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CAS No. : | 34957-73-8 | MDL No. : | MFCD00191518 |
Formula : | C10H20O3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | RIZOOQYPYGPBOC-UHFFFAOYSA-N |
M.W : | 188.26 g/mol | Pubchem ID : | 292983 |
Synonyms : |
|
Num. heavy atoms : | 13 |
Num. arom. heavy atoms : | 0 |
Fraction Csp3 : | 0.9 |
Num. rotatable bonds : | 9 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 52.63 |
TPSA : | 46.53 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -5.83 cm/s |
Log Po/w (iLOGP) : | 2.39 |
Log Po/w (XLOGP3) : | 2.28 |
Log Po/w (WLOGP) : | 1.88 |
Log Po/w (MLOGP) : | 1.7 |
Log Po/w (SILICOS-IT) : | 2.24 |
Consensus Log Po/w : | 2.1 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.85 |
Solubility : | 2.66 mg/ml ; 0.0141 mol/l |
Class : | Very soluble |
Log S (Ali) : | -2.89 |
Solubility : | 0.24 mg/ml ; 0.00128 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.62 |
Solubility : | 0.45 mg/ml ; 0.00239 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 1.81 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P273-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H319-H412 | Packing Group: | N/A |
GHS Pictogram: |
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* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
46% | With sulfuric acid; for 5.0h;Reflux; | To a solution of <strong>[3788-56-5]9-hydroxynonanoic acid</strong> (2) (1.0 g, 5.74 mmol, 1.0 eq) in methanol (30 mL) was added sulfuric acid (1 mL). The reaction mixture was heated to reflux for 5 h. Then the mixture was concentrated under reduced pressure and the residue was diluted with water (15 mL) and ethyl acetate (10 mL). The aqueous layer was back-extracted with additional ethyl acetate (2 x 10 mL). The combined organic layers were washed with brine and dried over anhydrous Na2SC>4. The solvent was removed under reduced pressure and the crude was purified by column chromatography (PE/EA (petroleum ether/ethyl acetate) = 10: 1) to give methyl 9-hydroxynonanoate (3) (500 mg, 46%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With Celite; pyridinium chlorochromate In dichloromethane at 20℃; for 3.5h; | |
90% | With Dess-Martin periodane In dichloromethane at 0℃; | 2 To a solution of methyl 9-hydroxy nonanoate (1g) in dichloromethane (8ml) at 0°C was added Dess- Martin periodinane (1.7 equiv; 3.83g). The ice bath was removed after 10 minutes, and the reaction was allowed to proceed for up to 2 hours (until no starting material remained by TLC). The reaction was diluted with 200ml of 10% ethyl acetate/hexane, and it was immediately poured onto silica gel. Elution with the same solvent produced the product aldehyde in 90% yield (890mg). |
87% | With pyridinium chlorochromate In dichloromethane at 20℃; for 3h; Inert atmosphere; Molecular sieve; |
83% | With Celite; pyridinium chlorochromate In dichloromethane at 20℃; for 4h; | |
81% | With 4 A molecular sieve; pyridinium chlorochromate In dichloromethane at 25℃; for 2.5h; | |
81% | With dipyridinium dichromate; Celite In dichloromethane at 20℃; for 4h; | |
80% | With Celite; pyridinium chlorochromate In dichloromethane at 24 - 26℃; for 2h; | |
71% | With pyridinium chlorochromate In dichloromethane | |
61% | With pyridinium chlorochromate In dichloromethane | |
60% | With pyridinium chlorochromate In dichloromethane for 4h; Inert atmosphere; | |
With pyridinium chlorochromate In dichloromethane | ||
With Celite; pyridinium chlorochromate In dichloromethane for 2h; Yield given; | ||
With oxalyl dichloride; dimethyl sulfoxide; triethylamine 1.) CH2Cl2, -78 deg C, 2 h, 2.) CH2Cl2, -78 deg C to room temp.; Yield given. Multistep reaction; | ||
With oxalyl dichloride; dimethyl sulfoxide; triethylamine | ||
With pyridinium chlorochromate In dichloromethane at 20℃; for 15h; | 11.2 Step 2; 9-Oxo-nonanoic acid methyl ester; To a solution of 5.2 g (28 mmol) 9-Hydroxy-nonanoic acid methyl ester in 350 mL DCM is added 9.1 g (41 mmol) Pyridinium chlorochromate and the reaction is stirred for 15 h at rt. The reaction is diluted with DCM, silica is added, the mixture is filtered through a pad of Hyflo and thoroughly washed with DCM. The solvent is removed in vacuo to give the title compound as a green oil, which is used without further purification. MS (method D): 204 [M+H2O] | |
35.3 g | With manganese(IV) oxide In ethyl acetate at 50℃; for 8h; | 1-6 Preparation of methyl 9-oxononanoate Methyl 9-hydroxydecanoate (37.6 g, 0.2 mol) and MnO2 (17.4 g, 0.2 mol) were placed in a reaction kettle, 200 ml of ethyl acetate was added, stirring was started, 180 rpm, temperature 50 ° C, real-time monitoring The reaction was carried out, and after 8 h, it was cooled to room temperature, filtered, and the solvent was evaporated under reduced pressure to give 35.3 g of white solid product |
With sodium hydrogencarbonate; Dess-Martin periodane In dichloromethane at 20℃; for 1h; Inert atmosphere; | Synthesis of compound 2: methyl dec-9-ynoate Methyl 9-hydroxynonanoate (10, 4.00 mmol, 0.753 g) was dissolved in CH2Cl2 (16 mL) and added NaHCO3 (8.00 mmol, 0.672 g, 2.00 equiv.) and Dess-Martin periodinane (4.80 mmol, 2.21 g, 1.30 equiv.). The mixture was stirred at room temperature for one hour under argon, and was then diluted with heptane (80 mL). The resulting mixture was filtered and the filtrate was then passed through a pad of silica gel (3 cm). The silica pad was rinsed with solvent (EtOAc:heptane, 1:4, 200 mL) and the filtrate evaporated in vacuo. The residue was dissolved in dry methanol (40.0 mL). K2CO3 (8.0 mmol, 1.10 g) was added and the system was flushed with argon before dimethyl(1-diazo-2-oxo propyl) phosphonate (4.40 mmol, 1.1 equiv., 10.0 mL 10% in MeCN) was added. After stirring for two hours at room temperature, the mixture was diluted with Et2O (100 mL) and transferred to a separatory funnel. A solution of 5% aq. NaHCO3 (50 mL) was added and the layers were separated. The aqueous layer was extracted with Et2O (1x30 mL) and the organic extracts were combined and washed successively with 5% aq. NaHCO3 (3x30 mL), brine (1x30 mL), dried (MgSO4) and evaporated. The residue was purified by flash chromatography on silica gel (3-5% EtOAc in heptane) to afford the desired product 2 as a colorless oil in 57% yield (0.413 g) from 10. Rf=0.30 (EtOAc:heptane, 1:9. KMnO4-stain). 1H NMR (400 MHz, CDCl3) δ 3.62 (s, 3H), 2.26 (t, J = 7.5 Hz, 2H), 2.14 (td, J = 7.0, 2.6 Hz, 2H), 1.90 (t, J = 2.7 Hz, 1H), 1.65 - 1.53 (m, 2H), 1.53 - 1.43 (m, 2H), 1.32 (m, 6H). 13C NMR (101 MHz, CDCl3) δ 174.2, 84.6, 68.2, 51.5, 34.1, 29.0, 28.8, 28.6, 28.4, 24.9, 18.4. The spectroscopic data was in agreement with that reported in the literature | |
