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CAS No. : | 362-75-4 | MDL No. : | MFCD00005756 |
Formula : | C13H17N5O4 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | LCCLUOXEZAHUNS-WOUKDFQISA-N |
M.W : | 307.31 | Pubchem ID : | 2723654 |
Synonyms : |
2',3'-O-Isopropylideneadenosine
|
Chemical Name : | 2',3'-o-Isopropylideneadenosine |
Num. heavy atoms : | 22 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.62 |
Num. rotatable bonds : | 2 |
Num. H-bond acceptors : | 7.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 74.87 |
TPSA : | 117.54 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -8.81 cm/s |
Log Po/w (iLOGP) : | 2.14 |
Log Po/w (XLOGP3) : | -0.89 |
Log Po/w (WLOGP) : | -0.5 |
Log Po/w (MLOGP) : | -1.47 |
Log Po/w (SILICOS-IT) : | -1.02 |
Consensus Log Po/w : | -0.35 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.36 |
Solubility : | 13.6 mg/ml ; 0.0441 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.1 |
Solubility : | 24.6 mg/ml ; 0.0802 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.24 |
Solubility : | 17.6 mg/ml ; 0.0574 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 4.37 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H332-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With chloro-trimethyl-silane; tert.-butylnitrite In dichloromethane at 20℃; Inert atmosphere | To a solution of 2 (20.0 g, 65.2 mmol) in dry dichloromethane was dropwise added TMCS (57.7 ml, 456.1 mmol) under argon atmosphere at room temperature, after short time. To the solution was dropwis added tert-butyl nitrite (59.6 ml, 547.3 mmol), then stirred at room temperature for overnight. The mixture was quenched with saturated NaHCO3, layers were separated, the water layer was extracted with chloroform (200 ml). The combined organic layers were dried with Na2SO4, filtered and partly evaporated. The residue was purified by column chromatography (CH2Cl2: MeOH=10:1) to give the compound 3 in 60percent yield, white solid (12.3 g). 1H NMR (400 MHz, DMSO-d6) δ 8.88 (s, 1H), 8.83 (s, 1H), 6.30 (d, J = 2.4 Hz, 1H), 5.43 (dd, J = 6.1, 2.4 Hz, 1H), 5.00 (dd, J = 6.1, 2.3 Hz, 1H), 4.38 – 4.29 (m, 1H), 3.58 (dd, J = 4.6, 3.0 Hz, 2H), 1.57 (s, 3H), 1.35 (s, 3H). 13C NMR (100 MHz, DMSO-d6) δ 151.62, 150.95, 149.28, 145.52, 131.06, 113.24, 90.55, 87.13, 83.68, 81.12, 61.12, 26.66, 24.81. |
60% | With chloro-trimethyl-silane; n-Butyl nitrite In dichloromethane for 0.25 h; Inert atmosphere; Darkness | 20 g of 2 ', 3'-isopropylideneuridine (compound of formula II) was dissolved in anhydrous dichloromethane,In the argon protection,In the dark and under normal conditions, 63.4 ml of trimethylchlorosilane was slowly added dropwise,After stirring for 15 min, 59.3 ml of n-butyl nitrite was slowly added dropwise,Stir the reaction after overnight stirring.The organic phase was collected by extraction with chloroform. The organic phase was combined, dried over anhydrous NaSO4, filtered and evaporated to dryness. The residue was separated by silica gel column chromatography (eluent: dichloromethane: methanol = 10: 1v / V) to give 12.7 g of the white product (compound represented by the formula III) in a yield of 60percent. EI: 326. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | In pyridine at -20℃; for 72h; | |
76% | With dmap In dichloromethane at 20℃; for 3h; | 1.1a 1a) 2',3'-O-isopropylidene-5'-O-p-toluenesulfonyladenosine Adenosine (5.0 g, 18.7 mmol, 1.0 eq),TsOH·H2O (32.2 g, 187 mmol, 10.0 eq) was dissolved in 1 L of acetone.Stir at room temperature for 1 h. Saturated NaHCO3 solution was added to the reaction solution under ice bath.Adjust the pH ≥ 7, and remove the acetone by rotary evaporation to obtain a white solid.Namely, 8.6 g of 2',3'-O-isopropylidene adenosine, yield 99%.The above obtained 2',3'-O-isopropylidene adenosine (4.16 g, 10 mmol, 1.0 eq), TsCl (2.48 g, 13 mmol, 1.3 eq) andDMAP (1.83 g, 15 mmol, 1.5 eq) was dissolved in DCM.Stir at room temperature for 3 h.The solvent was evaporated under reduced pressure and the residue was diluted with EA.Wash with saturated NaHCO3 solution and saturated NaCl solution in turn.The organic phase was collected and dried over anhydrous Na 2 SO 4 .Silica gel column chromatography (DCM: MeOH = 50:1)The product was obtained as a white solid, 3.50 g, yield 76%. |
75% | Stage #1: 2',3'-isopropylidene adenosine; p-toluenesulfonyl chloride In pyridine at -20℃; for 96h; In the dark; Stage #2: In pyridine; water at -20℃; for 0.25h; | 1 To a solution of 2',3'-isopropylideneadenosine (2) (4.09, 13 mmol) in anhydrous pyridine (40 ml) was added dropwise a solution of p-toluenesulfonyl chloride (2.97 g, ca. 15.6 mmol, 1.2 mol eq.) in anhydrous pyridine (6 ml) at -20° C. in a nitrogen stream, and the resultant mixture was allowed to stand for 4 days in the dark. For treatment of unreacted reagents, water (4.0 ml) was added to the reaction mixture at -20° C., and the mixture was stirred for 15 minutes. After further addition of water (200 ml), the mixture was extracted twice with 80 ml of ethyl acetate. The organic layer was washed with 50 ml of water, 80 ml of 5% sulfuric acid twice and then 50 ml of saturated aqueous sodium chloride thrice, dried over anhydrous sodium sulfate, and concentrated in vacuo to remove the solvent. The resultant yellow oily residue was applied on a column chromatography (Merck silicagel No. 9385, 230-400 mesh: 50 g) and eluted with ethyl acetate to give a crystalline residue (ca. 6 g), which was washed with diethyl ether to give compound 3 (4.49 g, 9.75 mmol, 75%). 1H NMR (200 mHz, CDCl3+D2O) δ: 1.37 (3H, s), 1.59 (3H, s), 2.40 (3H, s), 4.20-4.36 (2H, m), 4.44-4.53 (1H, m), 5.05 (1H, dd, J=3.4, 6.2 Hz), 5.34 (1H, dd, J=1.8, 6.2 Hz), 6.05 (1H, d, J=18 Hz), 7.19 (2H, d, J=8.4 Hz), 7.63 (2H, d, J=8.4 Hz), 7.84 (1H, s), 8.23 (1H, s). |
70% | In pyridine at -25℃; for 18h; | |
57% | With pyridine | |
With pyridine | ||
With sodium hydrogencarbonate In pyridine; water for 18h; Ambient temperature; | ||
Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In tetrahydrofuran at 20℃; for 0.333333h; Stage #2: p-toluenesulfonyl chloride In tetrahydrofuran for 0.333333h; | 1 5'-Tosyloxy 2',3'-isopropylidene adenosine 5'-Tosyloxy 2',3'-isopropylidene adenosine To a 100 ml flask was added 250 mg of the isopropylidene adenosine. To this sample was added THF (3 ml) followed by NaH (29.2 mg). This was stirred for 20 minutes at room temperature after which p-toluenesulfonyl chloride was added in one lot (232 mg). The mixture was stirred for 20 minutes after which it was deemed complete by LC-MS (Liquid Chromatography-Mass Spectrometry). The organic solvent was removed in vacuo and the crude mixture subjected to purification by silica gel chromatography (ethyl acetate:dichloromethane) to afford 215 mg of the pure product. | |
With pyridine Inert atmosphere; | 1 EXAMPLE 1. SYNTHESIS OF2-AMINO-6-[(2-{4-[5-(6-AMINO-PURIN-9-YL)-3,4-DIHYDROXY- TETRAHYDRO-FURAN-2-YLMETHYLSULFANYL] -PIPERIDIN- 1 - YL} -ETHYLAMINO) -METHYL] -3H- PTERIDIN-4-ONE (13).; [0123] In Scheme 1, above, isopropylideneadenosine 1 is used to synthesize toluenesulfonyl isopropylideneadenosine, 2 (2',3'-0-isopropylidene-5'-0-toluene-p-sulfonyl adenosine). An anhydrous pyridine solution of commercially available 2',3'- isopropylideneadenosine 1 is shaken with p-toluenesulfonyl chloride. In a separate reaction, the synthon 4-acetylsulfanyl-piperidine-l-carboxylic acid tert-butyl ester 4 was synthesized using the method of Plettenburg in which potassium thioacetate and 4-bromo-piperidine 3 are heated in DMF. According to modified procedures based on an existing protocol (Isakovic et al., Bioorg. & Med. Chem. Lett. (2009) 19: 2742-2746), synthon 4 is reacted with sodium methoxide to form the thiol, followed by the reaction with 2 to give 4-[6-(6-Amino-purin-9- yl)-2,2-dimethyl-tetrahydro-furo[3,4-d][l,3]dioxol-4-ylmethylsulfanyl]-piperidine-l- carboxylic acid tert-butyl ester 5. Under the TFA/DCM condition, cleavage of the BOC protection group and subsequent reaction of 6 with (2-bromo-ethyl)-carbamic acid tert-butyl ester provides intermediate 7. The deprotection of 7 yields 8, which contains an amino group used to link 8 to the pterin moiety. | |
With pyridine Inert atmosphere; | ||
With pyridine at -20℃; for 48h; Darkness; | 5'-Azido-5'-deoxy-2',3'-£ sopropylidene-adenosiiie (6a). To a solution of 2',3'-O-isopropylidene-adenosine (10.0 g, 32.5 mmol) in pyridine (100 mL) was added dropwise a solution of j)-toluenesulfonyl chloride (7.44 g, 7.8 mmol) in pyridine (15 mL) at -20°C. After 48 h in the dark, water (10 mL) was added to the reaction mixture at -20°C. After 15 min, additional water (500 mL) was added at room temperature and the reaction mixture was extracted with ethyl acetate (2x200 mL). The organic layers were dried and evaporated to dryness (13.53 g of crude compound). A mixture of crude 5'-0- tosylated adenosine (5.15 g) and sodium azide (2.90 g, 44.6 mmol) in anhydrous DMF (1 10 mL) was heated at 80°C under argon. After 2 h, the reaction was complete and the solvent was removed. The residue was taken up in ethyl acetate and washed with water (twice). The organic layer was dried, evaporated and the crude material was purified by flash chromatography (eluted with 0 to 4% MeOH in CH2C12) to give 6a (1.50 g, 41% in two steps). The NMR spectra are in accordance with published data (Comstock, L. R., Rajski, S. R. Tetrahedron 58, 6019-6026 (2002)). | |
31.1 g | Stage #1: 2',3'-isopropylidene adenosine With pyridine at 0℃; for 0.333333h; Inert atmosphere; Stage #2: p-toluenesulfonyl chloride at 0℃; for 120h; | 14 EXAMPLE 14 EXAMPLE 14 Compound 1 : 2',3'-0-Isopropylideneadenosine (25 g, 82 rnrnol, 1 equivalent) and dry pyridine (200 mL) were placed into a single neck, 500 mL round bottom flask along with a magnetic stir bar then placed under nitrogen atmosphere. The flask was then heated with a heat gun while stirring vigorously. After approximately 5 minutes all solids dissolved. Once in solution, the mixture was cooled in an ice-water bath and stirred for 20 minutes. Tosyl-CI was added as a solid in 8 small portions over I hour to prevent a significant exo therm. The mixture was kept at 0 °C for 5 days. Once the reaction was complete by TLC, the mixture was diluted with 100 mL H20 and 300 mL of ethyl acetate. The mixture was transferred to a separatory funnel and 100 mL of 3N HCI was added. The layers were separated and the organic layer was washed with five 200 mL portions ofwater to remove excess pyridinium hydrochloride. The organic layer was concentrated under reduced pressure then the residue was taken up in 100 mL of dichloromethane. This was slowly added to a stirring solution of heptane (1.12 L) via addition funnel. The off-white precipitate was filtered off to give 31.1 grams of pure product confirmed by mass spec and IH NMR. |
With pyridine; dmap at 20℃; for 14h; | ||
With pyridine | ||
With dmap In dichloromethane at 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With dihydrogen peroxide; methyltrioxorhenium(VII) In ethanol at 25℃; for 18h; | |
85% | With 3-chloro-benzenecarboperoxoic acid In various solvent(s) for 24h; Ambient temperature; | |
With water; dihydrogen peroxide; acetic acid |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With toluene-4-sulfonic acid; orthoformic acid triethyl ester at 20℃; | |
100% | With p-toluenesulfonic acid monohydrate for 3h; Inert atmosphere; | |
99% | With toluene-4-sulfonic acid at 20℃; for 1h; Inert atmosphere; |
99% | With toluene-4-sulfonic acid at 0 - 20℃; Inert atmosphere; | 2’,3’-O-Isopropylideneadenosine (S1) p-Toluenesulfonic acid (19 g, 110.2 mmol) was added to a solution of adenosine (3 g, 11.2 mmol) in acetone (300 mL) at 0 °C. The reaction mixture was stirred at room temperature overnight. While cooling in an ice bath, a saturated sodium bicarbonate solution (300 mL) was added to the reaction mixture until the pH of the solution was slightly basic. Then the acetone was evaporated using rotary evaporator and the remaining aqueous layer was extracted with ethyl acetate. The combined organicl ayers were washed with brine and dried over sodium sulfate. The product was dried under high-powered vaccum to afford compound S1 as a white solid (3.56 g, 99%). |
99% | With perchloric acid for 2h; Cooling; | |
99% | With perchloric acid for 2h; Cooling with ice; | 6.A A. 2′, 3′-O-isopropylidene Adenosine (11) A. 2', 3'-O-isopropylidene Adenosine (11) To adenosine (2.02 g, 7.56 mmol) suspended in acetone (150 ml) was added catalytic amount of perchloric acid (0.91 ml) drop-wise while under ice-bath. The milky white reaction mixture turned clear after 2 hours of stirring. The solution was then neutralized using two equivalent of ammonium hydroxide under ice-bath. The reaction mixture was then evaporated to under rotary evaporator to complete dryness and purified using flash silica gel chromatography (gradient: 0% for 4 min, 0-15% for 4-10 min and eluted at 15% MeOH:dichloromethane). The fractions containing the product were evaporated to obtain the product (2.3 g, 3.58 mmol) in 99% yield. The 1H NMR spectrum was (DMSO-d6): 1.33 (s, 3H), 1.55 (s, 3H), 3.54-3.56 (m, 2H), 4.22 (m, 1H), 4.97 (dd, 1H), 5.23 (t, 1H), 5.35 (d, 1H), 6.12 (d, 1H), 7.34 (s, 2H), 8.17 (s, 1H) and 8.35 (s, 1H). 13C-DMSO-d6: 156.60, 153.09, 149.28, 140.16, 119.57, 113.51, 90.07, 86.82, 83.68, 81.82, 62.05, 27.55 and 25.66 ppm. HRMS (ESI+) calcd for C13H18N5O4 [(M+H)+] 308.1359 found 308.1351. |
99% | With toluene-4-sulfonic acid at 20℃; for 1h; | 1.1a 1a) 2',3'-O-isopropylidene-5'-O-p-toluenesulfonyladenosine Adenosine (5.0 g, 18.7 mmol, 1.0 eq),TsOH·H2O (32.2 g, 187 mmol, 10.0 eq) was dissolved in 1 L of acetone.Stir at room temperature for 1 h. Saturated NaHCO3 solution was added to the reaction solution under ice bath.Adjust the pH ≥ 7, and remove the acetone by rotary evaporation to obtain a white solid.Namely, 8.6 g of 2',3'-O-isopropylidene adenosine, yield 99%.The above obtained 2',3'-O-isopropylidene adenosine (4.16 g, 10 mmol, 1.0 eq), TsCl (2.48 g, 13 mmol, 1.3 eq) andDMAP (1.83 g, 15 mmol, 1.5 eq) was dissolved in DCM.Stir at room temperature for 3 h.The solvent was evaporated under reduced pressure and the residue was diluted with EA.Wash with saturated NaHCO3 solution and saturated NaCl solution in turn.The organic phase was collected and dried over anhydrous Na 2 SO 4 .Silica gel column chromatography (DCM: MeOH = 50:1)The product was obtained as a white solid, 3.50 g, yield 76%. |
95% | With perchloric acid In lithium hydroxide monohydrate at 0 - 20℃; for 7h; | |
95% | With toluene-4-sulfonic acid at 20℃; | |
