dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 20 °C 1.2: 20 °C 2.1: hydrogenchloride / ethyl acetate | ||
Multi-step reaction with 2 steps 1: triethylamine; 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 20 h / 25 °C / Inert atmosphere 2: hydrogenchloride / ethyl acetate |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: triethylamine; 3-hydroxy-3,4-dihydrobenzotriazine-4-one; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride / dichloromethane / 3 h / 38 °C / Inert atmosphere; Large scale 2: sodium hydroxide / water; tert-butyl methyl ether / 20 °C / Large scale |