With pyridinium chlorochromate In dichloromethane at 20℃; for 1.41667h; Inert atmosphere; Cooling; | Preparation of 10 (methyl-9-oxo-nonanoate) 9(600 μl, 2.8 mmol) was added to a solution of PCC (900 mg, 4.2 mmol) in dry DCM (50 ml) under argon at -15° C., and the mixture was stirred for 45 min. Reaction progress was monitored by TLC. The reaction mixture was allowed to return to room temperature and was stirred for an additional 40 min. The mixture was then filtered over Celite, and the residue was washed with ether. The filtrate was concentrated in vacuo. Flash column chromatography on silica using a gradient of 0-100% ethyl acetate in hexanes afforded 10 at 70% purity (containing about 30% starting material) (305 mg, 1.64 mmol, 58% yield). 1H NMR (600 MHz, chloroform-d): δ (p.p.m.) 9.76 (t, 1.79 Hz, 1H), 3.66 (s, 3H), 2.42 (td, 7.30, 1.77 Hz, 2H), 2.30 (t, 7.60 Hz, 2H), 1.62 (m, 4H), 1.32 (m, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With pyridinium p-toluenesulfonate In dichloromethane at 20℃; | |
89% | With toluene-4-sulfonic acid In dichloromethane for 4h; Ambient temperature; | |
75% | With hydrogenchloride for 22h; Ambient temperature; |
With toluene-4-sulfonic acid In diethyl ether for 6h; Ambient temperature; | ||
With pyridinium p-toluenesulfonate In dichloromethane; water | R.8.2 Synthesis of methyl 9-(2-tetrahydropyranyloxy) nonanoate (66). [Reference Example 8-2] Synthesis of methyl 9-(2-tetrahydropyranyloxy) nonanoate (66). To a solution of methyl 9-hydroxynonate (65) (852 mg, 4.52 mmol) in dichloromethane (35 ml) were added dihydropyran (1.22 ml, 3.0 eq.) and pyridinium p-toluenesulfonate (PPTS, 352 mg, 0.3 eq.), and the mixture was stirred overnight at room temperature. The reaction mixture was mixed with water and extracted 3 times with dichloromethane. The organic layers were combined, washed with saturated aqueous sodium bicarbonate and brine, successively, dried over anhydrous sodium sulfate, filtered, and the solvent was evaporated in vacuo to give objective Compound 66 (1.37 g, quantitative) as colorless oil. 1H-NMR (270MHz, CDCl3): δ = 4.58 (1H, m, H-2 of THP), 3.88 (1H, m), 3.73 (1H, m), 3.67 (3H, s, OMe), 3.51 (1H, m), 3.38 (1H, m), 2.30 (2H, t, J=7.4 Hz, CH2CO), 1.88-1.46 (10H, m), and 1.31 (8H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With dmap; dicyclohexyl-carbodiimide In dichloromethane at 0 - 10℃; for 0.5h; | |
75% | With dmap; dicyclohexyl-carbodiimide |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
79% | With tributylphosphine In tetrahydrofuran for 0.5h; Ambient temperature; | |
73% | With tributylphosphine In tetrahydrofuran for 0.5h; Ambient temperature; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | With 2,4,6-trimethyl-pyridine; silver trifluoromethanesulfonate In nitromethane; toluene at -20℃; for 15h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With calcium sulfate; silver perchlorate; silver carbonate In dichloromethane at 0℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With triethylamine In dichloromethane at -10℃; for 1h; | |
69.1% | With triethylamine In benzene for 0.5h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | In dichloromethane at -15℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With calcium sulfate; trimethylsilyl trifluoromethanesulfonate In dichloromethane at 4 - 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With carbon tetrabromide; triphenylphosphine In dichloromethane at 5℃; | |
91% | With carbon tetrabromide; triphenylphosphine In dichloromethane at 0℃; for 12h; | |
89% | With pyridine; bromine; triphenylphosphine In dichloromethane at 0℃; for 2h; |
88% | With carbon tetrabromide; triphenylphosphine In toluene at 20℃; for 3h; | |
With pyridine; bromine; triphenylphosphine In dichloromethane for 0.5h; Ambient temperature; Yield given; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With sodium tetrahydroborate In ethanol for 0.25h; | |
93% | With 5%-palladium/activated carbon; hydrogen In methanol at 50℃; for 4h; Inert atmosphere; | |
72% | With sodium tetrahydroborate In methanol at 20 - 25℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With borane-THF; In tetrahydrofuran; at -20 - 20℃; for 4h; | [0418] To prepare 4, a solution of nonanedioic acid monomethyl ester (3) (923 mg, 4.6 mmol) in dry THF (3 ml) at -20C was treated with 1 M BH3 in THF (4.6 ml, 4.6 mmol) over 10 minutes. After stirring at room temperature for 4 hours, the reaction was quenched with 0.77 M aqueous K2C03 solution (10 ml) at 0C. The product was extracted with diethyl ether (3 x 20 ml), washed with saturated aqueous NaCl solution, dried over Na2S04, and concentrated in vacuum to afford methyl 9- hydroxynonanoate (4) (Kai K. et al, Tetrahedron 64:6760-69 (2008), which is hereby incorporated by reference in its entirety) (850 mg, 99% yield) as a colorless oil, which was used directly without any further purification. 1H NMR (400 MHz, chloroform-<ii): delta 1.27-1.37 (8H, m), 1.50-1.66 (4H, m), 2.29 (2H, t, J = 7.5 Hz), 3.62 (2H, t, J 3.66 (3H, s). See Figure 75 C. |
55% | With dimethylsulfide borane complex; In tetrahydrofuran; at -20 - 20℃; for 0.333333h; | Preparation of 9-Hydroxy-nonanoic acid methylester 4-BTo a solution of nonanedioic acid monomethyl ester (4.80 g,20 mmol) in THF (20 mE) at -20 C. was added a solution ofborane-dimethylsulfide in THF (2.0 M, 10 mE) over 10 mm.The resulting mixture was stirred for an additional 10 mm,and then allowed to stir at room temperature overnight. Aqueous K2C03 solution was added, and the product was extractedwith ethyl ether (3x). The crude product was purified by flashcolunm chromatography (hexane/EtOAc:2/1) to yield 9-hy-droxy-nonanoic acid methyl ester 4-B (2.0 g, 55%).iH NMR (CDC13) oe 4.86 (bs, 1H, OH), 3.67 (s, 3H), 3.63(t, J=7.4 Hz, 2H), 2.29 (t, J=7.4 Hz, 2H), 1.68-1.48 (m, 4H),1.40-1.24 (m, 8H). |