95% | With toluene-4-sulfonic acid In methanol at 20℃; for 6h; | ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methanol (2) To a solution of adenosine (100.0 g, 374.5 mmol) in methanol and acetone (1:1, 300 ml) was dropwise added the solution of p-toluenesulfonic acid (284.6 g, 1498.1 mmol) in methanol, mixtures were stirred at room temperature for 6 h. The mixture was quenched with saturated NaHCO3 at 0 , the acetone was evaporated, the water layer was extracted with chloroform, the organic layer was washed with deionized water and saturated brine, dried with Na2SO4, filtered and evaporated. To give the compound 2 in 95% yield, white solid (109.2 g). 1H NMR (400 MHz, DMSO-d6) δ 1.38 (s, 3H), 1.65 (s, 3H), 3.80 (d, J = 12.4 Hz, 1H), 3.89 (d, J = 12.8 Hz, 1H), 4.55 (s,1H), 5.11 (d, J = 5.6 Hz, 1H), 5.19 (t, J = 5.2 Hz, 1H), 5.88 (d, J = 4.8 Hz, 1H), 7.89 (s, 1H), 8.33 (s, 1H). 13C NMR (100 MHz, DMSO-d6) δ 25.4, 27.8, 63.5, 81.8, 83.1, 86.2, 94.5, 114.2, 121.2, 140.4, 148.5, 152.6, 156.0. |
95% | With perchloric acid In lithium hydroxide monohydrate at 0 - 20℃; for 2h; Inert atmosphere; | |
95% | With perchloric acid In lithium hydroxide monohydrate at 0 - 20℃; for 2h; | To a solution of adenosine (6.68 g, 25.0 mmol) in 500 mL of acetone was treated with perchloroic add (3.0 mL, 70% in water) at 0 °C then stirred at room temperature for 2 h. The resulting solution was neutralized with Na2CO3 at 0 °C and the resulting white solid removed by filtration. The filtrate was concentrated under reduced pressure to yield acetonide (4.67 g, 95 ). (0129) 1H NMR (400 MHz, DMSO) δ 8.25 (s, 1H), 8.07 (s, 1H), 6.03 (d, J = 3.0 Hz, 1H), 5.25 (dd, J = 6.1, 3.1 Hz, 2H), 5.16 (s, 1H), 4.87 (dd, J = 6.1, 2.4 Hz, 2H), 4.12 (q, J = 4.6 Hz, 2H), 3.45 (qd, J = 11.7, 4.8 Hz, 3H), 1.45 (s, 3H), 1.23 (s, 3H). |
95% | With perchloric acid In lithium hydroxide monohydrate at 0 - 20℃; for 2h; | To a solution of adenosine (6.68 g, 25.0 mmol) in 500 mL of acetone was treated with perchloroic add (3.0 mL, 70% in water) at 0 °C then stirred at room temperature for 2 h. The resulting solution was neutralized with Na2CO3 at 0 °C and the resulting white solid removed by filtration. The filtrate was concentrated under reduced pressure to yield acetonide (4.67 g, 95 ). (0129) 1H NMR (400 MHz, DMSO) δ 8.25 (s, 1H), 8.07 (s, 1H), 6.03 (d, J = 3.0 Hz, 1H), 5.25 (dd, J = 6.1, 3.1 Hz, 2H), 5.16 (s, 1H), 4.87 (dd, J = 6.1, 2.4 Hz, 2H), 4.12 (q, J = 4.6 Hz, 2H), 3.45 (qd, J = 11.7, 4.8 Hz, 3H), 1.45 (s, 3H), 1.23 (s, 3H). |
93% | Stage #1: propan-2-one; adenosine With toluene-4-sulfonic acid at 20℃; for 0.5h; Stage #2: With orthoformic acid triethyl ester for 48h; | A11 Pre aration of intermediate 42 A solution of adenosine (20 g, 74.8 mmol) and p-toluenesulfonic acid monohydrate (14.8 g, 77.9 mmol) in acetone (786 mL) was stirred for 30 min at r.t. and then triethyl orthoformate anhydrous (57 mL, 342.8 mmol) was added. After 2 days volatiles were evaporated and the residue was partitioned in NaHC03 aq. and CH2CI2. The solid was filtered and was washed with water and ether to give 20.2 g of intermediate 42. The filtrate was evaporated and the residue was partitioned in NaHC03 ac and CH2CI2. The separated organic layer was washed with brine, dried over MgSC^ and evaporated. The yellow solid was washed with ether to give another 1.89 g of intermediate 42 In total 22.1 g of intermediate 42 (22.1 g, 69.7 mmol, 93% yield)) is formed and isolated. |
93% | With toluene-4-sulfonic acid at 20℃; for 3h; | |
92% | With perchloric acid for 2h; Inert atmosphere; | 2',3'-Isopropylidene -adenosine (1). Adenosine (0,5 g; 1,9 mmoli) was suspended in 15 mL of acetone under Ar obtaining a white suspension. After the addition of 0.4 mL of HClO4 the solution became clear. After 2 h the solution was treated with NH3 until pH 7 and evaporated. The residue was purified by flash chromatography (eluent: CH2Cl2/MeOH 96/4 v/v) to afford desiderated compound 1 (yield 92%). 1H-NMR (400 MHz, DMSO-d6) d: 1.3 (3H, s, (CH3)2C), 1.5 (3H, s, (CH3)2C), 3.5 (2H, m, H-5, H-5’), 4.2 (1H, m, H-4), 5.0 (1H, dd, H-3), 5.6 (1H, dd, H-2), 6.0 (1H, d, H-1), 8.1 (1H, s, H-8). ESI MS: m/z 310.2 Da [M+H]+, C13H19N5O4 Mol. Wt. 309.32. |
92% | With toluene-4-sulfonic acid; orthoformic acid triethyl ester at 20℃; for 16h; | 1 Synthesis of compound 9a ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4- yl)methanol (1).19 To a solution of adenosine (10.0 g, 37.4 mmol, 1 equiv.) in acetone (1 L), was added CH(OEt)3 (31.1 mL, 187 mmol, 5 equiv.) and pTsOH (35.6 g, 187 mmol, 5 equiv.) . The mixture was stirred at rt for 16 h, then quenched with aqueous saturated NaHCO3, concentrated until a precipitate was obtained. The precipitate was dissolved in MeOH/CH2Cl2, filtered and evaporated to give the final product (10.5 g, 34.4 mmol, 92%) as a white solid. 1H NMR (500 MHz, DMSO-d6) d 8.33 (s, 1H), 8.15 (s, 1H), 7.33 (s, 2H), 6.11 (d, J = 3.1 Hz, 1H), 5.33 (dd, J = 6.2, 3.1 Hz, 1H), 5.29 (d, J = 21.9 Hz, 1H), 4.96 (dd, J = 6.2, 2.5 Hz, 1H), 4.20 (td, J = 4.8, 2.5 Hz, 1H), 3.59 - 3.48 (m, 2H), 1.53 (d, J = 0.7 Hz, 3H), 1.31 (d, J = 0.8 Hz, 3H). 13C NMR (101 MHz, DMSO) d 156.1, 152.5, 148.8, 139.6, 119.0, 113.0, 89.5, 86.3, 83.2, 81.3, 61.5, 27.0, 25.1. Rf : 0.31 (4 % MeOH in CH2Cl2; + 2 % NH37 M in MeOH). HRMS (ESI): calcd. for C13H17N5O4 [M+H ]+: 308.13 found: 308.13 |
92% | With toluene-4-sulfonic acid; orthoformic acid triethyl ester In lithium hydroxide monohydrate at 20℃; | |
91% | With thionyl chloride; orthoformic acid triethyl ester at 20℃; | |
87% | With toluene-4-sulfonic acid | |
86% | With toluene-4-sulfonic acid at 20℃; for 3h; Inert atmosphere; | S.1.1 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydrofuro[3,4-d][1 ,3]dioxol-4-yl)methanol (3) Adenosine (2.0 g, 7.5 mmol) was stirred in acetone (400 mL) with para- toluene sulfonic acid monohydrate (14.3 g, 75 mmol) for three hours at room temperature under nitrogen. Upon completion, the reaction was basified with saturated sodium bicarbonate (400 mL) until the pH was slightly basic via litmus paper detection. The acetone was concentrated and the product was extracted from the aqueous layer using ethyl acetate (5 x 200 mL washes). The organic layer was washed with brine, dried over sodium sulfate and solvent removed in vacuo to yield a white solid (1.91 g, 86%).1H NMR (400 MHz, CD30D) δ 8.31 (s, 1H), 8.18 (s, 1H), 6.16-6.12 (d, J = 2.5 Hz, 1H), 5.29-5.24 (m, 1H), 5.05-5.01 (m, 1H), 4.39-4.34 (br, 1H), 3.81-3.75 (dd, J = 12.2 Hz, 2.5 Hz, 1H), 3.74-3.67 (dd, J = 12.2 Hz, 2.8 Hz, 1H), 1.61 (s, 3H), 1.37 (s, 3H); 13C NMR (100 MHz, CD30D) δ 155.9, 152.2, 148.5, 140.2, 119.1, 113.7, 91.3, 86.5, 83.7, 81.4, 62.0, 26.0, 24.0; LRMS (ESI): m/z [M+Na]+ calc'd for C13H17N5Na04+ 330.12, found 330.13. |
86% | With toluene-4-sulfonic acid at 20℃; for 3h; Inert atmosphere; | ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methanol (4) Adenosine (2.0 g, 7.5 mmol) was stirred in acetone (400 mL) with para-toluene sulfonic acid monohydrate (14.3 g, 75 mmol) for three hours at room temperature under nitrogen. Upon completion, the reaction was basified with saturated sodium bicarbonate (400 mL) until the pH was slightly basic via litmus paper detection. The acetone was concentrated and the product was extracted from the aqueous layer using ethyl acetate (5 x 200 mL washes). The organic layer was washed with brine, dried over sodium sulfate and solvent removedin vacuoto yield a white solid (1.91 g, 86%).1H NMR (400 MHz, CD3OD) δ 1.38 (s, 3H, COC(CH3)2), 1.62 (s, 3H, COC(CH3)2), 3.71 (dd,J= 12.0 and 2.8 Hz, 1H, 5’CH2), 3.79 (dd,J= 12.3 and 2.0 Hz, 1H, 5’CH2), 4.38 (s, 1H, 4’H), 5.04 (d,J= 4.4 Hz, 1H, 3’H), 5.24-5.31 (m, 1H, 2’H), 6.15 (d,J= 2.4 Hz, 1H, 1’H), 8.19 (s, 1H, C2-H), 8.32 (s, 1H, C8-H);13C NMR (100 MHz, CD3OD) δ 25.53, 27.60, 63.57, 82.97, 85.30, 88.10, 92.85, 115.26, 120.69, 141.73, 150.03, 153.77, 157.51; LRMS (ESI): m/z [M+Na]+calc’d for C13H17N5NaO4+330.12, found 330.13. |
85% | With toluene-4-sulfonic acid at 20℃; for 6h; Cooling with ice; | 3.1 Synthesis of 2′,3′-O-isopropylideneadenosine Adenosine (1 mmol of) was dissolved in 10 ~ 30ml (preferably 20 ml) of acetone, p-toluenesulfonic acid 8 ~ 12mmol (preferably 10 mmol) was dissolved in 10 ~ 30ml (preferably 20 ml) of acetone. Under ice cooling, p-toluenesulfonic acid in acetone was slowly added dropwise to a solution of 2-amino-adenosine in acetone, stirred at room temperature 24 ~ 72 h (preferably 6H), poured into ice 4% sodium hydrogencarbonate aqueous solution, a white precipitate, suction filtration, and dried. Soxhlet extraction with chloroform and purified to give a white powder after drying. Yield 85%. |
81% | With perchloric acid at 20℃; for 5h; Inert atmosphere; | |
79% | With toluene-4-sulfonic acid at 20℃; for 50h; | Synthesis of 2',3'-O-isopropylideneadenosine (2) A mixture of adenosine (4.96 g, 18.56 mmol), p-toluenesulfonicacid monohydrate (3.53 g, 18.56 mmol) and acetone (150 mL) wasstirred at room temperature in an open vessel. After 46 h fromstarting reaction, 5.10 g of p-toluenesulfonic acid monohydratewas added. After 2 h, 5.21 g of p-toluenesulfonic acid monohydratewas added (total 13.94 g, 73.3 mmol). After 2 h from adding theacid, the spot of compound 1 disappeared. The mixture turned intoa yellow solution. The reaction mixture was quenched by adding12.3 mL of triethylamine (88.4 mmol, 4.73 eq.). The mixture wasevaporated and purified by column chromatography (chloroform/methanol 20:1) to give compound 2 (4.50 g, 14.6 mmol, 79%). 1HNMR (300 MHz, DMSO-d6) d 1.33 and 1.55 (2s, 6H, CMe2), 3.52-3.56 (m, 2H, H50), 4.19-4.23 (m, 1H, H40), 4.95-4.98 (m, 1H, H30), 5.25 (vbs, 1H, OH), 5.33-5.36 (m, 1H, H 20), 6.11-6.12 (m,1H,H 10), 7.34 (bs, 2H, NH2), 8.15 (s, 1H, H2), 8.34 (s, 1H, H8);ESI-TOF-MS for C13H17N5O4: (MNa+) calcd: 330.12, found: 330.03. |
78% | Stage #1: propan-2-one; adenosine With perchloric acid at 20℃; for 1.5h; Stage #2: With ammonia In lithium hydroxide monohydrate at 20℃; for 3h; | |
78% | With perchloric acid at 0 - 20℃; for 21h; | |
77% | Stage #1: propan-2-one; adenosine at 20 - 30℃; for 0.0833333h; Stage #2: With perchloric acid at 20 - 30℃; for 1h; | 1 Example 1 : Acetonide protection Adenosine 1 (100 g) and acetone (4 L, 40 v/w) were stirred for 5 minutes at 20-30 °C for 5 minutes. Perchloric acid (40 mL, 0.4 v/w) was added to the reaction mixture and stirred at 20-30 °C for 1 h, monitoring by UPLC. The reaction mass was quenched with 7 % sodium bicarbonate solution (1 L, 10 v/w) at 20-30 °C and cooled to -5 °C to 5 °C. The reaction mass was stirred for 1 hour. The obtained product was filtered, the filter cake was washed with acetone (200 mL, 2.0 v/w) and dried under vacuum for 8 h to yield compound 2.Yield: 89 g, 77 %HPLC purity: 97.96 % |
75% | With toluene-4-sulfonic acid at 20℃; for 3h; | |
73% | With toluene-4-sulfonic acid Inert atmosphere; | |
72% | With toluene-4-sulfonic acid; orthoformic acid triethyl ester | I.2 Preparation of adenosine 2',3'-Isopropylidene(Nucleic Acid Chemistry, part 2, Editors Townsend, Tipson, Wiley Interscience, John Wiley & Sons p. 768, (1978))Ethyl orthoformate (12.44 ml, 74.8 mmol) is added dropwise, under argon, to a suspension of adenosine (5 g, 18.7 mmol) in acetone (10 ml) containing APTS (para-toluene-sulfonic acid) (3.9 g, 20.6 mmol). After reaction overnight, 110 ml of water containing 1.86 ml of aqueous ammonia at 27% are added. After stirring for 30 minutes, the reaction mixture is evaporated until white crystals appear. After 12 h at +40° C., a white precipitate is obtained which is recrystallized in water. 4.17 g (13.5 mmol, 72%) of product is obtained in the form of a white powder. This intermediate was characterized by proton NMR. |
70.1% | With Trimethyl orthoacetate; thionyl chloride at 20℃; for 6h; | Synthesis of 2',3'-O-isopropylideneadenosine (14) In a 250 mL, three-neck round-bottom flask were placedadenosine 2 (4.01 g, 15 mmol) and acetone (40 mL). Trimethylorthoacetate (6 mL) was added to the reactionmixture upon stirring and thionyl chloride (SOCl2, 3.3 mL)was added dropwise to the solution for acidification. Afteraddition of thionyl chloride, the mixture was stirred atroom temperature for another 6 h. After reaction completion,the mixture was filtered and the residue was addedinto saturated sodium bicarbonate solution to adjust the pHvalue to 7 or 8. After 30 min of standing, the crude productwas obtained by filtration and was dried at 50 C in avacuum drying oven. Recrystallization from water affordedpure 14 as a light yellow solid (3.23 g, 70.1%) with thepurity of 98.7% (HPLC). 1H NMR (500 MHz, DMSO-d6)d 8.35 (s, 1H, 2-H), 8.16 (s, 1H, 8-H), 7.40 (s, 2H, -NH2),6.13 (d, J = 3.1 Hz, 1H, 10-H), 5.35 (dd, J = 6.2, 3.1 Hz,1H, 20-H), 5.25 (s, 1H, 50-OH), 4.97 (dd, J = 6.2, 2.5 Hz,1H, 30-H), 4.23-4.21 (m, 1H, 40-H), 3.58-3.51 (m, 2H, 50-H), 1.55 (s, 3H, -CH3), 1.33 (s, 3H, -CH3).13C NMR(101 MHz, DMSO) d 156.60 (6-C), 153.10 (2-C), 149.25(4-C), 140.17 (8-C), 119.56 (5-C), 113.49 (quaternarycarbon), 90.09 (10-C), 86.80 (40-C), 83.67 (20-C), 81.82 (30-C), 62.05 (50-C), 27.54 (-CH3), 25.64 (-CH3). |
69% | With perchloric acid; 4 A molecular sieve for 2h; Ambient temperature; | |
unter Zusatz von ZnCl2; | ||
With DL-10-camphorsulphonic acid | ||
Stage #1: propan-2-one; adenosine With methanesulfonyl chloride for 0.5h; Stage #2: With anhydrous sodium carbonate In lithium hydroxide monohydrate for 0.5h; | 1 2',3' isoproylidene adenosine 2',3' isoproylidene adenosine A 250 ml round bottom flask was charged with 10 gm adenosine and to it was added 100 ml acetone. Methanesulfonyl chloride (10 ml) was then added drop-wise to the above solution. The solution was stirred for 30 minutes, after which time 100 ml of 1M Na2CO3 was carefully added. This sample was stirred for another 30 minutes and the solution filtered. The filtrate was taken up in dichloromethane, washed with water, and dried. The organic solvent was removed to afford the 4.45 grams pure 2',3' isopropylidene adenosine as the product. | |
With thionyl chloride; trimethyl orthoformate | ||
Stage #1: propan-2-one; adenosine With toluene-4-sulfonic acid In lithium hydroxide monohydrate Stage #2: With orthoformic acid triethyl ester for 1h; Stage #3: With potassium carbonate | 2 9 (3aR,4R,6R,6aR)-6-(aminomethyl)-2,2-dimethyltetrahydrofuro[3,4-d][l,3]dioxol-4- yl)-9H-purin-6-amineStep 1. Preparation of ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydrofuro[3,4-d][l,3]dioxol-4-yl)methanol(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4- diol (200 g, 748 mmol) was suspended in dried acetone (5 L) containing p-toluenesulfonic acid monohydrate (400 g, 2 mol). Triethyl orthoformate (400 ml, 2.4mol) was then added over a period of 1 h at ambient temperature with vigorous stirring to give a clear solution and then a white solid formed after a while. The mixture was stirred overnight. The mixture was adjusted pH = 8 with saturated aqueous potassium carbonate. The precipitate was filtered off, the filtrate was evaporated and the residue was extracted with EA (1000 ml x 12). The combined organic phase was washed with saturated aqueous potassium carbonate (100 ml x 2) and water (200 ml), dried and concentrated. The crude was triturated (PE : EA = 10 : 1) to afford the target (190 g, yield: 85%) as a white solid. | |