With potassium carbonate; In tetrahydrofuran; diethyl ether; water; | EXAMPLE 41 4-Hydroxy-3-[10-(4-chlorophenyl)-1-oxodecyl]-2(5H)-furanone To a solution of 165 mL (165 mmol) of a 1.0M solution of boranetetrahydrofuran complex in tetrahydrofuran in 200 mL of dry diethyl ether at 0 C. is added dropwise 25.0 g (123 mmol) of <strong>[2104-19-0]azelaic acid monomethyl ester</strong>, added at such a rate as to prevent excessive release of gas and exothermicity. The solution is allowed to warm to room temperature overnight and is worked up by slowly adding water until gas evolution ceases. Then solid potassium carbonate is added and the organic layer is separated. The aqueous layer is extracted three times with diethyl ether. The combined extracts are washed with brine, dried over Na2 SO4, filtered, and concentrated in vacuo to give 8-carbomethoxyoctan-1-ol as a colorless oil. |
With thionyl chloride; | [Reference Example 8-1] Synthesis of methyl 9-hydroxynonanoate (65). To commercially available <strong>[2104-19-0]azelaic acid monomethyl ester</strong> (2.02 g, 10 mmol) was added thionyl chloride (2.0 ml), and the mixture was refluxed for 5 hours under nitrogen atmosphere. The reaction mixture was cooled to room temperature, and excess thionyl chloride was evaporated to give a residue containing acid chloride 64 . This residue was dissolved in ether (10 ml) and added dropwise into a suspension of sodium borohydride-alumina complex (5.0 g) in ether (15 ml). After stirring for 12 hours at room temperature, the reaction mixture was filtered and was washed with ether. The filtrate was concentrated and resulting residue was purified by column chromatography over silica gel to give objective Compound 65 (1.59 g, Yield: 90%) as colorless oil. [see, Synthesis, 1978 : 891]. 1H-NMR (270MHz, CDCl3): delta = 3.67 (3H, s, CO2Me), 3.62 (2H, t, J=6.6 Hz, CH 2OH), 2.31 (2H, t, J=7.4 Hz, CH 2CO), 2.22 (1H, br.s, OH), 1.70-1.50 (4H, m, CH2x 2), and 1.31 (8H, m). | |
With hydrogenchloride; In tetrahydrofuran; diethyl ether; | Step A. Methyl 9-hydroxynonanoate A solution of 9-methoxy-9-oxononanoic acid (<strong>[2104-19-0]azelaic acid monomethyl ester</strong>) (40.45 g, 200 mmol) in tetrahydrofuran (200 mL) was treated via syringe with borane-methyl sulfide complex, 10.0 M (20 mL, 200 mmol) and warmed to 40 C. The reaction was stirred for one hour at ambient temperature. The excess borane reagent was destroyed with excess methanol and the solvent evaporated in vacuo to a residue. The residue was dissolved in diethyl ether and extracted sequentially with 2N hydrochloric acid and water. The organic phase was dried over anhydrous sodium sulfate, filtered through a short pad of silica gel, and the solvent evaporated in vacuo to yield the title compound (33.88 g, 180 mmol) as a viscous oil, which was used without further purification. 1H NMR (DMSO-d6, 300 MHz) delta 4.32 (t, J=5.2 Hz, 1H), 3.58 (s, 3H), 3.37 (td, J=6.7, 5.2 Hz, 2H), 2.48 (t, J=7.4 Hz, 2H), 1.58 (p, J=7.1 Hz, 2H), 1.40 (p, J=7.1 Hz, 2H), 1.26 (broad s, 8H) | |
Preparation of 9-{2-[((lR,2S)-l-[(2S,4R)-4-(7-Methoxy-2-phenyl-quinolin-4-yloxy)- pyrrolidine-2-carbonyl]-amino}-2-vinyl-cyclopropanecarbonyl)-sulfamoyl]- phenylaminoj-nonanoic acid; Step l; 9-Hydroxy-nonanoic acid methyl ester; To an ice-cold solution of 10.0 g (45 mmol) Mono-methyl azelate in 250 mL THF is added 90 mL (90 mmol) BH3*THF-Komplex (IM in THF), the ice-bath is removed and stirring is continued at rt for 90 min. The reaction is quenched by careful addition of Methanol, the main solvent is evaporated, the residue is diluted with water and extracted with EtOAc. The combined organic phase is dried with Na2SO4, filtered, and the solvent is removed in vacuo to give the title compound as a colorless oil, which is used without further purification. MS (method D): 206 [M+H2O] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran for 72h; Ambient temperature; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With 1H-imidazole In dichloromethane at 20℃; | 4.4.1 TBS-protected alcohol 11 To a stirred solution of 9-hydroxy nonanoate methyl ester (1.0g, 5.31mmol) in dry dichloromethane (5.3mL) was added imidazole (0.48g, 7.0mmol) and then TBSCl (1.1g, 7.0mmol). The resulting solution was stirred overnight at room temperature. Then, the mixture was quenched with water and extracted with dichloromethane (3×20mL). The organic layer was dried over Na2SO4 and concentrated under vacuum. Purification of the crude material on flash column chromatography, eluting with petroleum ether/diethyl ether 97/3, gave pure 11 (1.539g, 96%) as colourless oil. Compound (11): 1H NMR (CDCl3, 400MHz): δ 3.65 (3H, s, -OCH3), 3.58 (2H, t, J=6.5Hz), 2.29 (2H, t, J=7.7Hz), 1.61 (2H, m), 1.49 (2H, m), 1.29 (8H, m), 0.88 (9H, s), -0.03 (6H, s). 13C NMR (62.89MHz CDCl3): δ 174.3 (C), 63.2 (CH2), 21.4 (CH3), 34.1 (CH2), 32.8 (CH2), 29.2 (CH2), 29.1 (CH2), 26.0 (3 CH3), 25.7 (CH2), 24.9 (CH2), 18.3 (C), -5.3 (2 CH3). ES-MS (m/z): 325 [M+Na]+, 303 [M+H]+. |
85% | With 1H-imidazole In N,N-dimethyl-formamide for 24h; Ambient temperature; | |
With 1H-imidazole In dichloromethane | 3.1 Step 1. A solution of methyl 9-hydroxynonanoate (300 mg, 1.6 mmol), tert- butyldimethylchlorosilane (480 mg, 3.2 mmol), and imidazole (240 mg, 3.5 mmol) in DCM (5 mL) was allowed to stir overnight. Brine was added and the mixture was washed with DCM three times. The combined organic layers were dried over MgSO4, filtered and concentrated. Purification by silica gel column chromatography (0 - 50% EtOAc in hexanes) provided methyl 9-[tert-butyl(dimethyl)silyl]oxynonanoate. 1H NMR (400 MHz, Chloroform-d) δ 3.62 (s, 3H), 3.55 (t, J = 6.6 Hz, 2H), 2.26 (t, J = 7.5 Hz, 2H), 1.61 - 1.53 (m, 2H), 1.49 - 1.39 (m, 2H), 1.34 - 1.18 (m, 8H), 0.85 (s, 9H), -0.00 (s, 6H). |