With thionyl chloride; trimethyl orthoformate | It was prepared according to Scheme 1. To a suspension of adenosine (8.03 g, 30 mmol) in 100 mL dry acetone was added trimethyl orthoformate (2.4 mL), followed by SOCl2 (6.75 mL, 90 mmol) dropwise. After stirring overnight, the solid was filtered, dissolved in saturated NaHCO3, and neutralized to pH 7. The solid was collected by filtration, washed with ether (20 mL), and dried in vacuo to give 2′,3′-isopropylidene-N6-methyl-adenosine, to which (3.07 g, 10 mmol) in dry THF (20 mL) were added phthalimide (1.62 g, 11 mmol) and PPh3 (2.88 g, 11 mmol), followed by diisopropyl azodicarboxylate (DIAD, 1.08 g, 11 mmol). After 2.5 h, the white solid was filtered, washed with 20 mL of cold Et2O. The crude Mitsunobu product and hydrazine hydrate (2.4 mL, 50 mmol) were refluxed overnight in ethanol (20 mL). After cooling, the reaction mixture was filtered and the filtrate evaporated to dryness. To the product (612 mg, 2.0 mmol) in THF (5 mL) were added Et3N (0.9 mL, 6.4 mmol) and ethyl bromoacetate (0.28 mL, 2.5 mmol). After stirring overnight, the resulting mixture was filtered and evaporated to dryness. The residue oil thus obtained was dissolved in THF (10 mL) and cooled to -20° C., followed by addition of LiAlH4 (166 mg, 4.4 mmol). The reaction was allowed to warm to room temperature over 2.5 h, quenched with saturated NaHCO3, and the product was extracted with 50 mL of EtOAc, washed successively with saturated NaHCO3, water, and saturated NaCl. | |
With phthalic acid dimethyl ester; toluene-4-sulfonic acid at 20℃; for 24h; Inert atmosphere; | ||
With sulfuric acid at 20℃; for 0.5h; | ||
With toluene-4-sulfonic acid at 20℃; | ||
With toluene-4-sulfonic acid In lithium hydroxide monohydrate at 20℃; for 1h; | ||
unter Zusatz von ZnCl2; | ||
With perchloric acid at 0℃; for 2h; | 26 To a suspension of adenosine in acetone at 0°C was added HC104 and stirring continued for 2h. Aq. NH3 was then added and the solution concentrated in vacuo. The solution was cooled to-20°C and the resulting white precipitate of 2'3'-O- isopropylidene-adenosine collected and washed with acetone | |
With Dess-Martin periodane; toluene-4-sulfonic acid at 20℃; | ||
With perchloric acid | Adenosine 5′-H-Phosphonate Synthesis The synthesis approach for 135 can be seen in Scheme 4 (FIG. 4). First, adenosine was protected using a catalytic amount of perchloric acid in acetone to give 129. This was benzoylated at the 5′ position, as well as on the exocyclic amine, using benzoyl chloride (BzCl) in pyridine to afford 130. Here, it is also possible to form a compound with two Bz protecting groups on the exocyclic amine It was observed that this had started to form before the starting material was fully consumed, so the reaction was stopped. Varying conditions may be altered to optimize this procedure, including by moving forward with an adenosine compound obtaining three Bz protecting groups. Fully protected 130 then underwent acidic hydrolysis using dilute hydrochloric acid in dioxane to give 131. Again, this saw low crude yields. Compound 131 was selectively silylated at the 2′ position using tert-butyldimethylsilyl chloride and silver nitrate (AgNO3) in a mixture of pyridine and tetrahydrofuran. Compound 132 was then protected using dimethoxytrityl chloride in pyridine to give 133 with a crude yield of 88%, which was pushed forward to attempt the selective deprotection using 2N sodium hydroxide (NaOH) in pyridine and methanol which failed. Compound 133 should be purified before going forward to ensure a single, pure product to test the reaction with. As stated before, the scheme could be modified as in the case of guanosine to remove the need to use an isopropylidene protecting group on the 2′ and 3′ hydroxyls, which should reduce the number of steps used and increase the overall yields. | |
With perchloric acid for 2h; Inert atmosphere; | ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methanol13 (S1) Adenosine (1.0 g, 3.7 mmol) was suspended in 50 mL acetone under argon. Dropwise addition of 800 μL of HClO4 gavea clear solution. After 2 h the solution was treated with concentrated NH4OH until the pH was 7. The solvent was evaporated, and the product purified by flash chromatography using CH2Cl2/MeOH (95%). | |
With toluene-4-sulfonic acid; trimethyl orthoformate |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95.1% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; | 58 4.1.1.55. 20,30-O-Isopropylidene-50-deoxy-50-(isoindoline-10’,30’-dione-20’)adenosine (16). Phthalimide (96 mg, 0.65 mmol) and tirphenylphosphine(171 mg, 0.65 mmol) were added into the solutionof 2,3-O-isopropylideneadenosine (0.2 g, 0.65 mmol) inanhydrous THF (20 mL) followed by addition of diisopropyl azodicarboxylate(0.129 mL, 0.65 mmol). The mixture was stirred atroom temperature overnight. The reaction was detected by TLC and terminated by water. It was extracted with dichloromethane(25 mL 3). The organic phase was combined, washed with waterand dried over anhydrous sodium sulphate. After filtration, the solventwas removed in vacuo and the residue was separated on theprep-TLC eluting with 10% methanol/dichloromethane. The productwas obtained as white powder (0.27 g, yield: 95.1%). The puritywas 95% by HPLC analysis. LR-ESI: 437.4 (M+1), 459.4 (M+Na).HRMS (TOF) m/z calcd for C21H21N6O5 [M+H]+437.1573, found437.1577. 1H NMR (CDCl3, 300 MHz) 1.37 (s, 3H), 1.58 (s, 3H),3.72 (dd, J = 14.1 Hz, J = 7.2 Hz, 1H), 4.01 (dd, J = 6.3 Hz,J = 12.0 Hz, 1H), 4.54 (m, 1H), 5.25 (dd, J = 3.3 Hz, J = 6.3 Hz, 1H),5.53 (dd, J = 2.1 Hz, J = 6.3 Hz, 1H), 5.61 (brs, NH2), 6.03 (d,J = 1.8 Hz, 1H), 7.70 (m, 2H), 7.79 (m, 2H), 7.86 (s, 1H), 8.06 (s, 1H). |
91.5% | Stage #1: phthalimide; 2',3'-isopropylidene adenosine With triphenylphosphine In tetrahydrofuran at 20℃; for 0.25h; Stage #2: With diethylazodicarboxylate In tetrahydrofuran at 20℃; for 3h; | 1 Step A2 Synthesis of Intermediate IV At room temperature, add 2.0g (6.5mmol) of Intermediate III, 1.9g (13.0mmol) of phthalimide and 3.4g (13.0mmol) of triphenylphosphine to 20.0mL of tetrahydrofuran (THF), and stir for 15min At low temperature, slowly drop 2.3g (13.0mmol) of diethyl azodicarboxylate (DEAD). After dripping, react at room temperature for 3 hours, filter with suction, and wash with cold ether to obtain 2.6 g of white powdery solid with a yield of 91.5%. |
87% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran Inert atmosphere; |
87% | With di-isopropyl azodicarboxylate; triphenylphosphine | |
85% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran | |
83% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran for 2.25h; | |
73% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 0 - 20℃; for 3h; Inert atmosphere; | 1.2 The second step:2-[[(3aR,4R,6R,6aR)-6-(6-amino-9H- purine-9-yl)-2,2-dimethyl-tetrahydro-2H-furo[3,4-d][1,3]dioxolane-4-yl]methyl]2,3-dihydro-1H- isoindole1,3-oneSynthesis of (I-4): At 0 ° C and nitrogen,To [(3aR,4R,6R,6aR)-6-(6-amino-9H-fluoren-9-yl)-2,2-methyl-tetrahydro-2H-furo[3,4-d][1,3]dioxolane4-yl]methanol (I-2, 50.0 g, 163 mmol),Phthalimide (I-3, 28.7 g, 195 mmol) and triphenylphosphine (46.9 g, 179 mmol)Tetrahydrofuran (500mL)Diethyl azodicarboxylate (DEAD, 31.1 g, 179 mmol) was added dropwise to the solution.The resulting solution was stirred at room temperature for 3 hours.Gradually yellow precipitates,The solid product is collected by filtration,Wash with ether (200 mL).Drying in vacuo gave 52 g (yield: 73%)2-[[(3aR,4R,6R,6aR)-6-(6-Amino-9H-indol-9-yl)-2,2-dimethyl-tetrahydro-2H-furo[3,4 -d][1,3]dioxol-4-yl]methyl]-2,3-dihydro-1H-isoindole-1,3-one (I-4),It is a yellow solid. |
71% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 20℃; | 2 Step 2. Preparation of 2-(((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydrofuro[3,4-d][l,3]dioxol-4-yl)methyl)isoindoIine-l,3-dioneTo a suspension of ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydro furo[3,4-d][l,3]dioxol-4-yl)methanol (40 g, 130 mmol), phthalimide (20 g, 134 mmol) and triphenylphosphine (34 g, 130 mmol) in anhydrous THF (600 ml) was added diethylazodicarboxylate (23 g, 130 mmol) at room temperature. The suspension became an orange solution with generation of heat. After 10 min, a precipitate appeared. After stimng for 2h, the suspension was filtered. The solid was rinsed with ether (100 ml x 2) and dried to afford the target (40 g, yield: 71 ) as a pale solid. |
66% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran for 2h; | |
With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 20℃; for 2.5h; | ||
With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran for 2.5h; | ||
Stage #1: phthalimide; 2',3'-isopropylidene adenosine With triphenylphosphine In tetrahydrofuran at 20℃; for 0.166667h; Inert atmosphere; Stage #2: With di-isopropyl azodicarboxylate In tetrahydrofuran at 20℃; for 2.5h; Inert atmosphere; | ||
With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran for 2.5h; | It was prepared according to Scheme 1. To a suspension of adenosine (8.03 g, 30 mmol) in 100 mL dry acetone was added trimethyl orthoformate (2.4 mL), followed by SOCl2 (6.75 mL, 90 mmol) dropwise. After stirring overnight, the solid was filtered, dissolved in saturated NaHCO3, and neutralized to pH 7. The solid was collected by filtration, washed with ether (20 mL), and dried in vacuo to give 2′,3′-isopropylidene-N6-methyl-adenosine, to which (3.07 g, 10 mmol) in dry THF (20 mL) were added phthalimide (1.62 g, 11 mmol) and PPh3 (2.88 g, 11 mmol), followed by diisopropyl azodicarboxylate (DIAD, 1.08 g, 11 mmol). After 2.5 h, the white solid was filtered, washed with 20 mL of cold Et2O. The crude Mitsunobu product and hydrazine hydrate (2.4 mL, 50 mmol) were refluxed overnight in ethanol (20 mL). After cooling, the reaction mixture was filtered and the filtrate evaporated to dryness. To the product (612 mg, 2.0 mmol) in THF (5 mL) were added Et3N (0.9 mL, 6.4 mmol) and ethyl bromoacetate (0.28 mL, 2.5 mmol). After stirring overnight, the resulting mixture was filtered and evaporated to dryness. The residue oil thus obtained was dissolved in THF (10 mL) and cooled to -20° C., followed by addition of LiAlH4 (166 mg, 4.4 mmol). The reaction was allowed to warm to room temperature over 2.5 h, quenched with saturated NaHCO3, and the product was extracted with 50 mL of EtOAc, washed successively with saturated NaHCO3, water, and saturated NaCl. | |
With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 0 - 20℃; for 8h; | 2.1.2 Preparation of compound 3 Triphenylphosphine (1.5mmol), 2′,3′-O-isopropylideneadenosine (1.0mmol) and phthalimide (1.0mmol) were dissolved in anhydrous THF (20mL) then cooled to 0°C. Diisopropyl azodicarboxylate (DIAD 2.0mmol) was added dropwise, and the obtained mixture was stirred at room temperature for 8h. Evaporation to dryness and flash chromatography (AcOEt/petroleum ether) afforded compound 2. To a stirring solution of 2 (1.0mmol) in EtOH (1.0mL) was added hydrazine hydrate (1.5mmol) then the resulted mixture was warmed to 85°C and stirred for an additional 2h. Filtration and Evaporation to dryness furnished compounds 3, which were used without further purification (Scheme 3). | |
With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 0 - 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 20℃; for 0.5h; Stage #2: benzoyl chloride at 20℃; for 3h; Further stages.; | |
90% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 15 - 40℃; for 0.5h; Stage #2: benzoyl chloride at 20℃; for 3h; | 3.1 3.1. N6-benzoyl-(2’,3’-O-isoroylidene- 5’-deoxy-S’-iodo)-adenosine (15) To a solution of 14 (307 mg, 1.0 mmol) in pyridine (5 mL) was added TMSCI (0.64 mL, 5 mmol).The mixture was stirred at RT for 30 mm and benzoyl chloride(150 pL, 1 .3 mmol) was added. The mixture was stirred at RT for 3 h and the mixture was cooled toO 00 and diluted with water (1 mL). The mixture was stirred for 10mm and aqueous ammonia (2 mL) was added. The mixture was stirred for 30 minutes at RT and the solvents were removed. The residue was purified by silica gel flash chromatography using a linear gradient of DCM I methanol (0 to 10%, MeOH) to give 15 (276 mg; 0.90 mmol; 90%) as a white solid.1H NMR(500MHz; DMSO) ö 11.20 (5, 1H, HNH), 8.78 (5, 1H, Hal), 8.68 (5, 1H,HaS), 8.06 (d, J=7.3Hz, 2H, HBz), 7.65-7.55 (m, 3H, HBz), 6.29 (d, J=2.7Hz, 1 H, Ha6), 5.45 (dd, J=2.7, 6.1Hz, 1H, Ha7), 5.12 (t, J=2.7Hz, HOH), 5.00 (dd, J=2.7, 6.3Hz, 1H, Ha8), 4.28 (ddd, J=2.5, 6.2, 16.8Hz, 1H, Ha9), 3.31 (dd, J=6.0, 13.6 Hz, 2H, HalO), 1.57 (5, 3H, HMe), 1.35 (5, 3H, HMe).l3 NMR (125MHz; DMSO) ö 165.5 (CBz), 155.6 (Ca2), 153.3 (Cal), 149.9(Ca4), 141.5 (Ca5), 134.5 (CBz), 133.8 (CBz), 129.0 (CBz), 127.8 (CBz), 121.5(Ca3), 115.5 (Cisop), 88.5 (Ca6), 87.5 (Ca9), 83.1 (Ca7), 82.1 (Ca8), 63.1(CalO), 27.0 (CMe), 25.4 (CMe).HRMS-ESI(m/z) calculated for C20H22N505 [Mi-H] : 412.1615; Found: 412.1685. |
83% | In pyridine at 0℃; for 1h; |
77% | With pyridine; chloro-trimethyl-silane | |
74% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 20℃; for 2h; Cooling with ice; Inert atmosphere; Stage #2: benzoyl chloride at 20℃; Cooling with ice; Inert atmosphere; | A11 Preparation of intermediate 43 A solution of intermediate 42 (26 g, 84.6 mmol) in pyridine (436 mL) was cooled on an ice bath under nitrogen atmosphere and chlorotrimethylsilane (54.1 mL, 423 mmol) was added over 10 min. The reaction mixture was stirred at room temperature for 2 hours. Then the solution was cooled again on an ice bath and benzoyl chloride (12.8 mL, 110 mmol) was added slowly. The reaction mixture was stirred at room temperature overnight. An extra amount of Benzoyl chloride (7 mL) was added and the mixture was stirred at room temperature overnight. The mixture was cooled to 0°C and diluted with water (100 mL). After 10 min, a NH3-solution in water (50 ml) was added and the mixture was stirred overnight at room temperature. An additional amount of ammonia (10 mL) was added and the reaction mixture was stirred overnight. The solvents were evaporated. The residue was dissolved in CH2CI2 (100 mL), washed in successively with 1M HC1 (2 times 100 mL), saturated NaHC03 (100 mL), H20 ( 100 mL) and brine ( 100 mL), dried over MgSC^ and evaporated yielding a yellow solid. The solid was purified by column chromatography (silica; DCM/MeOH from 100:0 to 0: 100). The desired fractions were collected and concentrated in vacuo to give intermediate 43 (25.91 g, 62.3 mmol 74% yield). |
72% | With pyridine Ambient temperature; | |
58% | With pyridine at 40℃; | |
Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 0 - 20℃; for 1.16667h; Stage #2: benzoyl chloride at 0 - 20℃; for 2.16667h; Stage #3: With tetrabutyl-ammonium chloride; sodium fluoride In methanol; water at 20℃; | 4.a Chlorotrimethylsilane (1.76 g, 16.3 mmol) was added dropwise to a solution of isopropylideneadenosine (1) (4 g, 13 mmol) and 4-(dimethylamino)pyridine (50 mg) in 20 ml of pyridine at 0° C. The mixture was stirred at 0° C. for 10 min and then at ambient temperature for 1 h. Benzoylchloride (1.51 ml, 13 mmol) was added and the mixture was stirred at 0° C. for 10 min. After stirring at ambient temperature for 2 hours, 30 ml of 6/4 MeOH/H2O, 1 g of NaF and tetrabutylammonium chloride (100 mg) were added and then the mixture was left stirring at ambient temperature overnight. The mixture was diluted with 40 ml of ice-cold water and the pH was adjusted to 2.5 with approximately 40 ml of 5N HC1; after extracting with CH2Cl2 (4×50 ml), the organic phases were washed with 2M HCl (20 ml), then with a saturated NaHCO3 solution (30 ml) and then with water, and dried over Na2SO4. After evaporating the solvent, the residue was purified on a silica column, elution being carried out with 3/1 CH2Cl2/acetone. 2 g of the compound (2) were obtained in the form of a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With triethylamine In dichloromethane at 20℃; for 0.5h; Inert atmosphere; | |
90% | In pyridine at 0 - 10℃; for 1.58333h; | |
73% | With pyridine at 25℃; for 20h; |
72% | With triethylamine In dichloromethane at 0 - 20℃; for 1h; | |
70% | With triethylamine In N,N-dimethyl-formamide at 20℃; for 12h; | |
With pyridine at 0℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In 1,4-dioxane at 0℃; for 0.5h; Inert atmosphere; Stage #2: With sulphamoyl chloride In 1,4-dioxane at 0 - 20℃; for 24.5h; Inert atmosphere; | |
85% | Stage #1: 2',3'-isopropylidene adenosine With triethylamine In N,N-dimethyl acetamide at 0℃; for 0.5h; Stage #2: With sulphamoyl chloride In N,N-dimethyl acetamide at 0 - 20℃; for 16h; | |
83% | With sulphamoyl chloride; triethylamine In N,N-dimethyl acetamide at 0 - 20℃; for 16h; |
82% | With sulphamoyl chloride In N,N-dimethyl acetamide; acetonitrile at 20℃; for 1h; | |
76% | With sulphamoyl chloride In ISOPROPYLAMIDE at 20℃; for 0.0833333h; | |
75% | Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In tetrahydrofuran for 0.5h; Inert atmosphere; Cooling with ice; Stage #2: With sulphamoyl chloride In tetrahydrofuran at 20℃; for 2h; Inert atmosphere; Cooling with ice; | |
71% | With sulphamoyl chloride; bis(tri-n-butyltin)oxide In 1,4-dioxane; benzene for 2h; Heating; 5 grad C, 30 min; | |
69% | Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In tetrahydrofuran Stage #2: With sulphamoyl chloride In tetrahydrofuran | |
58% | With 1,8-diazabicyclo[5.4.0]undec-7-ene In dichloromethane for 15h; | |
With sulphamoyl chloride; sodium hydride 1.) DME, 0 deg C, 30 min, 2.) DME, RT, 16 h; Yield given. Multistep reaction; | ||
With sulphamoyl chloride; sodium hydride In 1,2-dimethoxyethane | ||
0.28 g | With sulphamoyl chloride; 1,8-diazabicyclo[5.4.0]undec-7-ene In dichloromethane at 20℃; for 15h; Inert atmosphere; | ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl sulfamate (8) To a solution of 5 (0.5 g, 1.63 mmol, 1 equiv) and DBU (2.1 equiv) in dry DCM (8 mL) under an argon atmosphere, was added a solution of chlorosulfonyl amine 7 (2 equiv) in dry DCM (2 mL) at room temperature over 2 min. The resulting reaction mixture was stirred at room temperature over 15 h. After completion of reaction (indicated by TLC), the solvent was removed under reduced pressure to afford the crude product. The crude product was purified by flash chromatography (Gradient: 5-8% MeOH in EtOAc) to afford the title compound as white foam (0.28 g, 45%). Rf = 0.42 (10% MeOH in EtOAc). 1H NMR (500 MHz, DMSO-d6) δH = 8.57 (s, 1H, HAr), 8.46 (s, 1H, HAr), 7.61 (s, 2H, SO2NH2), 6.29 (d, J = 2.25 Hz, 1H, CHribose), 5.43 (dd, J = 6.2, 2.3 Hz, 1H, CHribose), 5.07 (dd, J = 6.2, 3.05 Hz, 1H, CHribose), 4.49-4.46 (m, 1H, CHribose), 4.21 (d, J = 10.8, 4.95 Hz, 1H, 5-CHH), 4.15 (dd, J = 10.8, 6.1 Hz, 1H, 5-CHH), 1.56 (s, 3H, CH3), 1.34 (s, 3H, CH3), Ar-NH2 protons in exchange, general assignments were confirmed by 1H-1H gCOSY. 13C NMR (125 MHz, DMSO-d6) δC = 148.0 (Cquat), 141.9 (Cquat), 118.9 (Cquat), 113.6 (2 × CHAr), 89.6 (CHribose), 84.0 (CHribose), 83.5 (CHribose), 81.0 (CHribose), 67.9 (5-CH2), 26.9 (CH3), 25.2 (CH3), general assignments were confirmed by 1H-13C HSQC. LRMS (ESI): 387 [M + H]+. |
Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In 1,4-dioxane; mineral oil at 0℃; for 1h; Inert atmosphere; Stage #2: With sulphamoyl chloride In 1,4-dioxane; mineral oil at 20℃; for 24h; Inert atmosphere; | ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl sulfamate14(S3) To a magnetically stirred solution of NaH (84 mg of a 60% suspension in mineral oil, 2.5 mmol) in dioxane, under argonat 0 °C, was added 2’,3’-O-isopropylideneadenosine S1 (500 mg, 1.6 mmol) dissolved in dioxane. After 1 h, S2 (3.2mmol, 370 mg) was added and the mixture was allowed to warm to rt and stirred for 24 h. Methanol (5 mL) was addedand the solvent was evaporated. The crude material was purified by flash chromatography using CH2Cl2/MeOH. (75%) | |
Multi-step reaction with 2 steps 1: benzene / 5 h / 80 °C 2: sulphamoyl chloride / 1,4-dioxane / 0 - 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | With thionyl chloride In N,N,N,N,N,N-hexamethylphosphoric triamide for 5h; Ambient temperature; | |
77% | With thionyl chloride In N,N,N,N,N,N-hexamethylphosphoric triamide | |
67% | With dmap; thionyl chloride In acetonitrile at 0 - 20℃; |
With thionyl chloride | ||
With N,N,N,N,N,N-hexamethylphosphoric triamide; thionyl chloride |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With ruthenium (III) chloride; sodium (meta)periodate In Carbon tetrachloride; water monomer; acetonitrile Ambient temperature; | |
92% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile for 3h; | 2’,3’-O-Isopropylideneadenosine-5’-carboxylic acid 2 BAIB (220 mmol), TEMPO (20 mmol), and a 2,3-O-isopropylideneadenosine(100 mmol) were combined in a reaction vessel, and to this mixture was added 200 mL of a 1:1 acetonitrile-water solution. The reaction mixture was stirred for 3 hours. The resulting precipitate was filtered,triturated sequentially with diethyl ether and acetone, and dried in vacuo.Yield 92%, white solid, mp 250-253C dec. 1H NMR (400 MHz, Me2SO-d6):12.79 (br s, OH), 8.24 (s, H2), 8.08 (s, H8), 7.25 (s, NH2), 6.32 (br s, H1’),5.51-5.53 (m, H2’), 4.45-4.46 (m, H3’), 4.67 (d, H4’, J = 1.7 Hz), 1.52 and1.35 (2s, 2CH3). FABMS (M+H) calculated for C13H15N5O5.H was 322.1146found 322.1152. |
91% | With 2,2,6,6-tetramethyl-1-piperidinyloxy free radical In water monomer; acetonitrile at 20℃; for 4h; |
91% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile for 3h; | |
91% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile for 3h; | a Synthesis of 2',3'-O-isopropylidene-5'-Carboxyadenosine (2) 2',3'-O-isopropylideneadenosine (5.00 g, 16.27 mmol), 2,2,6,6-tetramethyl-1-piperidinyloxy free radical (TEMPO) (510 mg, 3.26 mmol) and (diacetoxyiodo)benzene (DIB) (11.53 g, 35.80 mmol) were placed in a 100 mL round bottom flask equipped with a magnetic stir bar. 30 mL of 1:1 acetonitrile (ACN):water was added and the mixture was stirred for 3 h. After a few initial minutes of stirring, the reaction mixture turns an orange-brown color and compounds begin to dissolve. Shortly after this, a white precipitate of compound 2 formed (). After 3 h the product was filtered, triturated by acetone (3*15 mL) and diethyl ether (3*15 mL) and dried overnight by vacuum. No further purification was necessary. The purity of compound 2 was analyzed by HPLC system 1 and was greater than 98%. The reaction yield was 91%. High-resolution mass spectrometry: expected mass 322.1151 m/z, observed mass: 322.1149 m/z. |
91% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 20℃; for 3h; Inert atmosphere; | |
90% | With 2,2,6,6-tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile for 3h; | |
90% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 23℃; | |
90% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 20℃; for 4h; | |
89% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In acetonitrile at 20℃; for 1h; | 4 Example 4. Solution phase synthesis of 5'-carboxamide adenosine analogs; 2', 3'-O-Isopropylideneadenosine-5'-carboxylic acid.; In a reaction vessel, bis-acetoxyiodobenzene (BAIB, 1.15 g, 3. 58 mmol), 2,2, 6,6- tetramethyl-l-piperidinyloxy (TEMPO, 0.051 g, 0.325 mmol), and 2', 3'- isopropylideneadenosine (0.500 g, 1.63 mmol) were combined, and 3 mL of 1: 1 acetonitrile: water mixture was added to the reaction vessel. The reaction mixture was stirred at ambient temperature under argon for 1 h then filtered. The white crystalline product was washed with acetonitrile: water mixture (1: 1) and dried ira vacuo, to yield 0.464 g of product, 89%.'H NMR (300 MHz, CD3SOCD3) 6 12.77 (br s, 1 H), 8.22 (s, 1 H), 8.06 (s, 1 H), 7.27 (s, 2 H), 6.32 (s, 1 H), 5.52 (dd, JI = 5.7 Hz, J2 = 1.8 Hz, 1 H), 5.45 (d, J= 9. 5 Hz, 1 H), 4.67 (d, J= 1. 5 Hz, 1 H), 1.52 (s, 3 H), 1.35 (s, 3 H). |
89% | With 2,2,6,6-tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 20℃; for 1h; | 4 In a reaction vessel, bis-acetoxyiodobenzene (BAIB, 1.15 g, 3. 58 mmol), 2,2, 6,6- tetramethyl-1-piperidinyloxy (TEMPO, 0.051 g, 0.325 mmol), and 2', 3'- isopropylideneadenosine (0.500 g, 1.63 mmol) were combined, and 3 mL of 1: 1 acetonitrile: water mixture was added to the reaction vessel. The reaction mixture was stirred at ambient temperature under argon for 1 h then filtered. The white crystalline product was washed with acetonitrile: water mixture (1 : 1) and dried in vacuo, to yield 0.464 g of product, 89%.'H NMR (300 MHz, CD3SOCD3) 8 12.77 (br s, 1 H), 8.22 (s, 1 H), 8.06 (s, 1 H), 7.27 (s, 2 H), 6.32 (s, 1 H), 5.52 (dd, J1 = 5.7 Hz, J2 = 1.8 Hz, 1 H), 5.45 (d, J= 9.5 Hz, 1 H), 4.67 (d, J= 1.5 Hz, 1 H), 1.52 (s, 3 H), 1.35 (s, 3 H). |
88.67% | With potassium permanganate In acetic acid at 20℃; for 24h; | 2 Example 2-Synthesis of 2, 3'-O-Isopropylideneadenosine-5'-uronic acid [71] The 2', 3-O-ISOPROPYLIDENEADENOSINE (Example 1,10. 08 g, 0.033 mol) is dissolved in glacial acetic acid (300 ml) at 0 °C and solid KMNO4 (11.89 g, 0.07 mol) is added slowly. After the addition, the solution is stirred at room temperature for 24 hours. It is then treated with 10% hydrogen peroxide until decolorized and the solution is concentrated at reduced pressure. The product precipitates on cooling in ice water. The precipitate (TLC Methylene chloride/ Ethanol 9: 1) is collected by filtration, yielding a white solid (9.4 g, 0.029 mol, 88.67% yield). [72] M. p: 278 °C. 1H-NMR (CDCl3, DMSO-d6) : 8 0.84 (s, 3H) ; 1.02 (s, 3H); 4.11 (s, 1H); 4.91 (m, 1H); 5.00 (m, 1H); 5.75 (s, 1H) ; 6.16 (bs, 2H); 7.56 (s, 1H); 7.59 (s, 1H); 10.03 (bs, 1H). Analyzed for C13HL5N505. |
86% | With potassium hydroxide; potassium permanganate In water monomer for 24h; Ambient temperature; | |
83% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 20℃; for 6h; | S.1.1 (3aS,4S,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydrofuro[3,4-d][1,3]dioxole-4-carboxylic acid (4) Compound 3 (1.0 g, 3.25 mmol) was stirred in acetonitrile: water (1:1, 8 ml_: 8 mL) with (diacetoxyiodo)benzene (DIB) (2.3 g, 7.12 mmol) and 2,2,6,6- Tetramethylpiperidine 1-oxyl (TEMPO) (406 mg, 2.6 mmol) for 6 hours at room temperature until product precipitated out of solution. Product was collected by vacuum filtration and dried to yield a white solid (899 mg, 83%). 1H NMR (400 MHz, CDCI3) δ 12.79 (br, 1H), 8.22 (s, 1H), 8.06 (s, 1H), 6.32-6.29 (br, 1H), 5.54-5.49 (d, J = 5.1 Hz, 1H), 5.47-5.42 (d, J = 5.4 Hz, 1H), 4.68-4.65 (br, 1H), 1.49 (s, 3H), 1.33 (s, 3H); 13C NMR (100 MHz, CDCI3) δ 171.0, 156.3, 152.6, 149.4, 140.7, 119.1, 113.0, 89.8, 85.7, 84.1, 83.7, 26.8, 25.2; LRMS (ESI): m/z [M]- calc'd for C13H17N505- 320.10, found 320.11. |
83% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene; water monomer In acetonitrile at 20℃; for 6h; | |
82% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene; water monomer In acetonitrile at 20℃; for 4h; | |
81% | With ruthenium (III) chloride; potassium hydroxide; potassium peroxodisulfate Ambient temperature; | |
80% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene | |
78% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water monomer; acetonitrile at 25℃; for 3h; | |
77% | With potassium hydroxide; potassium permanganate In water monomer at 20℃; for 72h; | |
67% | With potassium permanganate; acetic acid Ambient temperature; | |
54% | With chromium(VI) oxide; acetic acid for 96h; Ambient temperature; | |
52% | With sodium (meta)periodate; ruthenium(III) trichloride trihydrate In Carbon tetrachloride; water monomer; acetonitrile at 20℃; for 3h; | |
With potassium permanganate | ||
With sodium (meta)periodate; ruthenium(III) trichloride trihydrate In Carbon tetrachloride; water monomer; acetonitrile at 20℃; for 3h; | 1.2 Step 2: 2',3'-O-5'-Carboxy-isopropylidene adenosine 1d 1. Compound 1c (2.4mmol) was dissolved in a ternary solution of water, acetonitrile and carbon tetrachloride (3:2:2, 2.6ml);2. Add sodium periodate (1 g, 4.6 mmol) and ruthenium trichloride trihydrate (0.008 g) to the solution in step 1;3. Stir the mixture of step 2 at room temperature for 3 hours;4. Concentrate the mixture in step 3 in vacuo;5. Purify the remaining crude residue in step 4 with silica gel. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With bromine In aq. acetate buffer at 20℃; for 24h; Darkness; | |
83% | With disodium hydrogenphosphate; bromine In 1,4-dioxane; water for 16h; Darkness; | |
74% | With potassium hydrogenphosphate trihydrate; bromine In 1,4-dioxane; water at 20℃; for 0.5h; Inert atmosphere; |
63% | With disodium hydrogenphosphate; bromine In 1,4-dioxane; water at 25℃; for 14h; | |
With bromine | ||
With N-Bromosuccinimide In acetonitrile for 24h; Ambient temperature; | ||
Multi-step reaction with 2 steps 1: 65 percent / 3M KOH / H2O; methanol / 120 h / 20 °C / (pH=6-7) 2: 80 percent / NaOAc, Br2 / H2O; acetic acid / 3 h |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With diisobutylaluminium hydride In toluene at 0 - 20℃; for 24h; Inert atmosphere; | 3.3.1 9-[(2S,3R,4R)-(5,4-Dihydroxy-2,3-isopropylidenedioxy)pentyl]adenine (19) A 1M solution of 67 DIBAL-H in 51 toluene (82mL, 81.5mmol) was added dropwise to a solution of 2′,3′-O-isopropylideneadenosine 34 18 (5.0g, 16.3mmol) in CPME (80mL) at 0°C. After the reaction was stirred at rt for 24h, 68 aqueous potassium sodium tartrate (20g/100mL) was added at 0°C to quench it. The mixture was stirred at rt for 24h. After the mixture was extracted three timeswith BuOH (150mL), the combined organic layers were concentrated to give a residue, which was purified using silica gel column chromatography (MeOH-CH2Cl2 1:4) to give 37 19 (4.3g, 85%, amorphous). 1H NMR (400MHz, CDCl3): δ 1.26 (s, 3H), 1.48 (s, 3H), 3.60-3.84 (m, 3H), 4.22 (dd, 1H, J=9.2, 6.0Hz), 4.30 (dd, 1H, J=14.0, 10.8Hz), 4.56-4.62 (m, 1H), 4.75 (dd, 1H, J=14.0, 2.4Hz), 8.12 (s, 1H), 8.19 (s, 1H); 13C NMR (100MHz, CDCl3): δ 25.7, 28.4, 45.6, 65.3, 70.9, 76.9, 77.4, 110.6, 119.7, 143.4, 150.7, 153.6, 157.2. |