With 1H-imidazole In dichloromethane | 3.1 Step 1. A solution of methyl 9-hydroxynonanoate (300 mg, 1.6 mmol), tert- butyldimethylchlorosilane (480 mg, 3.2 mmol), and imidazole (240 mg, 3.5 mmol) in DCM (5 mL) was allowed to stir overnight. Brine was added and the mixture was washed with DCM three times. The combined organic layers were dried over MgSO4, filtered and concentrated. Purification by silica gel column chromatography (0 - 50% EtOAc in hexanes) provided methyl 9-[tert-butyl(dimethyl)silyl]oxynonanoate. 1H NMR (400 MHz, Chloroform-d) δ 3.62 (s, 3H), 3.55 (t, J = 6.6 Hz, 2H), 2.26 (t, J = 7.5 Hz, 2H), 1.61 - 1.53 (m, 2H), 1.49 - 1.39 (m, 2H), 1.34 - 1.18 (m, 8H), 0.85 (s, 9H), -0.00 (s, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With triethylamine In dichloromethane at 0℃; for 1h; | |
68% | With pyridine In dichloromethane at 0 - 20℃; for 24h; | 1 Dichloromethane (20 mL) was added with methyl 9-hydroxynonanoate (2.1 g) and pyridine (1.8 g), stirred at 0°C, added with methanesulfonyl chloride (1.3 mL), gradually warmed to room temperature and stirred for one day. The reaction solution was added with water and then extracted twice with dichloromethane. The resulting organic layer was washed with 1 N hydrochloric acid and saturated sodium hydrogencarbonate solution. The organic layer was dried over anhydrous sodium sulfate, and then the solvent was removed. The resulting residue was purified by silica gel column chromatography to obtain methyl 9-(methanesulfonyloxy)nonanoate (2.1 g, yield: 68%). |
With triethylamine In dichloromethane at 0℃; for 0.5h; Yield given; |
With pyridine In dichloromethane at 0 - 20℃; | d1-4 Preparation of Compound d1-4 Methyl 9-hydroxynonanoate and pyridine were added to dichloromethane. The solution was stirred at 0°C, added with methanesulfonyl chloride, and further stirred with gradually warming up to room temperature. The solution was added with water, and extracted twice with dichloromethane. The resulting organic layer was washed with 1N hydrochloric acid and saturated sodium hydrogen carbonate. After the organic layer was dried over anhydrous sodium sulfate, the solvent was removed and the residue was purified by silica gel column chromatography to obtain methyl 9- (methane sulfonyloxy)nonanoate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With mercury(II) cyanide In benzene at 25℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With N-iodo-succinimide; 4 A molecular sieve; silver trifluoromethanesulfonate In dichloromethane; toluene at -20℃; for 0.166667h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With N-iodo-succinimide; 4 A molecular sieve; silver trifluoromethanesulfonate In dichloromethane; toluene at -20℃; for 0.166667h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With N-iodo-succinimide; 4 A molecular sieve; silver trifluoromethanesulfonate In dichloromethane; toluene at -20℃; for 0.166667h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With N-iodo-succinimide; 4 A molecular sieve; silver trifluoromethanesulfonate In dichloromethane; toluene at -20℃; for 0.166667h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With N-iodo-succinimide; 4 A molecular sieve; silver trifluoromethanesulfonate In dichloromethane; toluene at -20℃; for 0.166667h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | With boron trifluoride diethyl etherate Ambient temperature; | |
91% | With boron trifluoride diethyl etherate In dichloromethane for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | With boron trifluoride diethyl etherate In dichloromethane at -20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | With boron trifluoride diethyl etherate In dichloromethane at -20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With trifluoromethylsulfonic anhydride | |
77% | With trimethylsilyl trifluoromethanesulfonate; 4 Angstroems MS In dichloromethane at -20℃; for 5h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With boron trifluoride diethyl etherate In dichloromethane for 5h; Ambient temperature; | |
2.45 g (61%) | With trifluoroborane diethyl ether In dichloromethane | 1.1 Example 1 (1) Boron trifluoride etherate (4 ml, 32 mmol) was added to a solution of 1,2,3,4,6-penta-O-acetyl-α-D-glucopyranoside (2.5 g, 8.0 mmol) and 8-methoxycarbonyl octanol (3.0 g) in methylene chloride (30 ml). The mixture was stirred at room temperature for 5 hr. The reaction solution was washed with water and dried over magnesium sulfate. After filtration, the filtrate was concentrated to dryness under the reduced pressure. The oil thus obtained was purified by column chromatography on silica gel (toluene-acetone (9: 1)) to give 2.45 g (61%) of 8-methoxycarbonyloctyl 2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside. [α]D17+3.73° (c = 1.42, chloroform) 1H-NMR (CDCl3) δ: 1.56 (8H, s), 1.57-1.63 (4H, m), 2.01 (3H, s), 2.02 (3H, s), 2.04 (3H, s), 2.09 (3H, s), 2.30 (2H, t, J = 7.6 Hz), 3.46 (1H, dt, J = 9.5, 6.8 Hz), 3.67 (3H, s), 3.69 (1H, ddd, J = 2.4, 4.6, 9.8 Hz, H-5), 3.86 (1H, dt, J = 9.5, 6.4 Hz), 4.15 (1H, dd, J = 12.4, 2.4 Hz, H-6), 4.28 (1H,dd, J = 12.4, 4.6 Hz, H-6), 4.49 (1H, d, J = 8.1 Hz, H-1), 4.98 (1H, dd, J = 9.5, 8.1 Hz, H-2), 5.09 (1H, dd, J = 9.8, 9.5 Hz, H-4), 5.20 (1H, dd, J = 9.5, 9.5 Hz, H-3) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With trimethylsilyl trifluoromethanesulfonate; 4 A molecular sieve In dichloromethane at 20℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | at 20℃; for 24h; | |
55% | With sodium acetate at 120℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With 4 A molecular sieve; tin(IV) chloride In dichloromethane at 20℃; for 0.25h; | |