57% | With diisobutylaluminium hydride In tetrahydrofuran for 24h; Ambient temperature; | |
57% | With diisobutylaluminium hydride In tetrahydrofuran for 24h; Ambient temperature; |
54% | With diisobutylaluminium hydride In tetrahydrofuran for 24h; Ambient temperature; | |
48% | With diisobutylaluminium hydride In tetrahydrofuran; toluene at 20℃; for 24h; | |
With N,N,N,N,N,N-hexamethylphosphoric triamide; diisobutylaluminium hydride 1.) THF, 30 min; other reagent: diisobutylaluminum hydride, 2.) THF, toluene, 25 deg C, 24 h; Yield given. Multistep reaction; | ||
With diisobutylaluminium hydride In tetrahydrofuran |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96.3% | With methanesulfonic acid In N,N-dimethyl-formamide; acetone at 60℃; for 6h; Inert atmosphere; | A.A92.1 Preparation of intermediate 418 To a solution of Adenosine (75 g, 2 1 mmol ) in acetone ( 1 200 mL ) and DMF (400 mL ) was added 2,2-dimethoxypropane (35. 1 g, 336.8 mmol ) and methanesulfonic acid (40.5 g, 42 1 mmol ) under N2. The react ion mixture was stirred at 60 C for 6 h. The reaction mixture was treated with aqueous aHCO ; ( PH to 7-8 ) and then concentrated under reduced pressure. The residue was diluted with H20 ( 1 200 mL ) and extracted with ethyl acetate ( 1 500 ml x 3 ). The organic layers were combined, washed with brine (500 mL ), dried and concentrated under reduced pressure to give intermediate 418 (85 g, 96.3% yield ) as a white solid. |
95% | With Amberlyst 15H+ resin In DMF (N,N-dimethyl-formamide) at 55℃; for 3h; | 1 EXAMPLES; Example 1. Preparation of 5'-aryl ether derivatives:; 5-Amino-2- {2-benzyl-6- [6- (3-phenyl-ureido)-purin-9-yl]-tetrahydro-furo [3,4- d] [1, 3] dioxol-4-ylmethoxy}-benzoic acid:; Adenosine (10 g, 37 mmol was dissolved in N, N-dimethyl formamide (100 mL) and dimethoxypropane (25 mL) followed by addition of Amberlyst 1 SH+ resin. The mixture was stirred 3h at 55°C. The resin was removed by filtration and the solvents removed in vacuo, affording 2', 3'-di-O-isopropylidene adenosine (11 g, 95%). This product (6 g, 20 mmol) was dissolved in N, N-dimethyl formamide (22 mL) and stirred with triisopropylsilyl chloride and imidazole 16 h at 23°C. The solution was partitioned between ether (200 mL) and brine (100 mL) and the ether phase washed with additional brine (2 x 50 mL). The ether was dried over magnesium sulfate and evaporated, affording 5'-O-triisopropylsilyl-2', 3'-di-O-isopropylidene adenosine. This residue was dissolved in toluene (20 mL) and treated with phenylisocyanate (3.6 g, 30 mmol) for 16 h at 25°C. A solution of sodium bicarbonate (1 mL of 10 M) was added and the mixture evaporated to dryness. The residue was partitioned between ethyl acetate (100 mL) and water (25 mL). The organic phase was dried with magnesium sulfate and evaporated to dryness. The solid was dissolved in tetrahydrofuran (20 mL) and stirred with tetrabutyl ammonium fluoride in tetrahydrofuran (20 mL of a 1 M solution) for 1 h in a dry ice/acetone bath. Removal of the solvent in vacuo followed by washing with hexane afforded the 5'-alcohol (5.3 g). A portion of the above phenylurea product (0.41 g, 0.96 mmol) was suspended in 25 mL of 20% aqueous acetic acid and 5 mL of tetrahydrofuran/dioxane (1 : 1) and was stirred at 50°C for 24 h. The white suspension became a clear yellow solution. The mixture was concentrated and then lyophilized, to give 0.360 g (97% yield) of 1- [9- (3, 4- dihydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-9H-purin-6-yl]-3-phenyl-urea as a yellow solid. MW calculated for C17Hl8N605 (MH 387, found 387 by LCMS. A small amount of 4A flame dried molecular sieves (cooled down by a flow of argon) wasadded to a vial containing a portion of the product immediately above (0. 131 g, 0.34 mmol). The mixture was capped with a rubber septum and cooled down to 0 °C. To this mixture trifluoroacetic acid (2. 5mL) was added via syringe and the mixture stirred at this temperature for 15 min. Phenyl acetaldehyde dimethylacetal (0.230 ml, 4 eq. ) was added dropwise and the mixture stirred at 0 °C for 2 h. One more equivalent of phenyl acetaldehyde dimethyl acetal was added and stirred an additional five hours. The volatiles were evaporated off and the residue was purified by flash chromatography (hexane: ethyl acetate, 8 : 2, 1% triethylamine) to give 0.095 g of product (60% yield) as a yellow solid. MW calculated for C2sH24N6Os (MH+) 489, found 489 by LCMS.. A portion of this acetal product (0.068 g, 0.14 mmol) was dissolved in dry N, N- dimethyl formamide (2.5 mL) and potassium tert-butoxide (0.084 g, 5 eq) was added to give a yellow solution. To this mixture was added 2-fluoro-5-nitrobenzoic acid (0.046 g, 1.8 eq). After 2.5 h of stirring at room temperature the mixture was concentrated and purified by preparative HPLC to give the nucleoside analog as a white powder. MW calculated for C32H27N709 (MH+) 654, found 654 by LCMS.. The nitro group of the product immediately above was reduced under a hydrogen atmosphere with a catalytic amount of 10% Pd/C in methanol during 6 h. Filtration through Celite followed by HPLC purification yielded 52 mg (62% yield) of the title compound as clear semisolid. |
95% | With Amberlyst 15H+ resin In N,N-dimethyl-formamide at 55℃; for 3h; | 1 Adenosine (10 g, 37 mmol was dissolved in N, N-dimethyl formamide (100 mL) and dimethoxypropane (25 mL) followed by addition of Amberlyst 15H+ resin. The mixture was stirred 3h at 55°C. The resin was removed by filtration and the solvents removed in vacuo, affording 2', 3'-di-O-isopropylidene adenosine (11 g, 95%). |
90% | With toluene-4-sulfonic acid In acetone at 20℃; for 72h; | Synthesis of [(3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl]methanol (2) To a suspension of adenosine (3 g, 11.23 mmol) and p-toluensulfonic acid (2.33 g, 13.55 mmol) in dry acetone (120 mL), 2,2-dimethoxypropane (5.6 mL, 45.6 mmol) was added. After 3 days of vigorous stirring, the solution was neutralized with a saturated solution of Na2CO3 and then extracted with chloroform (3 x 50 mL). The organic layers were mixed and dried using Na2SO4. The solvent was removed under reduced pressure and the remainder solid was suspended with ether and washed with cold water obtaining a white solid (3.11 g, 10.13 mmol, 90 %); mp 202-203 °C; IR (KBr)νmax: 3,271, 3,109, 2,987, 2,938, 1,686, 1,605, 1,476,1,378, 1,300, 1,208, 1,116; 1H NMR (400 MHz, CDCl3) δ = 1.38 (s, 3H, CH3), 1.65 (s, 3H, CH3), 3.81 (dd, 1H,J = 12.6, 2 Hz, H-5'), 3.98 (dd, 1H, J = 12.6, 1.6 Hz, H-5'),4.55 (br, 1H, H-4'), 5,11 (t, 1H, J = 6.4 Hz, H-3'), 5.21 (t,1H, J = 5.6 Hz, H-2'), 5.90 (d, 1H, J = 4.4 Hz, H-1'), 6.23(s, 2H,NH2), 7.91 (s, 1H, H-8), 8.31 (s, 1H, H-2);FABMS m/z 308 [M]+ (88). |
87.7% | With toluene-4-sulfonic acid In acetone for 48h; | 1 Example 1-Synthesis of 2', 3'-O-Isopropylideneadenosine [69] A solution of p-toluenesulfonic acid (7.79 g, 0.45 mol) in dry acetone (100 ml) is added dropwise to a solution of adenosine (10 g, 0.037 mol) in dry acetone (300 ml). 2,2-Dimethoxypropane (18.18 ml, d=0.847) is then added to the reaction mixture, and the mixture stirred for 48 hours (TLC methylene chloride/ethanol 9: 1). The solution slowly becomes clear and is made basic with 3 % ammonium hydroxide (800 ml). The solvent is removed at reduced pressure, keeping the temperature below 30° C until formation of a solid that is collected by filtration. This procedure is repeated several times by concentrating the filtrate. A white solid is obtained (10.08 g, 0.0328 mol, 87.7% yield). [70] M. p: 228 °C. LH-NMR (CDCL3) : 8 1.38 (s, 3H); 1.65 (s, 3H); 3.79- 4.02 (m, 2H); 4.55 (s, 1H); 5.10-5. 13 (m, 1H); 5.18-5. 24 (m, 1H); 5.84 (s, 2H); 5.87 (s, 1H) ; 6.57-6. 63 (m, 1H) ; 7.84 (s, 1H) ; 8.32 (s, 1H). Analyzed for C13H17N5O4. |
83% | With Bis(p-nitrophenyl) phosphate In acetone | |
80% | With perchloric acid In water monomer; acetone at 0 - 25℃; for 18h; | 2',3'-O-Isopropylideneadenosine 9 2,2-Dimethoxypropane(45.8mL, 374 mmol, 10 eq.) and perchloric acid (70% in water, 3.54 mL, 24.7mmol, 0.67 eq.) were slowly added to a suspension of adenosine (10.0 g, 37.4 mmol, 1.0 eq.) in acetone (200 mL)at 0 °C. The mixture was allowed to slowly warm to rt, and stirred for a further 18 h. The reaction was quenched by addition of aqueous ammonia (30%, 20mL) and concentrated. The residue was taken up into DCM (150 mL) and water (100 mL) was added. The phases were separated and the aqueous phase washed with EtOAc (3 × 100 mL) before the organic phases were combined, dried over Na2SO4, and concentrated to a white powder. The powder was suspended in Et2O (200 mL), and filtered before being washed with further Et2O (3 × 100 mL) to give 9 as a white powder (9.16 g, 80%.). Rf = 0.21 (95:5 DCM:MeOH); mp 218-220 °C (DCM); δH(300.0 MHz, d6-DMSO): 8.34(1 H, s, H-8), 8.15 (1 H, s, H-2), 7.36 (2 H, br s, NH2), 6.12 (1 H, d, J 3.1, H-1), 5.34 (1 H, dd, J 6.2,3.1, H-2), 5.25 (1 H, dd, J 6.0, 5.1, C-5 OH), 4.69 (1 H, dd, J 6.2, 2.5, H-3), 4.23-4.19 (1 H, m, H-4),3.60-3.47 (1 H, m, H-5a, H-5b), 1.54 (3 H, s, C(CH3)2), 1.32 (3 H,s, C(CH3)2); δC(125.8 MHz, CDCl3): 156.2 (C-6),152.7 (C-2), 148.8 (C-4), 139.7 (C-8), 119.1 (C-5), 113.1(C(CH3)2), 89.6(C-1), 86.4 (C-4), 83.2 (C-2), 81.4(C-3), 61.6 (C-5), 27.1 (C(CH3)2),25.2 (C(CH3)2);m/z(ES+) 308 ([M+H]+,100%), 330 ([M+Na]+,29). |
73% | With toluene-4-sulfonic acid In N,N-dimethyl-formamide at 70℃; for 8h; Inert atmosphere; | |
66% | With toluene-4-sulfonic acid In acetone for 2h; | |
53% | Stage #1: 2,2-dimethoxy-propane; adenosine With toluene-4-sulfonic acid In N,N-dimethyl-formamide at 70℃; for 7h; Stage #2: In ethyl acetate at 0 - 20℃; for 5.5h; | 1 To a solution of 9β-D-ribofaranosyladenosine (adenosine) (1) (6.68 g, 25 mmol) in anhydrous dimethylformamide (100 ml) was added 2,2-dimethoxypropane (13 g, 125 mmol, 5 mol eq.) and anhydrous p-toluenesulfonic acid (1.19 g, 6.26 mmol). The reaction mixture was heated to 70° C. for 7 hours with stirring in a nitrogen stream, and then concentrated in vacuo at 40° C. to about 30 ml. The concentrate was poured into 5% aqueous sodium hydrogen carbonate (125 ml), and extracted twice with 150 ml of ethyl acetate. The organic layer was washed twice with 50 ml of water and 50 ml of saturated aqueous sodium chloride, dried over anhydrous sodium sulfate, and concentrated in vacuo to remove the solvent. The resultant yellow oily residue (ca. 8 g) was dissolved in 150 ml of ethyl acetate with heating. The solution was stirred for 5 hours at room temperature and another 30 minutes at 0° C. to result in precipitation of crystals. The crystals were collected by filtration, and washed with ethyl acetate and diethyl ether to give compound 2 (4.1 g, 13.3 mmol, 53%). IR (Nujol, cm-1) 3350 (sh), 3240, 3180, 1685 (s). 1H NMR (200 mHz, CDCl3) δ: 1.38 (3H, s), 1.65 (3H, s), 3.72-3.86 (1H, m), 3.95-4.02 (1H, m), 4.55 (1H, 8), 5.10-5.25 (2H, m), 5.86 (3H, d, J=4.8 Hz), 6.57 (1H, dd, J=1.8, 11.4 Hz), 7.84 (1H, s), 8.32 (1H, s). |
35% | Stage #1: adenosine With toluene-4-sulfonic acid In water monomer; N,N-dimethyl-formamide; acetone for 4h; Stage #2: 2,2-dimethoxy-propane In water monomer; N,N-dimethyl-formamide; acetone for 6h; | 2′,3′-O-Isoprppylideneadenosine (8) Adenosine (20 g, 75 mmol) was dissolved in 800 mL of acetone-DMF (3:1, v/v) and to the mixture was added 14 g of TsOH monohydrate (75 mmol). After 4 h stirring, 19 mL of 2,2-dimethoxypropane (150 mmol) was added and the reaction was allowed to stir for another 6 h. The mixture was partially evaporated and partitioned between EtOAc (200 mL) and sat. Na2CO3 aq. The water layer was washed with CHCl3 and CH2Cl2. Combined organic layer was then washed with brine (100 mL) and dried over anhydrous Na2SO4. After the removal of solvent in vacuo, 2′,3′-Oisoprppylideneadenosine (8) was recovered by trituration with EtOAc-hexane as colorless crystals (8.0 g, 35%). 1H NMR (400 MHz, DMSO-d6) δ 8.32 (1H, s, H, H-2), 8.14 (1H, s, H-8), 7.34 (2H, s, H-6), 6.10 (1H, d, J = 2.8 Hz, H-1′), 5.33 (1H, dd, J = 6.4, 3.2 Hz, H-2′), 4.95 (1H, dd, J = 6.2, 2.5 Hz, H-3′), 4.20 (1H, m, H-4′), 3.52 (2H, m, H-5′), 1.53 (3H, s, Me), 1.31 (3H, s, Me). |
With toluene-4-sulfonic acid In acetone for 1h; Ambient temperature; | ||
With toluene-4-sulfonic acid In N,N-dimethyl-formamide at 70℃; for 8h; Inert atmosphere; | 1.1 Step 1:2',3'-O-Isopropylideneadenosine 1c. 1. Add adenosine (0.9 mmol) to anhydrous DMF (6 ml) with constant stirring;2. Add 2,2-dimethoxypropane (0.6 ml, 4.5 mmol) and toluenesulfonic acid (0.04 g, 0.2 mmol) to the continuously stirring solution of step 2;3. Under a nitrogen atmosphere, stir the reactants of the above step 2 at 70 degrees Celsius, and make them react for 8 hours;4. Concentrate the reactant in step 3 in vacuo;5. Add saturated aqueous sodium bicarbonate solution to the concentrated product of step 4, and stir for 6 hours;6. Extract the organic fraction in step 5 with ethyl acetate;7. All organic parts in step 6 are evaporated under reduced pressure;8. Purify the remaining crude residue in step 7 with silica gel. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; Inert atmosphere; | |
100% | With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; for 16h; Inert atmosphere; | |
100% | With 1H-imidazole In N,N-dimethyl-formamide at 0℃; Inert atmosphere; | 5′-O-tert-Butyldimethylsilyl-2′,3′-O-isopropylideneadenosine (9) Imidazole (5.4 g, 79 mmol) and 7 were dissolved in 50 mL of DMF and tert-butyldimethylchlorosilane (6.0 g, 40 mmol) was added to the solution at 0 °C under argon atmosphere. The reaction was quenched with MeOH in 1 h and was partitioned between EtOAc (300 mL) and sat. Na2CO3 aq. (250 mL). The organic layer was washed with water (150 mL × 3) and brine (100 mL), dried over anhydrous Na2SO4 and evaporated in vacuo. The product 9 was recovered as colorless crystals by filtration, and also from the filtrate after evaporation and trituration with hexane (14 g, quant.). 1H NMR (400 MHz, DMSO-d6) δ 8.39 (lH, s, H-2), 8.05 (1 H, s, H-8), 6.17 (1 H, d, J = 2.8 Hz, H-1′), 5.48 (2 H, br s, H-6), 5.27 (lH, dd, J = 6.4, 2.3 Hz, H-2′), 4.94 (1 H, dd, J = 6.4, 2.3 Hz, H-3′), 4.43 (1 H, dd, J = 6.9, 4.1 Hz, H-4′), 3.88 (1 H, dd, J = 11.4, 4.1 Hz, H-5′a), 3.76 (1 H, dd, J = 11.4, 4.1 Hz, H-5′b), l.64 (3 H, s, Me), 1.41 (3 H, s, Me), 0.84 (9 H, s, t-Bu), 0.02 and 0.01 (6 H, s, Me). |
99% | With 1H-imidazole In N,N-dimethyl-formamide at 20℃; Inert atmosphere; | A.A92.2 Preparation of intermediate 419 To a solution of intermediate 418 (87.8 g, 286mmol) and imidazole (38.9 g, 571 .4 mmol) in DMF (800 mL) was added TBDMSCl (51.67 g, 342.8 mmol ) at room temperature under N2. The react ion was stirred at room temperature for overnight. Water ( 1000 ml ) was added at room temperature, then a white solid was formed and filtered off. The solid was collected and dissolved in ethyl acetate ( 1 500 ml ) and washed with brine (500 ml ). The organic phase was dried over anhydrous Na2S04, filtered and concentrated to give intermediate 419 (120 g, 99% yield ) as a white solid. |
95% | With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; Inert atmosphere; | |
95% | With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; Inert atmosphere; | To a solution 6.A-1 (1.84 g, 6.0 mmol) in 6 mL. of DMF and imidazole (1.02 g, 5 mmol) at 0 °C was added t- butyldimethylsilyl chloride (1.18 g, 7,8 mmol) under atmosphere. The reaction mixture was stirred at room temperature for overnight and quenched with water. Extracted with the aqueous mixture with DCM (50 ml x 3) and dried over MgSO4, Evaporated all the solvent to yield pure product (2.39 g, 95%). (0130) 1H NMR (400 MHz, CDCI3) δ 8.37 (s, 1H), 8.12 (s, 1H), 6.25 (s, 2H), 6.16 (d, J = 2.4 Hz, 1H), 5.21 (dd, J = 6.1, 2.4 Hz, 1H), 4.92 (dd, 7 = 6.1, 2.3 Hz, 1H), 3.88 (dd, J = 11.3, 3.6 Hz, 1H), 3.76 (dd, J = 11.3, 3.9 Hz, 1H), 1.62 (s, 3H), 1.39 (s, 3H), 0.82 (s, 9H), -0.02 (d, J = 0.9 Hz, 6H). |
95% | With 1H-imidazole In N,N-dimethyl-formamide at 0 - 20℃; Inert atmosphere; | To a solution 6.A-1 (1.84 g, 6.0 mmol) in 6 mL. of DMF and imidazole (1.02 g, 5 mmol) at 0 °C was added t- butyldimethylsilyl chloride (1.18 g, 7,8 mmol) under atmosphere. The reaction mixture was stirred at room temperature for overnight and quenched with water. Extracted with the aqueous mixture with DCM (50 ml x 3) and dried over MgSO4, Evaporated all the solvent to yield pure product (2.39 g, 95%). (0130) 1H NMR (400 MHz, CDCI3) δ 8.37 (s, 1H), 8.12 (s, 1H), 6.25 (s, 2H), 6.16 (d, J = 2.4 Hz, 1H), 5.21 (dd, J = 6.1, 2.4 Hz, 1H), 4.92 (dd, 7 = 6.1, 2.3 Hz, 1H), 3.88 (dd, J = 11.3, 3.6 Hz, 1H), 3.76 (dd, J = 11.3, 3.9 Hz, 1H), 1.62 (s, 3H), 1.39 (s, 3H), 0.82 (s, 9H), -0.02 (d, J = 0.9 Hz, 6H). |
94% | With 1H-imidazole In dichloromethane at 0 - 20℃; for 12h; Inert atmosphere; | |
90% | With 1H-imidazole; dmap In N,N-dimethyl-formamide | |
89% | With pyridine at 20℃; for 72h; | |
85% | With 1H-imidazole In tetrahydrofuran; N,N-dimethyl-formamide for 18h; | Preparation of CAS: 139301-93-2 CAS 29834-94-4 (11.3 g, 34.8 mmol) and imidazole (4.74 g, 69.6 mmol) were dissolved in THF:DMF (5:1, v/v, 150 mL). TBDMSCl (7.87 g, 52.2 mmol) was added slowly. After 18 hours, water was added to the reaction mixture and the solvents of the reaction were evaporated in vacuo to yield a white precipitate. The precipitate was collected, washed with water, and dried in a vacuum oven (60 °C) to afford CAS 139301-93-2. The product was used in the next step without further purification.85% yield (12.7 g, 29.5 mmol), white powder.1H NMR (400 MHz, Chloroform-d) d 8.38 (s, 1H), 8.05 (s, 1H), 6.17 (d, J=2.4 Hz, 1H), 5.54 (br s, 2H), 5.28 (dd, J=2.6, 6.2 Hz, 1H), 4.96 (dd, J=2.40, 6.2 Hz, 1H), 4.39-4.46 (m, 1H), 3.85-3.91 (m, 1H), 3.74-3.79 (m, 1H), 1.63 (s, 3H), 1.41 (s, 3H), 0.85 (s, 9H), 0.02 (s, 3H), 0.01 ppm (s, 3H). LC/MS: m/z 422.2 [M+H]+, RT 2.09 min, purity: 98%, method 13 |
82% | With pyridine; dmap at 20℃; for 5h; Inert atmosphere; | 9-((3aS,4S,6S,6aS)-6-(((tert-Butyldimethylsilyl)oxy)methyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-9H-purin-6-amine (S2) tert-Butyldimethylsilyl chloride (588 mg, 3.9 mmol) and N,N-dimethyl-4-aminopyridine (catalytic amount) were added to a solution of 2’,3’-O-isopropylideneadenosine S1 (1 g, 3.25 mmol) in pyridine (15 mL). The reaction mixture was stirred at room temperature for 5 h. Excess tert-butyldimethylsilyl chloride was destroyed with methanol (1 mL) and the mixture was concentrated in vacuo. The residue was diluted with ethyl acetate, washed with saturated sodium bicarbonate and brine. The combined organic layers were dried over sodium sulfate, filtered, and evaporated to dryness. The residue was purified by flash chromatography (1:1 EtOAc/hexane) to afford compound S2 as a white solid (1.13 g, 82%) |
78% | With 1H-imidazole In dichloromethane at 0 - 20℃; for 12h; Inert atmosphere; | 2',3'-O-isopropylidene-5'-O-(tert-butyldimethylsilyl)adenosine (5) To a solution of 2',3'-(O-isopropylidene)adenosine (4, 614 mg, 2.00 mmol) and imidazole (408 mg, 6 mmol) in anhydrous CH2CI2 (12 mL), cooled in an ice bath, was added tert-butyldimethylsilyl chloride (TBDMSC1, 452 mg, 3 mmol) at 0 °C under an atmosphere of N2. The ice bath was removed, and the mixture was stirred for 12 h at room temperature. Methanol (4 mL) was added, and the mixture was stirred for another 15 min, and then concentrated under reduced pressure by rotary evaporation. The solid residue was dissolved in CH2C12, and washed successively with 1 M HC1, deionized water and brine. The organic layer was collected, dried over MgS04, and filtered. The filtrate was concentrated under reduced pressure to give compound 5 (819 mg, 1.57 mmol, 78% yield) as white solids. |
78% | With 1H-imidazole In dichloromethane at 0 - 20℃; for 12h; Inert atmosphere; | 1 2',3'-0-isopropylidene-5'-0-(tri-butyldimethylmethyl) adenosine (5) (2',3'-0-Isopropylidene-5'-0-(tert-butyldimethylsilyl) adenosine (5)) Tert-butyl dimethyl dimethyl chloride (tert- at 0 ° C under nitrogen atmosphere) Butyldimethylsilyl chloride (TBDMSC1, 452 mg, 3 mmol) was added to the ice bath to contain 2',3'-(0-isopropylidene)adenosine (2,3'-(0-isopropylidene)adenosine) (4, 614 mg, 2.00 mmol) and imidazole (408 mg, 6 mmol) in dry CH2C12 (12 mL). The ice bath was removed and the mixture was stirred at room temperature for 12 h. Methanol (4 mL) was added and the mixture was stirred for additional 15 min then concentrated over EtOAc. The solid residue was dissolved in CH2C12 and washed sequentially with 1 MHC1, DI water, and brine. The organic layer was collected, dried over MgS04 and filtered. The filtrate was concentrated under reduced pressure.Compound 5 (819 mg, 1.57 mmol, 78% yield) was obtained as white solid. |
With triethylamine In dichloromethane for 6h; Ambient temperature; | ||
With 1H-imidazole In N,N-dimethyl-formamide | ||
With 1H-imidazole In dichloromethane for 16h; | ||
With 1H-imidazole In dichloromethane at 0℃; for 16h; | 1.b To a solution of 2',3'-O-isopropylideneadenosine (10.0 g, 35.7 mmol, 1.0 equiv) in CH2Cl2 (250 mL) at 0° C. was added imidazole (3.64 g, 53.5 mmol, 1.5 equiv) and tert-butyldimethylsilyl chloride (16.3 g, 105 mmol, 3.5 equiv). After 16 h, the reaction mixture was filtered and the residue washed with acetone (100 mL). The combined filtrates were concentrated to afford 5'-O-tert-butyldimethylsilyl-2',3'-O-isopropylideneadenosine as a white solid that was directly carried onto the next step. An analytically pure sample was obtained by flash chromatography (3:1 hexane/EtOAc). Rf=0.85 (1:6 MeOH/EtOAc); 1H NMR (300 MHz, CDCl3) δ -0.02 (s, 3H), -0.01 (s, 3H), 0.8 (s, 9H), 1.37 (s, 3H), 1.60 (s, 3H), 3.73 (dd, 1H, J=11.4, 4.2 Hz), 3.85 (dd, 1H, J=11.4, 4.2 Hz), 4.36-4.40 (m, 1H), 4.92 (dd, 1H, J=6.0, 2.1 Hz), 5.24 (dd, 1H, J=6.0, 2.1 Hz), 6.14 (d, 1H, J=2.4 Hz), 7.15-7.19 (m, 2H), 8.03 (s, 1H), 8.33 (s, 1H); 13C NMR (150 MHz, CDCl3) δ -5.4 (2C), 19.2, 25.5, 26.3, 27.4, 64.8, 83.0, 85.9, 89.1, 92.4, 115.1, 120.5, 136.3, 141.4, 150.3, 153.9, 157.4; HRMS (ESI+) calcd. for C19H32N5O4Si [M+H]+ 422.2220, found 422.2224 (error 0.9 ppm). | |
With 1H-imidazole In N,N-dimethyl-formamide at 20℃; for 72h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With K 10 clay In methanol; water at 75℃; for 55h; | |
32% | With water at 150℃; for 0.5h; microwave irradiation; | |
Multi-step reaction with 3 steps 1.1: DMAP / CH2Cl2 / 17 h / 20 °C 1.2: CH2Cl2 / 48 h / 45 °C 2.1: 98 percent / TFA / tetrahydrofuran; H2O / 13 h 3.1: 91 percent / KMOPS buffer / tetrahydrofuran / Photolysis |
88 % Chromat. | With erbium(III) triflate In water at 120℃; for 0.5h; Microwave irradiation; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With hydrogen In water; <i>tert</i>-butyl alcohol Ambient temperature; | |
99% | With hydrogen In water; <i>tert</i>-butyl alcohol at 20℃; for 24h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With hydrogen In methanol; water at 20℃; for 14h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With pyridine; N,N-diisopropylamine tetrazolide at 25℃; for 15h; | |
63% | With 1H-tetrazole In dichloromethane at 20℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With di-isopropyl azodicarboxylate; triphenylphosphine Inert atmosphere; | |
99% | Stage #1: 2',3'-isopropylidene adenosine With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 20℃; for 0.166667h; Inert atmosphere; Stage #2: tiolacetic acid In tetrahydrofuran at 0℃; for 1.5h; Inert atmosphere; | 7.1.1 5′-Deoxy-2′,3′-O-isopropylidene-5′-thioacetyl-adenosine (12) [42] To an ice-cold solution of triphenylphosphine (3.76g, 14.32mmol) in dry THF (20mL), diethyl azodicarboxylate (2.2mL, 14.32mmol) was added over 5min. After stirring for 30min, 11 (2.0g, 6.51mmol) was added, and stirring was continued for 10min. To the resulting yellow suspension a solution of thioacetic acid (1.0mL, 14.32mmol) in dry THF (5mL) was added drop wise and stirring was continued for another 1.5h at 0°C. During this time the yellow suspension cleared, and an orange solution was obtained. At the end of the reaction the solvent was removed under reduced pressure, and the resulting yellowish residue was purified by flash chromatography on silica gel. The column was eluted with CHCl3:THF (4:1v/v) followed by gradient of 2-10% methanol in CHCl3. The product containing fractions were evaporated to afford 2.35g (6.43mmol, 99%) of the title compound as a white solid. 1H NMR (300MHz, CDCl3) δ 1.39 (s, 3H, CH3), 1.60 (s, 3H, CH3), 2.34 (s, 3H, COCH3), 3.19 (dd, 1H, J=6.9Hz and 13.5Hz, H-5′a), 3.30 (dd, 1H, J=6.9Hz and 13.5Hz, H-5′b), 4.35 (dt, 1H, J=3.3Hz, H-4′), 4.98 (dd, 1H, J=3.0Hz, H-3′), 5.53 (dd, 1H, J=6.6Hz and 2.1Hz, H-2′), 5.66 (bs, 2H, 6-NH2), 6.06 (d, 1H, J=2.1Hz, H-1′), 7.90 (s, 1H, H-8), 8.37 (s, 1H, H-2); 13C NMR (75MHz, CDCl3) δ 24.5 (CH3), 26.2 (CH3), 29.7 (COCH3), 30.4 (C-5′), 82.9 (C-3′), 83.4 (C-2′), 85.3 (C-4′), 90.1 (C-1′), 113.7 (C(CH3)3), 139.2 (C-8), 152.4 (C-2), 154.7 (C-6), 193.7 (CO), C-4 and C-5 not detected; HRMS for C15H20N5O4S ([M+H]+) calcd: 366.1230 found 366.1227. |
98% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 0℃; for 1h; |
96% | Stage #1: 2',3'-isopropylidene adenosine With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 0℃; for 0.166667h; Inert atmosphere; Stage #2: tiolacetic acid In tetrahydrofuran at 0℃; for 1h; Inert atmosphere; | |
94% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran | |
90% | Stage #1: 2',3'-isopropylidene adenosine With triphenylphosphine; diethylazodicarboxylate at 0℃; for 0.75h; Stage #2: tiolacetic acid In tetrahydrofuran at 0℃; for 1h; | 7; 1 Diethyl azodicarboxyl-ate (3.4 mL, 21.73 mmol) was added drop-wise over 5 min to an ice-cold solution of triphenylphosphine (5.7 g, 21.73 mmol). The solution was stirred for 30 min at 0° C. prior to the addition of 2',3'-O-isopropylideneadenosine (1; 3.0 g, 9.76 mmol) and stirring was then continued for a further 10 min to produce a yellow suspension. To the suspension a solution of thioacetic acid (1.6 mL, 21.73 mmol) in absol tetrahydrofuran (5 mL) was added drop-wise and stirring was then continued for a further 1 h at 0° C. During this time the yellow suspension became a darker yellow solution. After stirring for 1 h the solvent was removed under reduced pressure and the resulting yellowish residue was purified by flash chromatography on silica gel [350 g, CHCl3/THF (4:1 v/v) and then CHCl3/CH3OH (9:1 v/v)]. The fractions containing the product were combined and the solvent removed under reduced pressure. The residue was dried in vacuo (0.5 mbar) to furnish pure protected thionucleoside 2 (3.2 g, 90%) as a white foam; TLC Rf (CH2Cl2/CH3OH, 9:1 v/v)=0.6, mp=56-57° C.; 1H-NMR (CDCl3): δ 1.39 (s, 6H, CH3), 2.34 (s, 3H, COCH3), 3.18 and 3.29 (AB part of ABX spectrum, J5'a-H,4'-H=J5'b-H, 4'-H=6.5 Hz, Jgem=13.5 Hz, 2H, 5'a-H, 5'b-H), 4.34 (dt, J4'-H, 3'-H=3 Hz, J4'a-H, 5a'-H=J4'-H, 5'b-H=7 Hz, 1H, 4'-H), 4.97 (dd, J3'-H, 4'-H=3 Hz, J3'-H, 2'-H=6.5 Hz, 1H, 3'-H), 5.51 (dd, J2'-H, 1'-H=2 Hz, J2'-H, 3'-H=6.5 Hz, 1H, 2'-H), 6.07 (d, J1'-H, 2'-H=Hz, 1H, 1'-H), 5.9 (s, br., 2H, NH2), 7.90 (s, 1H, 8-H) and 8.36 (s, 1H, 2-H); 13C-NMR (CDCl3): δ 25.56 (q, CH3), 27.33 (q, CH3), 30.79 (q, COCH3), 31.60 (t, C-5'), 84.24 (d, C-3'), 84.43 (d, C-2'), 86.47 (d, C-4'), 91.07 (d, C-1'), 114.75 (s, C(CH3)2), 120.53 (s, C-5), 140.09 (d, C-8), 149.42 (s, C-4), 153.45 (d, C-2), 155.92 (s, C-6) and 194.79 (s, CO); ESMS; m/z: 366.0 [M+H+]; [α]D (CDCl3)=-13.2. |
85% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran | |
78% | Stage #1: 2',3'-isopropylidene adenosine With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 0℃; for 0.166667h; Stage #2: tiolacetic acid In tetrahydrofuran at 0℃; for 1h; | |
77% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at -10 - 0℃; | |
73% | Stage #1: 2',3'-isopropylidene adenosine With triphenylphosphine; diethylazodicarboxylate In dichloromethane for 0.166667h; Cooling with ice; Stage #2: tiolacetic acid In dichloromethane at 0℃; for 1h; Further stages; | |
65% | With triphenylphosphine In tetrahydrofuran at 0℃; for 1.16667h; | 1) 3.76 g of triphenylphosphine (cas: 603-35-0) was added to 50 ml of dry THF and stirred until it was completely dissolved.Under an ice bath, 2.2 ml of diethyl azodicarboxylate (cas: 1972-28-7) was slowly added dropwise over 5 min.After stirring for 30 min, 2.1 g of 2 ', 3'-isopropylideneadenosine (cas: 362-75-4) was added.Maintain 0 degrees stirring 10min.Slowly add 5 ml of thioacetic acid (cas: 507-09-5) 1.0ml.After 1 hour of reaction at 0 ° C, the solvent was spin-dried,The resulting yellow solid was separated by column chromatography (CHCl2-MeOH, 100: 0, 95: 5, 90:10).Compound 1 was obtained1.62 g, 65% yield. |
With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 0 - 20℃; | ||
4.8g | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 0℃; for 2h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
79% | With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione In dimethyl sulfoxide | |
70% | With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione In dimethyl sulfoxide at 20℃; for 72h; | |