76% | With tin(IV) chloride |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With trimethylsilyl trifluoromethanesulfonate In dichloromethane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | Stage #1: methyl 9-hydroxynonanoate; 2,4,6-tri-O-acetyl-3,S-[2,4-di-O-acetyl-3,6-di-S-(2,3,4,6-tetra-O-acetyl-β-D-glucopyranosyl)-3,6-dithio-β-D-glucopyranosyl]-3-thio-α-D-glucopyranosyl bromide With 4 A molecular sieve at 20℃; for 0.5h; Stage #2: With silver trifluoromethanesulfonate In dichloromethane at -10℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | Stage #1: methyl 9-hydroxynonanoate; ethyl 3,4-O-isopropylidene-6-O-tert-butyldimethylsilyl-2-O-(3,3-di-tert-butyloxycarbonylpropyl)-1-thio-β-D-galactopyranoside With 2,6-di-tert-butyl-4-methylpyridine In toluene at 22℃; Stage #2: With dimethyl-(methylthio)-sulphonium trifluoromethanesulphonate In toluene |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | With 1H-imidazole In N,N-dimethyl-formamide at 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With 4 A molecular sieve; tin(IV) chloride In dichloromethane; toluene at 0℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With bis(trifluoromethanesulfonyl)amide; propiononitrile In dichloromethane at -78℃; for 1h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With N-Bromosuccinimide; 4 A molecular sieve; trifliric acid In dichloromethane at -20℃; for 1h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With N-Bromosuccinimide; trifluorormethanesulfonic acid; 4 A molecular sieve In dichloromethane at -20℃; for 1h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With 1H-imidazole; iodine; triphenylphosphine In dichloromethane at 0 - 20℃; for 2h; | |
Multi-step reaction with 2 steps 1: triethylamine / CH2Cl2 / 0.5 h / 0 °C 2: NaI / acetone / 1 h | ||
Multi-step reaction with 2 steps 1: triethylamine / dichloromethane / 1 h / 0 °C 2: sodium iodide / acetone / 12 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triphenylphosphine In dichloromethane | 13 13. 13. Methyl-9-bromo-nonanoate (13: Scheme 4) A solution of methyl-9-hydroxy-nonanoate (1.1 g, 5.85 mmol, 1.0 equiv) in CH2Cl2 (30 mL, 0.2 M) at 0° C. was treated successively with CBr4 (2.5 g, 7.54 mmol, 1.3 equiv) and PPh3 (2.15 g, 8.19 mmol, 1.4 equiv) and the reaction mixture was stirred at 4° C. for 10 h. The reaction mixture was then concenctrated under reduced pressure and washed repeatedly with Et2O (8*10 mL washes). The Et2O washes were combined and concentrated under reduced pressure. Chromatography (SiO2, 5 cm*15 cm, hexanes) afforded 13 as a clear, colorless oil (1.02 g, 1.47 g theorectical, 69.5%): 1H NMR (CDCl31 250 MHz) d 3.64 (s, 3H, C(O)OCH3), 3.38 (t, 2H, J=6.8 Hz, CH2Br), 2.29 (t, 2H, J=7.4 Hz CH2C(O)OCH3), 1.83 (p, 2H, CH2CH2Br), 1.63 (m, 2H, CH2CH2C(O)OCH3) 1.47-1.28 (m, 8H, alkyl protons). | |
With triphenylphosphine In dichloromethane | 20 20. 20. Methyl-9-bromo-nonanoate (Intermediate for Compound 100:) A solution of methyl-9-hydroxy-nonanoate (1.1 g, 5.85 mmol, 1.0 equiv) in CH2Cl2 (30 mL, 0.2 M) at 0° C. was treated successively with CBr4 (2.5 g, 7.54 mmol, 1.3 equiv) and PPh3 (2.15 g, 8.19 mmol, 1.4 equiv) and the reaction mixture was stirred at 4° C. for 10 h. The reaction mixture was then concenctrated under reduced pressure and washed repeatedly with Et2O (8*10 mL washes). The Et2O washes were combined and concentrated under reduced pressure. Chromatography (SiO2, 5 cm*15 cm, hexanes) afforded the intermediate as a clear, colorless oil (1.02 g, 1.47 g theorectical, 69.5%): 1H NMR (CDCl3, 250 MHz) d 3.64 (s, 3H, C(O)OCH3), 3.38 (t, 2H, J=6.8 Hz, CH2Br), 2.29 (t, 2H, J=7.4 Hz CH2C(O)OCH3), 1.83 (p, 2H, CH2CH2Br), 1.63 (m, 2H, CH2CH2C(O)OCH3) 1.47-1.28 (m, 8H, alkyl protons). | |
With triphenylphosphine In dichloromethane | Synthetic Methods methyl-9-bromo-nonanoate (13). A solution of methyl-9-hydroxy-nonanoate (1.1 g, 5.85 mmol, 1.0 equiv) in CH2 Cl2 (30 mL, 0.2M) at 0° C. was treated successively with CBr4 (2.5 g, 7.54 mmol, 1.3 equiv) and PPh3 (2.15 g, 8.19 mmol. 1.4 equiv) and the reaction mixture was stirred at 4° C. for 10 h. The reaction mixture was then concenctrated under reduced pressure and washed repeatedly with Et2 O (8*10 mL washes). The Et2 O washes were combined and concentrated under reduced pressure. Chromatography (SiO2, 5 cm*15 cm, hexanes) afforded 13 as a clear, colorless oil (1.02 g, 1.47 g theorectical, 69.5%): 1 H NMR (CDCl3, 250 MHz) d 3.64 (s, 3H, C(O)OCH3), 3.38 (t, 2H, J=6.8 Hz, CH2 Br), 2.29 (t, 2H, J=7.4 Hz CH2 C(O)OCH3), 1.83 (p, 2H, CH2 CH2 Br), 1.63 (m, 2H, CH2 CH2 C(O)OCH3) 1.47-1.28 (m, 8H, alkyl protons). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With hydrogenchloride In pyridine; methanol; water; sodium methylate; triethylamine | 7 Synthesis of 8-Methoxycarbonyloctyl-2-p-nitrobenzamido-4O-(β-D-galactopyranosyl)-2-deoxy-β-D-glucopyranose (30) 8-methoxycarbonyloctyl-2-amino-4-O-(β-D-galactopyranosyl)-2-deoxy-β-D-glucopyranose (28) (250 mg, 0.489 mmol), prepared by glycosylation of 2-azido-2-deoxy-3,6,2',3',4',6'-hexa-O-acetyl-α-D-lactopyranosyl bromide22 with 8-methoxycarbonyloctanol followed by reduction with H2 S in pyridine:triethylamine:water (4:1:0.1) and deacetylation, was added to pyridine (5 mL) followed by addition of p-nitrobenzoyl chloride (2.5 g). The reaction mixture was stirred for 15 hours at room temperature and then excess p-nitrobenzoyl chloride was destroyed by adding methanol (5 mL). The mixture was evaporated and the residue was diluted with dichloromethane (100 mL). This solution was washed with a 5% solution of hydrochloric acid (2*100 mL), aqueous sodium bicarbonate (2*100 mL) and water (2*100 mL), then dried over sodium sulfate, filtered and evaporated to dryness to give compound 29 which was used without further purification. Compound 29 was debenzoylated by dissolving the compound in sodium methoxide (0.5M solution) in methanol and stirring the resulting mixture for 15 hours at room temperature. The reaction mixture was then neutralized by adding IR-120(H+) ion exchange resin and the resin was removed by filtration. The filtrate was evaporated to dryness and the resulting residue was purified by chromatography on Iatrobeads, eluding with dichloromethane-methanol-water (80:20:2), to provide compound 30 (210 mg, 68% based on compound 28). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydrogencarbonate In ethanol; water | D Synthesis of 8-Methoxycarbonyloctanol Example D Synthesis of 8-Methoxycarbonyloctanol The synthetic scheme employed in this example is illustrated below: STR5 An 8 L jacketed reactor and cooling machine is assembled and the temperature of the cooling, machine is set at -10° C. The reactor is then purged with nitrogen and equipped with a mechanical stirrer. To this reactor is added 1000 g, of methyl hydrogen azelate (4.94 moles, 1 equivalent) and 4 L of DCM. The mixture is stirred while maintaining a nitrogen purge. When the reaction solution reaches about -10° C., 544 mL of borane dimethylsulfide complex (5.44 moles, 1.1 equivalents) is added dropwise to the reaction solution over about 2 hours. The reactor is vented through a moisture trap. Upon complete addition, the temperature of the reaction solution is allowed to rise to about 15° C. and the reaction is stirred at this temperature overnight. The following day, 83 mL of ethanol is added dropwise to the reaction solution over 20 minutes and then 600 mL of water is added dropwise over 60 minutes while venting the reactor in a fume hood. After addition, the mixture is stirred for 30 minutes. The precipitated B(OH)3 is filtered and the solids washed with DCM. The filtrate is slowly added to 10 L of water and then the resulting mixture stirred for at least 15 minutes. The organic layer is drained and washed for a second time with 10 L of water, then with 1*10 L of 6% sodium bicarbonate solution and then with 2*10 L of water. The organic layer is then dried over anhydrous sodium sulfate (1000 g) and stripped to provide for the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With acetic anhydride; sodium hydrogencarbonate In pyridine; methanol; dichloromethane; water | 1 Step (A)--Preparation of 8-Methoxycarbonyloctyl-2-azido-2-deoxy-β-D-glucopyranoside (compound 1a) Step (A)--Preparation of 8-Methoxycarbonyloctyl-2-azido-2-deoxy-β-D-glucopyranoside (compound 1a) 3,4,6-Tri-O-acetyl-2-azido-2-deoxy-α-D-glucopyranosyl bromide (synthesised according to the procedure described by Paulsen, et al.19 and BeMiller, et al.20) (5 g, 12.6 mmol) in dichloromethane (5 mL) was added dropwise over a period of 0.5 hours to a stirred mixture of 8-methoxy-carbonyloctanol (5.0 g), molecular sieves 4A (7.5 g, crushed) and dry silver carbonate (4.5 g) in dichloromethane (5 mL) at -20° C. The mixture was warmed to -10° C. and stirred for 3-4 hours at which time analysis of the mixture by tlc (hexane-ethyl acetate; 60:40) indicated that the reaction was complete. The mixture was then diluted with dichloromethane and filtered on Celite which had been washed twice with water. The solution was then evaporated and the resulting crude product was dissolved in pyridine (30 mL) and acetylated with acetic anhydride (1.5 mL) at 22° C. for 48 hours. Methanol was added to the mixture which was then diluted with dichloromethane, washed with water, a solution of sodium bicarbonate, water and brine. The crude product was chromatographed on silica gel, eluding with hexane-ethyl acetate (75:25), to give 8-methoxycarbonyloctyl-2-azido-2-deoxy-3,4,6-tri-O-acetyl-β-D-glucopyranoside (compound 1") (5.5 g, 87%). The product was crystallized from ethanol. [α]D22 -13.2° (C1.0, chloroform); m.p. 59°-61° C.; 1 H-nmr (CDCl3) δ=5.00(m, 2H, H-3 and H-4), 4.39 (d, 1H, J1,2 7.5 Hz, H-1), 3.45-4.45 ›m incl. OCH3 (s,[3.67)], 2.10, 2.05 (2s, 6H, 2 OAc); Anal. Calc. for C22 H35 O10 N3: C, 52.68; H, 7.03; N, 8.38, Found: C, 52.74; H, 6.90: N, 8.42. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With CaSO4; trimethylsilyl trifluoromethanesulfonate; sodium methylate In methanol; hexane; dichloromethane | A.3 Step 3--Synthesis of 8-Methoxycarbonyloctyl-2-acetamido-2-deoxy-β-D-glucopyranoside Step 3--Synthesis of 8-Methoxycarbonyloctyl-2-acetamido-2-deoxy-β-D-glucopyranoside Trimethylsilyl trifluoromethanesulfonate (2.5 mL, 12.8 mmol) in dichloromethane (5 mL) was added in portions over a period of 30 minutes to a cooled (0° to -5° C.) suspension of 2-acetamido-2-deoxy-1,3,4,6-tetra-O-acetyl-β-D-glucopyranoside (10 g, 25.7 mmol), CaSO4 (20 g pulverized) and 8-methoxycarbonyloctanol (5.8 g, 30.8 mmol) in dichloromethane (50 mL) under nitrogen. Stirring was continued for 15 hours at room temperature by which time tlc showed complete consumption of the starting material and appearance of a new spot at higher Rf (ethyl acetate: hexane: methanol; 6:4:1). The reaction mixture was neutralized with sodium bicarbonate (30 g) and stirred for 0.5 hours. Sodium methoxide in methanol (1M) was added to maintain the pH at 9-9.5. The reaction mixture was stirred for 3 to 5 hours at room temperature, filtered and neutralized with IR-120 (H+) ion exchange resin to maintain pH 7. The resin was removed by filtration and the solvent evaporated. Hexane (100 mL) was added to the residue and the mixture was stirred at 50° C. for 1 hour and then cooled to room temperature. As much hexanes as possible were decanted (the liquid was yellow in color) and the solids were re-evaporated to dryness. The residue was placed under high vacuum for 15 hours to provide 7.5 g of the title compound (yield 75%) as a solid having an Rf 0.40 (ethyl acetate: methanol; 4:1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium iodide; sodium; sodium hydrogencarbonate; toluene-4-sulfonic acid In <i>N</i>-methyl-acetamide; methanol; dichloromethane | A.2 Step 2--Synthesis of 8-Methoxycarbonyloctyl-2-acetamido-4,6-di-benzylidene-2-deoxy-β-D-glucopyranoside The organic layer was dried over anhydrous sodium sulfate and evaporated to a brown solid. Four hundred grams of 2-acetamido-2-deoxy-3,4,6-tri-O-acetyl-β-D-glucopyranosyl chloride was dissolved in 2 L of anhydrous dichloromethane containing 200 g of activated molecular sieves. 