70% | With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione In dimethyl sulfoxide at 20℃; for 72h; Inert atmosphere; |
63% | With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione In dimethyl sulfoxide for 73h; Inert atmosphere; Darkness; | |
Stage #1: 2',3'-isopropylidene adenosine With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione Stage #2: ethyl (triphenylphosphoranylidene)acetate In dimethyl sulfoxide |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | Stage #1: 2',3'-isopropylidene adenosine With chloro-trimethyl-silane In pyridine at 20℃; for 0.5h; Stage #2: 4,4'-dimethoxytrityl chloride In pyridine at 20℃; for 1h; Stage #3: With ammonium hydroxide In pyridine at 20℃; for 0.5h; Further stages.; | |
62% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane for 1h; Stage #2: 4,4'-dimethoxytrityl chloride for 1.5h; | 4.2.1. N6-(4,4'-Dimethoxytrityl) -2',3'-isopropylidene-adenosine (2) To a solution of 1 (1.10 g, 3.57 mmol) in pyridine (32 mL) was added trimethylchlorosilane (TMSCl) (0.762 mL, 5.35 mmol). After 1 h, 4,4-dimethoxytrityl chloride (1.68 g, 5.03 mmol) was added and the reaction mixture was stirred for 1.5 h. After this time, 8 mL of NH3 were added and the solution stirred for others 45 min. Then the reaction was evaporated to dryness and the residue obtained was dissolved in CH2Cl2 and washed with NaHCO3 at 5%. The organic phase was dried, filtered and evaporated to give a crude residue purified by chromatography over silica gel (eluent: CH2Cl2/MeOH, 98:2→95:5, v/v) to afford desiderated compound 2 (yield 62%). 1H NMR (400 MHz, DMSO-d6) δ: 1.30, 1.52 (6H, s, (CH3)2C), 3.45-3.50 (2H, m, H-5'), 3.72 (6H, s, 2OCH3), 4.20 (1H, m, H-4'), 4.98 (1H, dd, H-3'), 5.12 (1H, t, J = 2.8 Hz, OH-5'), 5.38 (1H, dd, J = 4.0 Hz, H-2'), 6.10 (1H, d, J = 2.8 Hz, H-1'), 6.83-7.30 (15H, m, Ph), 7.94 (1H, s, H-2), 8.42 (1H, s, H-8). ESI MS: m/z 612.8 Da [M + H]+, C34H37N5O6 Mol. Wt. 611.69. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 4h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane at 110℃; for 4h; Inert atmosphere; | |
100% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 16h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane at 110℃; for 4h; Inert atmosphere; | |
100% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane for 3h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5; N,N,N-tributyl-1-butanaminium iodide In 1,4-dioxane Inert atmosphere; |
100% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 16h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane for 4h; Inert atmosphere; Reflux; | |
95% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 2h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane for 1h; Reflux; Inert atmosphere; | |
91% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 0 - 20℃; for 16h; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane at 110℃; for 6h; | 1 9-((3aR,4R,6R,6aR)-6-(azidomethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-9H- purin-6-amine (2) To a solution of ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2- dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methanol (6.50 g, 21.2 mmol, 1 equiv.) in dioxane (70 mL) at 0 °C were added DPPA (9.12 mL, 42.3 mmol, 2 equiv.) and DBU (9.50 mL, 63.5 mmol, 3 equiv.). The mixture was stirred at rt for 16 h. NaN3 (6.88 g, 106 mmol, 5 equiv.) and 15-crown-5 (4.66 g, 21.2 mmol, 1 equiv.) were added and the mixture was stirred at 110 °C for 6 h. The organic phase was evaporated, water was added and the aqueous phase was extracted three times with EtOAc. The combined organics were washed with brine, dried over Na2SO4 and evaporated. The residue was purified on silica gel column eluting with 30-100% AcOEt in PE to afford the desired product (6.43 g, 19.3 mmol, 91%) as a light yellow solid. 1H NMR (400 MHz, CDCl3) d 8.35 (s, 1H), 7.91 (s, 1H), 6.11 (d, J = 2.4 Hz, 1H), 6.06 - 5.91 (m, 2H), 5.46 (ddd, J = 6.4, 2.3, 0.4 Hz, 1H), 5.06 (ddd, J = 6.4, 3.5, 0.5 Hz, 1H), 4.45 - 4.31 (m, 1H), 3.66 - 3.45 (m, 2H), 1.61 (d, J = 0.7 Hz, 3H), 1.39 (d, J = 0.7 Hz, 3H). 13C NMR (101 MHz, CDCl3) d 155.8, 153.2, 149.3, 140.0, 120.4, 114.8, 90.8, 85.7, 84.1, 82.2, 52.4, 27.2, 25.4. Rf : 0.41 (95:5 CH2Cl2/MeOH). HRMS (ESI): m/z [M +H]+ calcd. for C13H17N8O3 : 333.13 found: 333.13 |
90% | Stage #1: 2',3'-isopropylidene adenosine With diphenylphosphoranyl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 2h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane at 20 - 90℃; for 17h; Inert atmosphere; | |
88% | Stage #1: 2',3'-isopropylidene adenosine With diphenylphosphoranyl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 3h; Stage #2: With Caswell No. 744A; benzo-15-crown-5; N,N,N-tributyl-1-butanaminium iodide In 1,4-dioxane for 4h; Reflux; | |
86% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 47h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 at 110℃; for 4h; Inert atmosphere; Microwave irradiation; | 2.1 Synthesis procedures 4.2.1 2',3'-O-Isopropylidene-5'-azido-5'-deoxyadenosine (2) To a solution of 2',3'-O-isopropylideneadenosine (1.00 g, 3.25 mmol) in dry 1,4-dioxane (10 mL), DPPA (1.40 g, 1.48 mL, 6.5 mmol) and DBU (1.34 g, 1.50 mL, 9.8 mmol) were added dropwise. The reaction mixture was stirred at rt for 47 h. Sodium azide (1.06 g, 16.3 mmol) and 15-crown-5 (0.527 g, 0.064 mL, 0.326 mmol) were added to the reaction mixture. The resulting mixture was irradiated in a microwave reactor at 110 °C for 4 h (1 bar, 600 rpm) and cooled to rt. Filtration of the reaction mixture and evaporation of the filtrate gave a residue that was redissolved in CHCl3 (90 mL). The organic phase was washed with water (3 * 15 mL) and brine (3 * 15 mL). The organic phase was dried with anhydrous Na2SO4, filtrated and evaporated to give a brown oil. |
86% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 Inert atmosphere; Reflux; | |
85% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 16h; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane for 48h; Heating / reflux; | 13.a To a suspension of 2',3'-O-isopropylideneadenosine (307 mg, 1.0 mmol, 1.0 equiv) in 1,4-dioxane (20 mL) at room temperature were added DBU (305 mg, 2.0 mmol, 2.0 equiv) and diphenylphosphoryl azide (DPPA) (826 mg, 3.0 mmol, 1.5 equiv). The reaction was stirred 16 hours at room temperature then NaN3 (650 mg, 10 mmol, 10 equiv) and 15-crown-5 (22 mg, 0.1 mmol, 0.1 equiv) were added and the reaction was heated at reflux. After 48 hours the reaction was cooled to room temperature and concentrated in vacuo. Purification by flash chromatography (EtOAc) afforded the title compound (276 mg, 85%) as white solid: Rf 0.50 (EtOAc); 1H NMR (600 MHz, CDCl3) δ 1.38 (s, 3H), 1.61 (s, 3H), 3.57 (dd, J=3.6, 1.8 Hz, 2H), 4.38 (ddd, J=3.6, 3.0, 1.8 Hz, 1H), 5.03 (dd, J=6.6, 3.6 Hz, 1H), 5.42 (dd, J=6.6, 2.4 Hz, 1H), 6.01 (d, J=1.8 Hz, 1H), 6.07 (br s, 2H), 7.94 (s, 1H), 8.35 (s, 1H); 13C NMR (150 MHz, CDCl3) δ 25.5, 27.3, 52.5, 82.1, 84.2, 85.8, 90.9, 115.0, 120.4, 140.4, 149.3, 152.2, 155.2; MS (APCI+) calcd for C13H17O3N8 [M+H]+ 333.1, found 333.2. |
80% | Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 2h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 for 1h; Reflux; | synthesis of 5'-deoxy-5'-azido-2',3'-O-isopropylideneadenosine(3) compound 2 (1.0 g, 3.25 mmol, 1.0 eq.), dppa (1.4 mL,6.51 mmol, 2.0 eq) and DBU (1.47 mL, 9.77 mmol, 3.0 eq.) were dissolvedin 1,4-dioxane 10 mL under nitrogen atmosphere. The mixturewas stirred at room temperature for 2 h followed by additionof sodium azide (1.0 g, 16.3 mmol, 5.0 eq.) and 15-crown 5-ether(6.5 mL, 33 mmol, 0.01 eq.). The mixture was refluxed for 1 h and filtered.The filtrate was evaporated and purified by column chromatography(chloroform/methanol 29:1) to give the compound 3(0.87 g, 2.6 mmol, 80%). 1H NMR (300 MHz, CDCl3): d 1.39 and 1.62 (2 s, 6H, CMe2), 3.52-3.64 (m, 2H, H50), 4.36-4.41 (m, 1H, H40),5.06 (dd, 1H, J = 3.3, 6.3 Hz, H30), 5.46 (dd, 1H, J = 2.5, 6.5 Hz, 2H0),5.89 (br, 2H, NH2), 6.11 (d, 1H, J = 2.5 Hz, H10), 7.93 (s, 1H, H8), 8.36(s, 1H, H2). ESI-TOF-MS for C13H16N8O3: (MNa+) calcd: 355.12,found: 355.08. |
73.1% | With diphenylphosphoranyl azide; triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 20℃; for 36h; | |
57% | With Caswell No. 744A; diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 20h; Inert atmosphere; | |
Multi-step reaction with 2 steps 1: DBU / dioxane / 20 °C 2: NaN3; 15-crown-5 / dioxane / 110 °C | ||
Multi-step reaction with 2 steps 1: 100 percent / DBU / dioxane / 3 h / 20 °C 2: 90 percent / NaN3; Bu4NI; 15-crown-5 / dioxane / 5 h / Heating | ||
Multi-step reaction with 2 steps 1: NaHCO3 / H2O; pyridine / 18 h / Ambient temperature 2: NaN3 / dimethylformamide / 0.67 h / 65 - 68 °C | ||
Multi-step reaction with 5 steps 1: pyridine / 2 h / 0 °C 2: Ambient temperature 3: 88 percent / NH3/EtOH / 1.5 h 4: 84 percent / NaN3 / dimethylformamide / 45 h / 80 °C 5: 66 percent / NH3, MeOH / 40 h / Ambient temperature | ||
Multi-step reaction with 2 steps 1: pyridine / 48 h / -20 °C / Darkness 2: Caswell No. 744A / N,N-dimethyl-formamide / 2 h / 80 °C / Inert atmosphere | ||
Multi-step reaction with 2 steps 1: thionyl chloride / N,N,N,N,N,N-hexamethylphosphoric triamide 2: Caswell No. 744A / N,N-dimethyl-formamide | ||
Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 4h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5; N,N,N-tributyl-1-butanaminium iodide In 1,4-dioxane for 5h; Inert atmosphere; Reflux; | ||
Stage #1: 2',3'-isopropylidene adenosine With diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene In 1,4-dioxane at 20℃; for 2h; Inert atmosphere; Stage #2: With Caswell No. 744A; benzo-15-crown-5 In 1,4-dioxane for 1.5h; Inert atmosphere; Reflux; | C12.i Step i. Synthesis of Compound i1. To a suspension of 2’,3’-O-isopropylideneadenosine (2.0 g, 6.5 mmol, 1 eq.) in 1,4-dioxane (4 mL) was added DPPA (2.8 mL, 13 mmol, 2eq.) and DBU (2.92 mL, 19.54 mmol, 3eq.) at room temperature under N2. The solution was stirred for 2 hours after which NaN3 (2.12 g, 32.6 mmol, 5 eq.) and 15-crown-5 (128 μL, 0.65 mmol, 0.1 eq.) were added and the reaction mixture was heated to reflux. After 1.5 hours the solid was removed by filtration. The solvent was evaporated and the crude product was purified by column chromatography (Ethyl acetate/Hexanes=1:1, to dichloromethane: methanol =50:1, silica). After dried under vacuum, a light yellow solid (i1) was obtained. 1H NMR (600 MHz, Chloroform-d) δ 8.35 (s, 1H), 7.92 (s, 1H), 6.11 (d, J = 2.4 Hz, 1H), 5.85 (s, 2H), 5.46 (dd, J = 6.3, 2.4 Hz, 1H), 5.06 (dd, J = 6.4, 3.4 Hz, 1H), 4.38 (td, J = 5.7, 3.3 Hz, 1H), 3.64 - 3.50 (m, 3H), 1.62 (s, 3H), 1.39 (s, 3H). HRMS (ESI+) calcd for C13H17N8O3 [M+H]+ m/z 333.1418, found m/z 333.1419. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran | |
89% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran at 0 - 20℃; for 17h; | |
89% | With triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran; toluene at 0 - 20℃; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | With 1-(mesitylene-2-sulfonyl)-3-nitro-1H-1,2,4-triazole; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 12h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With 1-(mesitylene-2-sulfonyl)-3-nitro-1H-1,2,4-triazole; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 12h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With 1-(mesitylene-2-sulfonyl)-3-nitro-1H-1,2,4-triazole; N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; for 12h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71 mg | Multistep reaction; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | Stage #1: biotin With 1,1'-carbonyldiimidazole In N,N-dimethyl-formamide at 40℃; for 1h; Stage #2: 2',3'-isopropylidene adenosine With sodium amide In N,N-dimethyl-formamide at 40℃; for 24h; | 1 Synthesis of 2',3'-isopropylidene-5'-biotinoyladenosine (Compound C) 150 ml of dimethylformamide, 5 g of biotin and then 4 g of carbonyidiimidazole (recorded as CDI) were introduced into a three-necked flask under nitrogen. The mixture was heated at 40° C. for 1 hour, then 6.3 g of commercial isopropylideneadenosine were added and then 5 g of sodium amide were added. The solution was heated at 40° C. for 24 hours. The dimethylformamide (recorded as DMF) was distilled off without exceeding 40° C. and 200 ml of dichloromethane were added to the residue. The organic phase was washed 3 times with 150 ml of water, dried with sodium sulphate and evaporated under vacuum to dryness. The residue was purified on a silica column, eluent dichloromethane then dichloromethane 95/methanol 5, to result in a solid product which was taken up in dichloromethane and precipitated with diethyl ether. The precipitate obtained was filtered off, washed with ether and dried under vacuum. Yield=50% Analyses: NMR DMSO 1H 13C 2D: Spectra in accordance |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With phthalimide; di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; for 14h; | 1.3 step3 the15378(005mmol) of 2’,3'-isopropylidene-adenosine, 19.67g(0.075mol)PPh3 and 11.03g (0 075mol) of Phthalimide addedinti 170ml of Anhydrous THF, after dissolving added drop wise 19 8mL(0 .1mol) Diisopropylazodicarboxylate , after completionof drop wise addition , at room temperature keep the reaction for 14h,completion of the reaction, concentrated , it was dissolved using 150mL ethanol containing 5%-10% of anhydrous hydrazine, refluxed for30min, Cooled to room temperature, filtered, the filter residue was rinsed withethanol, the filtrate was concentrated, then Silica gel (200-300 mesh) columnchromatography purification, volume of eluent is: Petroleum ether: Ac0Et = 1:4, to obtain 15.47g of White solid 5'-aminomethyl-2’,3'-isopropylidene-adenosine, Yield: 76%, |
Multi-step reaction with 3 steps 1: 100 percent / DBU / dioxane / 3 h / 20 °C 2: 90 percent / NaN3; Bu4NI; 15-crown-5 / dioxane / 5 h / Heating 3: 84 percent / Ph3P / pyridine; aq. NH3 / 20 °C | ||
Multi-step reaction with 2 steps 1: 85 percent / PPh3, DEAD / tetrahydrofuran 2: 93 percent / N2H4*H2O / ethanol |
Multi-step reaction with 2 steps 1: 66 percent / PPh3, diethyl azodicarboxylate / tetrahydrofuran / 2 h 2: 96 percent / hydrazine hydrate / ethanol / 2 h / Heating | ||
Multi-step reaction with 3 steps 1: NaHCO3 / H2O; pyridine / 18 h / Ambient temperature 2: NaN3 / dimethylformamide / 0.67 h / 65 - 68 °C 3: conc. NH4OH, PPh3 / pyridine / 18 h / Ambient temperature | ||
Multi-step reaction with 6 steps 1: pyridine / 2 h / 0 °C 2: Ambient temperature 3: 88 percent / NH3/EtOH / 1.5 h 4: 84 percent / NaN3 / dimethylformamide / 45 h / 80 °C 5: 66 percent / NH3, MeOH / 40 h / Ambient temperature 6: 70 percent / H2 / Pd-C / ethanol / 5 h / 2327.2 Torr | ||
Multi-step reaction with 2 steps 1: di-isopropyl azodicarboxylate; triphenylphosphine / tetrahydrofuran / 2.5 h 2: hydrazine hydrate monohydrate / ethanol / Reflux | ||