8-Methoxycarbonyloctanol (266 g) was charged to the reaction mixture along with 317 g of mercuric cyanide. The solution was stirred rapidly at room temperature for 24 hours. After checking for reaction completion by tlc, the reaction mixture was filtered through a Buchner funnel containing silica and the organic layer was washed twice with water, twice with a 5% solution of potassium iodide and twice with a saturated solution of sodium bicarbonate. The solution was dried over anhydrous sodium sulfate and evaporated to dryness. The residue was taken up in anhydrous methanol and treated with 1 g of freshly cut sodium and then stirred at room temperature overnight. The solution of 8-methoxycarbonyloctyl 2-acetamido-2-deoxy-β-D-glucopyranoside was neutralized with an acid ion exchange resin, filtered and the solvent evaporated to yield 218 g after crystallization from isopropanol/diisopropyl ether. Two hundred grams of 8-methoxycarbonyloctyl 2-acetamido-2-deoxy-β-D-glucopyranoside were dissolved in 1.2 L of anhydrous dimethylformamide and treated with 169 mL of dimethoxytoluene (benzaldehyde dimethyl acetal) and 1 to 2 g of p-toluenesulfonic acid. The reaction was stirred and heated to 40° C. for 5 h, then checked for completion by tlc. When the reaction was complete, the mixture was neutralized with triethylamine and quenched into several volumes of ice water. The product was extracted into dichloromethane and the organic solution backwashed several times with water. The organic solution was dried over anhydrous sodium sulfate, evaporated to dryness and taken up in hot isopropanol. After cooling, 8-methoxycarbonyloctyl-2-acetamido-4,6-O-benzylidene-2-deoxy-β-D-glucopyranoside precipitated. The precipitate was collected by filtration and dried to yield 106 g of product. Partial 1 H-NMR (CDCl3) data: δ=7.41 (m, 5H, aromatic), δ=6.11 (d, 1H, NH), δ=5.5 (s, 1H, CH), δ=4.63 (d, 1H, H-1, J1,2 7.4 Hz), δ=2.29 (t, 2H), δ=1.99 (s, 3H, Ac), δ=1.58 (m, 4H), δ=1.29 (bs, 8H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With acetic anhydride; sodium hydrogencarbonate In pyridine; methanol; hexane; dichloromethane; water; ethyl acetate | VII 8-Methoxycarbonyloctyl 6-O-acetyl-2-azido-2-deoxy-β-D-glucopyranoside (23) 8-Methoxycarbonyloctyl 6-O-acetyl-2-azido-2-deoxy-β-D-glucopyranoside (23) 3,4,6-tri-O-acetyl-2-azido-2-deoxy-α-D-glucopyranosyl bromide (5 g, 0.0126 mmol) in dichloromethane (5 ml) was added dropwise in 0.5 hour into a mixture of 8-methoxycarbonyl octanol (5.0 g), molecular sieves 4A (7.5 g, crushed), dry silver carbonate (4.5 g, 0.053 mmol) in dichloromethane (5 ml) stirred and cooled at -20° C. The mixture was brought to -10° C. and stirred for 3-4 hours at which time TLC developed with hexane:ethyl acetate (60:40) indicated that the reaction was complete. The mixture was then diluted with dichloromethane, filtered on celite washed with water (twice). The crude product obtained after evaporation was dissolved in pyridine (30 ml) and acetylated with acetic anhydride (1.5 ml) at 22° C. for 48 hours. TLC indicated that the unreacted alcohol had been acetylated. Methanol was added to the mixture which was then diluted with dichloromethane washed with water, a solution of sodium bicarbonate, water and brine. The crude product was chromatographed on silica gel using a mixture of hexane and ethyl acetate (75:25) as the eluant which gave a pure product (5.5 g, 90%). The material was crystallized from ethanol: [α]22D -13.2° (c1.0, chloroform); m.p. 59°-61°; 1 H-nmr: 5.00(m, 2H, H-3 and H-4), 4.39 (d, 1H, J1,2 7.5 Hz, H-1), 3.45-4.45[m incl. OCH3 (s, 3.67)], 2.10, 2.05 (2s, 6H, 2 OAc). Anal. Calc. for C22 H35 O10 N3: C, 52.68; H,7.03; N,8.38, Found: C, 52.74; H, 6.90; N, 8.42. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | With acetic anhydride In methanol; palladium on charcoal; dichloromethane; acetic acid; benzene | I 8-Methoxycarbonyloctyl 2-acetamido-2-deoxy-α-D-galactopyranoside (3) EXAMPLE I 8-Methoxycarbonyloctyl 2-acetamido-2-deoxy-α-D-galactopyranoside (3) A solution of 3,4,5-tri-O-acetyl-2-azido-2-deoxy-β-D-galactopyranosyl chloride (1, 14.0 g) in benzene (20 mL) was added to a mixture of 8-methoxycarbonyloctanol (8.46 g), mercuric cyanide (11.77 g), Drierite (42 g) and dry benzenenitromethane 1:1 (v/v) (225 mL). This mixture was stirred at 45° to 50° for 72 h, at which time the solids were removed by filtration through a Celite pad. The filtrate was concentrated to a syrup and dissolved in dichloromethane (200 mL). The resulting solution was washed with water (2*100 mL), dried, filtered, and concentrated to a syrup (17.8 g). Without further purification, this material was dissolved in acetic acid (50 mL) and hydrogenated at 100 psi at room temperature in the presence of 5% palladium on charcoal for 4 h. Acetic anhydride (2 mL) was added and the catalyst was removed by filtration. Reduction of the azido group may also be achieved with hydrogen sulfide in a basic solution or with metallic zinc. The filtrate was diluted with toluene and evaporated to a foam (17 g). Removal of the O-acetyl groups by transesterification using a catalytic amount of sodium methoxide in methanol (30 mL) followed by removal of the sodium ions with an acid resin and evaporation gave a foam (10.1 g). Crystallization from hot water provided pure 8-methoxycarbonyloctyl 2-acetamido-2-deoxy-α-D-galactopyranoside (3, 5.1 g) in an overall 35% yield, m.p. 138°-140°, [α]D25 +130.4° (c, 1.25, methanol); 1 Hnmr (D2 O) δ: 4.95 (d, 1H, J1,2 =3.0 Hz, H-1), 2.12 (s, 3H, NAc); 13 Cnmr (CH3 OD) δ: 98.6 (C-1), 62.7 (C-6), 51.6 (C-2). Anal. calcd. for C18 H33 N1 O8.1/2H2 O: C, 53.98, H, 8.56; N, 3.50; found: C, 53.98; H, 8.31; N, 3.46. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triphenylphosphine In toluene | 17.1 Example 17 (1) Methyl 9-hydroxynonanoate (1.16 g, 6.17 mmol), triphenylphosphine (2.43 g, 9.26 mmol), and carbon tetrabromide (3.07 g, 9.26 mmol) were stirred in toluene (5 ml) under ice cooling for 3 hr. The reaction solution was filtered, followed by concentration to dryness. The residue was purified by column chromatography on silica gel (toluene-ethyl acetate (98: 2)) to give 1.37 g of methyl 9-bromononanoate. 1H-NMR (CDCl3) δ: 1.35-1.40 (6H, m), 1.48-1.50 (2H, m), 1.64-1.70 (2H, m), 1.91 (2H, tt, J = 7.6, 6.8 Hz), 2.37 (2H, t, J = 7.6 Hz), 3.46 (2H, t, J = 6.8 Hz), 3.73 (3H, s) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | In pyridine at 0 - 20℃; for 48h; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With trimethylsilyl trifluoromethanesulfonate In dichloromethane at 0℃; for 3h; | |
72% | With trimethylsilyl trifluoromethanesulfonate In dichloromethane at 0℃; for 3h; | 36 [0304] To prepare 5, a solution of 2,4-di-O-benzoyl-ascarylose-l -(2,2,2- trichloroacetimide) (1, 132 mg, 263 μιηοΐ, Butcher et al., Nat. Chem. Biol. 3:420-22 (2007), which is hereby incorporated by reference in its entirety) and methyl 9- hydroxynonanoate (4, 112.8 mg, 600 μιηοΐ, Kai et al, Tetrahedron 64:6760-69 (2008), which is hereby incorporated by reference in its entirety) in dry DCM (3 ml) at 0°C was treated with trimethylsilyloxy triflate (5 μΐ). After 3 hours, the solution was washed with saturated aqueous NaHC03 solution (0.5 ml), dried over Na2S04, and concentrated in vacuum. Flash column chromatography on silica using a gradient of 20-40% ethyl acetate in hexanes afforded Methyl 9-(3'i?,5'i?-dibenzoyloxy-6'5'-methyl-(2H)-tetrahydropyran-2'- yloxy)nonanoate (5) (99.3 mg, 190 μιηοΐ, 72%) as a colorless oil. 1H NMR (400 MHz, acetone-dg): δ (ppm) 1.28 (d, J= 6.2 Hz, 3H), 1.30 - 1.40 (m, 6H), 1.40 - 1.49 (m, 2H), I .56 - 1.72 (m, 2H), 2.22 (ddd, J= 13.6 Hz, J= 11.5 Hz, J = 3.2 Hz, 1H), 2.30 (t, J= 7.5 Hz, 2H), 2.46 (m, 1H), 3.55 (dt, J= 9.8 Hz, J= 6.5 Hz, 1H), 3.60 (s, 3H), 3.81 (dt, J= 9.6 Hz, J= 6.6 Hz, 1H), 4.13 (dq, J= 9.7 Hz, J= 6.2 Hz, 1H), 4.86 (s.br, 1H), 5.15 (ddd, J = I I .4 Hz, J= 9.8 Hz, J= 4.6 Hz, 1H), 5.18 (m, 1H), 7.50 - 7.60 (m, 4H), 7.63 - 7.71 (m, 2H), 8.04 (m, 2H), 8.11 (m, 2H); 13C NMR (100 MHz, acetone-dg): δ (ppm) 18.3, 25.6, 26.8, 29.7, 29.9, 30.0, 30.2, 30.4, 34.4, 51.4, 67.4, 68.2, 71.4, 71.5, 97.0, 129.4, 129.5, 130.2, 130.3, 130.9, 131.0, 134.1, 134.2, 165.9, 165.9, 174.3. See Figures 17A-B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With potassium carbonate In dichloromethane at 20℃; for 16h; | 18 General procedure for the synthesis of cationic lipids 254a-n General procedure: To a solution of the acid chloride 253 (500 mg, 1 mmol) in dichloromethane (30 mL) the corresponding alcohol (5 equivalent) was added at room temperature followed by solid K2C03 (1 g) and the solution was stirred for 16 h at room temperature. The reaction mixture was diluted with dichloromethane (100 mL) and washed with satd. NaHC03 (100 mL) and the organic layer was dried (Anhyd. Na2S04) and concentrated to obtain the crude product which was purified by Combiflash Rf purification system. Compound 254b: By using the above procedure the lipid 254b was isolated in 72% yield (554 mg). 1H NMR (400 MHz, CDC13) δ 4.91 - 4.78 (m, 1H), 4.05 (t, J = 6.7 Hz, 4H), 3.81 (s, 6H), 3.63 (t, J = 6.4 Hz, 1H), 2.29 (dt, J = 15.2, 7.5 Hz, 8H), 2.21 (s, 6H), 1.84 - 1.69 (m, 2H), 1.57 (dt, J = 13.4, 5.2 Hz, 9H), 1.53 - 1.40 (m, 4H), 1.27 (s, 43H). 13C NMR (101 MHz, cdcl3) δ 174.45, 174.13, 173.59, 77.54, 77.22, 76.91, 74.34, 64.54, 59.17, 51.65, 45.67, 34.56, 34.35, 34.27, 32.67, 29.59, 29.40, 29.33, 29.31, 29.25, 28.83, 26.06, 25.51, 25.18, 25.11, 23.38. MW calcd for C43H79NO10 770.09; Found 770.68. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
400mg | With tin(IV) chloride In dichloromethane at 0℃; for 0.333333h; | 4-D Preparation of 4-D Preparation of 4-DA solution of SnCl4 in DCM (1.0 M, 1.2 mE) was slowly added into a solution of 4-B (230 mg, 1.22 mmol) and 4-C (1.25 g, 1.83 mmol) in DCM (3.5 mE) at 0° C. The resulting mixture was stirred at the temperature for 20 mm, and then water was added to quench the reaction. The product was extracted with DCM, and the crude product was purified by flash column chromatography (EtOAc/hexane: 1/4) to afford 4-D (400 mg, 46%).MS calculated for (C44H5408): 710; MS found (M+Na):733 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | Stage #1: methyl 9-hydroxynonanoate With sodium hydride In N,N-dimethyl-formamide; mineral oil at 0℃; for 2h; Stage #2: methyl iodide In N,N-dimethyl-formamide; mineral oil at 20℃; for 2h; | 3.1 Step 1. -methoxynonanoate (14). To a solution of methyl 9-hydroxynonanoate (3) (1.15 g, 6.1 1 mmol, 1.0 eq) in DMF (Dimethylformamide) (20 mL) was added NaH (60%, 337 mg, 9.17 mmol, 1.5 eq) at 0 °C. After stirring 2h at rt, iodomethane (1.3 g, 9.16 mmol, 1.5 eq) was added into the mixture and stirred at rt for 2 h. The mixture was quenched saturated aqueous solution of NH4CI (20 mL) and extracted with ethyl acetate (3 x 20 mL). The organic layers were dried over Na2SC>4 and concentrated. The residue was purified by column chromatography (PE/EA = 20: 1) to give methyl 9-methoxynonanoate (14) (1.1 g, 89%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
17% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; for 64h; Inert atmosphere; | 1.3 Step 3. Methyl 9-(2,2,2-trifluoroethoxy)nonanoate (4). To a solution of methyl 9-hydroxynonanoate (3) (4.0 g, 21.24 mmol, 1.0 eq) in THF (tetrahydrofuran) (100 mL) were added CF3CH2OH (3.19 g, 31.89 mmol, 1.5 eq), DIAD (Diisopropyl azodicarboxylate) (6.45 g, 31.89 mmol, 1.5 eq) and PPh3 (8.37 g, 31.91 mmol, 1.5 eq). The mixture was stirred at rt (room temperature) for 64 hours (h) under nitrogen atmosphere. Then the mixture was concentrated under reduced pressure and the residue was purified by column chromatography (PE/EA = 20: 1) to give methyl 9-(2,2,2- trifluoroethoxy)nonanoate (4) (1.0 g, 17%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With silver(I) oxide at 20℃; for 72h; Molecular sieve; | 2.1 STEP 1: Preparation of methyl 9-(benzyloxy)nonanoate (Compound 8-b) To compound 8-a (3.77g, 20.1 mmol) were successively added benzyl bromide (4.76 mL, 40.2 mmol), silver oxide (6.98g, 30.1 mmol) and 3Å molecular sieves (6.0 g). The reaction mixture was stirred at room temperature for 3 days before being filtrated through a celite pad. After abundant washing of the celite pad with CH2Cl2, the filtrate was concentrated under rotary evaporation. The crude was purified by silica gel flash chromatography to afford compound 8-b (4.35g, 78% yield)..1H NMR (CDCl3): δ 7.34-7.26 (m, 5H), 4.45 (s, 2H), 3.67 (s, 3H), 3.46 (t, 2H, J = 6.7 Hz), 2.30 (t, 2H, J = 7.6 Hz), 1.64-1.53 (m, 5H), 1.40-1.23 (m, 7H). MS (ESI) 279 (M+1). |
Tags: 34957-73-8 synthesis path| 34957-73-8 SDS| 34957-73-8 COA| 34957-73-8 purity| 34957-73-8 application| 34957-73-8 NMR| 34957-73-8 COA| 34957-73-8 structure
[ 7250-55-7 ]
Dimethyl 3-hydroxypentanedioate
Similarity: 0.84
[ 13380-85-3 ]
Methyl 4-(hydroxymethyl)cyclohexanecarboxylate
Similarity: 0.81
[ 110928-44-4 ]
trans-Methyl 4-(hydroxymethyl)cyclohexanecarboxylate
Similarity: 0.81
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