Multi-step reaction with 2 steps 1: triphenylphosphine; diethylazodicarboxylate / tetrahydrofuran / 20 °C 2: hydrazine hydrate monohydrate / ethanol / 3 h / 20 °C / Reflux | ||
Multi-step reaction with 2 steps 1: triphenylphosphine; di-isopropyl azodicarboxylate / tetrahydrofuran / Inert atmosphere 2: hydrazine hydrate monohydrate / ethanol / Reflux | ||
Multi-step reaction with 2 steps 1.1: diphenylphosphoranyl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 3 h / 20 °C 1.2: 4 h / Reflux 2.1: palladium 10% on activated carbon; hydrogen / ethanol / 16 h / 20 °C | ||
Multi-step reaction with 2 steps 1: triphenylphosphine; di-isopropyl azodicarboxylate / tetrahydrofuran / 2.5 h 2: hydrazine hydrate monohydrate / ethanol / Reflux | ||
Multi-step reaction with 3 steps 1: thionyl chloride / N,N,N,N,N,N-hexamethylphosphoric triamide 2: Caswell No. 744A / N,N-dimethyl-formamide 3: palladium 10% on activated carbon; hydrogen / methanol | ||
Multi-step reaction with 2 steps 1.1: diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 2 h / 20 °C / Inert atmosphere 1.2: 1 h / Reflux; Inert atmosphere 2.1: palladium on activated charcoal; hydrogen / ethanol | ||
Multi-step reaction with 2 steps 1.1: 1,8-diazabicyclo[5.4.0]undec-7-ene; diphenyl phosphoryl azide / 1,4-dioxane / 16 h / 20 °C / Inert atmosphere 1.2: 4 h / Inert atmosphere; Reflux 2.1: hydrogen; palladium on activated charcoal / methanol / 2.5 h / 20 °C | ||
Multi-step reaction with 2 steps 1: Caswell No. 744A; diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 20 h / 20 °C / Inert atmosphere 2: palladium 10% on activated carbon; hydrogen / ethanol / 12 h / 760.05 Torr | ||
Multi-step reaction with 2 steps 1: triphenylphosphine; di-isopropyl azodicarboxylate / tetrahydrofuran / 8 h / 0 - 20 °C 2: hydrazine monohydrate / ethanol / 2 h / 85 °C | ||
Multi-step reaction with 2 steps 1.1: diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 2 h / 20 °C / Inert atmosphere 1.2: 1 h / Reflux 2.1: hydrogen; palladium 10% on activated carbon / methanol / 4 h / 20 °C | ||
Multi-step reaction with 2 steps 1: di-isopropyl azodicarboxylate; triphenylphosphine 2: hydrazine / ethanol | ||
Multi-step reaction with 2 steps 1: triphenylphosphine; di-isopropyl azodicarboxylate / tetrahydrofuran / 20 °C 2: hydrazine hydrate monohydrate / ethanol / Reflux | ||
Multi-step reaction with 2 steps 1.1: diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 47 h / 20 °C / Inert atmosphere 1.2: 4 h / 110 °C / 750.08 Torr / Inert atmosphere; Microwave irradiation 2.1: polymer-bound triphenylphosphine / tetrahydrofuran / 4 h / 20 °C / Inert atmosphere 2.2: 20 °C / Inert atmosphere | ||
Stage #1: 2',3'-isopropylidene adenosine With phthalimide; triphenylphosphine; diethylazodicarboxylate In tetrahydrofuran for 10h; Stage #2: With hydrazine In ethanol at 20℃; for 2h; Heating / reflux; | 26 To a solution of 2'3'-O-isopropylidene-adenosine (leq) and triphenyl phosphine (leq) and phthalimide (1. 03eq) in THF under argon was added diethyl azodicarboxylate (leq) and the mixture was stirred for l Oh. The resulting precipitate was collected and washed with diethyl ether. To a solution of this solid (leq) in EtOH was added hydrazine (15eq) and the solution was refluxed for 2h and then cooled to rt. The resulting precipitate was filtered, dissolved in water and adjusted to pH 4. The precipitate was filtered and the filtrate was adjusted to pH 10, extracted into chloroform and dried over MgS04 to afford 2'3'-O-isopropylidene-5'-amino- adenosine. | |
Multi-step reaction with 2 steps 1: triphenylphosphine; diethylazodicarboxylate / tetrahydrofuran / 3 h / 0 - 20 °C / Inert atmosphere 2: hydrazine hydrate monohydrate / ethanol / 2 h / Reflux | ||
Multi-step reaction with 2 steps 1: di-isopropyl azodicarboxylate; triphenylphosphine / tetrahydrofuran / 0 - 20 °C 2: hydrazine hydrate monohydrate / ethanol / 2 h / 80 °C | ||
Multi-step reaction with 2 steps 1.1: diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 2 h / 20 °C / Inert atmosphere 1.2: 1.5 h / Inert atmosphere; Reflux 2.1: hydrogen; palladium on activated charcoal / methanol / 4 h | ||
Multi-step reaction with 2 steps 1.1: diphenylphosphoranyl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 2 h / 20 °C / Inert atmosphere 1.2: 17 h / 20 - 90 °C / Inert atmosphere 2.1: palladium 10% on activated carbon; hydrogen / ethyl acetate / 3 h / 20 °C | ||
Multi-step reaction with 2 steps 1.1: triphenylphosphine / tetrahydrofuran / 0.25 h / 20 °C 1.2: 3 h / 20 °C 2.1: hydrazine hydrate monohydrate; ethanol / 2 h / 80 °C | ||
Multi-step reaction with 2 steps 1.1: diphenyl phosphoryl azide; 1,8-diazabicyclo[5.4.0]undec-7-ene / 1,4-dioxane / 20 °C / Inert atmosphere 1.2: Inert atmosphere; Reflux 2.1: hydrogen; palladium 10% on activated carbon / methanol / 20 °C / 760.05 Torr |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With pyridine at 100℃; for 48h; | I.2 Preparation of the triazolo intermediate (Samano, Miles, Robins, J. Am. Chem. Soc., 1994, 116, 9331-9332)The adenosine isopropylidene (1 g, 3.2 mmol) and the amidine described above (1.4 g, 6.5 mmol) are stirred into pyridine (15 ml) at 100° C. under argon for 48 h. The pyridine is then evaporated off and coevaporated with toluene. The oil obtained is then taken up with ethyl acetate and this organic phase is washed with water saturated with NaCl. After drying over Na2SO4 and evaporation, the triazolo nucleoside is obtained in the form of a white powder with a yield of 60% (700 mg, 1.9 mmol). It was then characterized by proton NMR. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85.2% | With toluene-4-sulfonic acid In acetone at 20℃; for 5h; | 1 Step A1 Synthesis of Intermediate III At room temperature, 10.0 g (0.037 mol) of purine (II) and 19.9 g (0.105 mol) of p-toluenesulfonic acid monohydrate were added to 200.0 mL of acetone, and 17.7 g (0.120 mol) of triethyl orthoformate was slowly added dropwise. After dripping, react at room temperature for 5 hours. Saturated potassium carbonate solution was added to adjust pH=9, acetone was evaporated, water was added and stirred, and 9.8 g of white solid was obtained by suction filtration, with a yield of 85.2%. |
With toluene-4-sulfonic acid In acetone |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1H-imidazole In DMF (N,N-dimethyl-formamide) at 23℃; for 16h; | 1 EXAMPLES; Example 1. Preparation of 5'-aryl ether derivatives:; 5-Amino-2- {2-benzyl-6- [6- (3-phenyl-ureido)-purin-9-yl]-tetrahydro-furo [3,4- d] [1, 3] dioxol-4-ylmethoxy}-benzoic acid:; Adenosine (10 g, 37 mmol was dissolved in N, N-dimethyl formamide (100 mL) and dimethoxypropane (25 mL) followed by addition of Amberlyst 1 SH+ resin. The mixture was stirred 3h at 55°C. The resin was removed by filtration and the solvents removed in vacuo, affording 2', 3'-di-O-isopropylidene adenosine (11 g, 95%). This product (6 g, 20 mmol) was dissolved in N, N-dimethyl formamide (22 mL) and stirred with triisopropylsilyl chloride and imidazole 16 h at 23°C. The solution was partitioned between ether (200 mL) and brine (100 mL) and the ether phase washed with additional brine (2 x 50 mL). The ether was dried over magnesium sulfate and evaporated, affording 5'-O-triisopropylsilyl-2', 3'-di-O-isopropylidene adenosine. This residue was dissolved in toluene (20 mL) and treated with phenylisocyanate (3.6 g, 30 mmol) for 16 h at 25°C. A solution of sodium bicarbonate (1 mL of 10 M) was added and the mixture evaporated to dryness. The residue was partitioned between ethyl acetate (100 mL) and water (25 mL). The organic phase was dried with magnesium sulfate and evaporated to dryness. The solid was dissolved in tetrahydrofuran (20 mL) and stirred with tetrabutyl ammonium fluoride in tetrahydrofuran (20 mL of a 1 M solution) for 1 h in a dry ice/acetone bath. Removal of the solvent in vacuo followed by washing with hexane afforded the 5'-alcohol (5.3 g). A portion of the above phenylurea product (0.41 g, 0.96 mmol) was suspended in 25 mL of 20% aqueous acetic acid and 5 mL of tetrahydrofuran/dioxane (1 : 1) and was stirred at 50°C for 24 h. The white suspension became a clear yellow solution. The mixture was concentrated and then lyophilized, to give 0.360 g (97% yield) of 1- [9- (3, 4- dihydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-9H-purin-6-yl]-3-phenyl-urea as a yellow solid. MW calculated for C17Hl8N605 (MH 387, found 387 by LCMS. A small amount of 4A flame dried molecular sieves (cooled down by a flow of argon) wasadded to a vial containing a portion of the product immediately above (0. 131 g, 0.34 mmol). The mixture was capped with a rubber septum and cooled down to 0 °C. To this mixture trifluoroacetic acid (2. 5mL) was added via syringe and the mixture stirred at this temperature for 15 min. Phenyl acetaldehyde dimethylacetal (0.230 ml, 4 eq. ) was added dropwise and the mixture stirred at 0 °C for 2 h. One more equivalent of phenyl acetaldehyde dimethyl acetal was added and stirred an additional five hours. The volatiles were evaporated off and the residue was purified by flash chromatography (hexane: ethyl acetate, 8 : 2, 1% triethylamine) to give 0.095 g of product (60% yield) as a yellow solid. MW calculated for C2sH24N6Os (MH+) 489, found 489 by LCMS.. A portion of this acetal product (0.068 g, 0.14 mmol) was dissolved in dry N, N- dimethyl formamide (2.5 mL) and potassium tert-butoxide (0.084 g, 5 eq) was added to give a yellow solution. To this mixture was added 2-fluoro-5-nitrobenzoic acid (0.046 g, 1.8 eq). After 2.5 h of stirring at room temperature the mixture was concentrated and purified by preparative HPLC to give the nucleoside analog as a white powder. MW calculated for C32H27N709 (MH+) 654, found 654 by LCMS.. The nitro group of the product immediately above was reduced under a hydrogen atmosphere with a catalytic amount of 10% Pd/C in methanol during 6 h. Filtration through Celite followed by HPLC purification yielded 52 mg (62% yield) of the title compound as clear semisolid. | |
With 1H-imidazole In N,N-dimethyl-formamide at 23℃; for 16h; | 1 This product (6 g, 20 mmol) was dissolved in N, N-dimethyl formamide (22 mL) and stirred with triisopropylsilyl chloride and imidazole 16 h at 23°C. The solution was partitioned between ether (200 mL) and brine (100 mL) and the ether phase washed with additional brine (2 x 50 mL). The ether was dried over magnesium sulfate and evaporated, affording 5'-O-triisopropylsilyl-2', 3'-di-O-isopropylidene adenosine. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With 2,2,6,6-Tetramethyl-1-piperidinyloxy free radical; [bis(acetoxy)iodo]benzene In water; acetonitrile at 20℃; for 2.5h; | 81 Example 81-Synthesis OF 2, 3-O-ISOPROPYLIDENEADENOSINE-5-URONIC acid [1651 IODOBENZENE diacetate (11.5 g, 0.0358 mol), TEMPO (0.512 g, 0.0032 mol), and 2', 3-O-ISOPROPYLIDENEADENOSINE (Example 1,5 g, 0.0162 mol) were combined in a 100 mL round bottom flask. To this mixture was added 50 mL of a 1: 1 acetonitrile-water solution. The reaction mixture was stirred for 2.5 h at room temperature. The resulting precipitate was filtered, triturated sequentially with diethyl ether and acetone, and dried in vacuo to afford the desired product as a white solid 4.97 g, 95%. 1H-NMR (DMSO-d6) : 8 1.35 (s, 3H); 1.52 (s, 3H); 4.68 (d, 1H, J=LHZ) ; 5.46 (d, 1H, J= 6.0 Hz); 5. 52 (dd, 1H, J =6.0 Hz); 6.32 (s, 1H); 7.25 (s, 2H, NH2) ; 8.08 (s, 1H); 8.24 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59% | Stage #1: 2',3'-isopropylidene adenosine With sodium hydride In tetrahydrofuran at 0℃; for 0.25h; Stage #2: With p-toluenesulfonyl chloride In tetrahydrofuran at 0℃; for 1h; Stage #3: sodium methylate; tert-butyl (2-oxotetrahydrothiophen-3-yl)carbamate In methanol at 20℃; for 2.25h; Heating / reflux; | 10.1 EXAMPLE 102-amino-4-(((2S,3S,4R,5R)-3,4-dihydroxy-5-(6-(3-morpholinopropylamino)-9H-purin-9-yl)-tetrahydrofuran-2-yl)methylthio)butanoic acid 12aStep 1: methyl 4-(((3aS,4S,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyl-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methylthio)-2-(tert-butoxycarbonylamino)butanoate 8NaH (310 mg 60% mineral oil suspension, 7.74 mmol) was added to a solution of ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyl-tetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methanol 7 (1.19 g, 3.87 mmol) in THF (4 mL) at 0° C. and stirred for 15 min. pTsCl (810 mg, 4.25 mmol) was then added and the reaction mixture was allowed to stir for 1 hour at 0° C. It was diluted in EtOAc (15 mL) and washed sequentially with water (10 mL) and NaCl sat solution (10 mL). The organic layer was dried with Na2SO4, filtered and concentrated in vacuo, dissolved in MeOH and added to a pre-formed solution of thiolactone 4 (1.26 g, 5.81 mmol, 1.5 equiv.) in dry MeOH (5 mL) was treated with 0.5 M solution of NaOMe (11.6 mL, 5.81 mmol, 1.5 equiv.) at room temperature and stirred for 15 min. The mixture was refluxed for 2 hours, and then it was cooled down and concentrated. The residue was diluted in EtOAc (20 mL), washed with water (20 mL) and sat'd NaCl solution (20 mL), dried with Na2SO4, filtered and concentrated in vacuo. The crude product was purified by flash chromatography using 5% MeOH in DCM as the eluent to afford the title compound 8 in 59% yield as white solid (1.27 g)MS: calc 538; found 539 (MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Stage #1: 2',3'-isopropylidene adenosine With pyridine; 2-Chloro-4H-1,3,2-benzodioxaphosphorin-4-one In 1,4-dioxane at 22℃; for 1h; Stage #2: With water In 1,4-dioxane for 0.166667h; Stage #3: triethylamine In dichloromethane; water | ||
Stage #1: 2',3'-isopropylidene adenosine With pyridine; diphenyl hydrogen phosphite at 25℃; for 2h; Inert atmosphere; Stage #2: triethylamine With water In water at 25℃; for 0.5h; Inert atmosphere; | General procedure: To a solution of diphenyl phosphite (1.3 mL, 7.0 mmol) in anhydrous pyridine (8 mL) was added 2′,3′-O-isopropylidene uridine (1, 1.0 g, 3.5 mmol) in anhydrous pyridine (10 mL) dropwise and the reaction mixture was stirred at 25 °C for 2 h. TEA (2.4 mL, 17.5 mmol) and H2O (0.7 mL, 35.0 mmol) were added to the solution and stirred for 30 min. The solution was concentrated in vacuo. Flash column chromatography (CH2Cl2/MeOH 20:1 to 10:1, 0.5% TEA) afforded 7 as a glassy solid (1.3 g). 7 (1.3 g, 2.9 mmol) was dissolved in aqueous TFA (12 mL, 50% v/v) and stirred for 45 min at 25 °C. The solution was concentrated in vacuo. Flash column chromatography (CH2Cl2/MeOH 10:1 to 5:1, 0.5% TEA) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97.7% | Stage #1: (2',3'-O-isopropylidene-β-D-ribofuranosylbenzene-3-carboxamide-5'-yl)phosphonomethylenephosphonic acid bistriethylammonium salt With pyridine; dicyclohexyl-carbodiimide at 20℃; for 20h; Stage #2: 2',3'-isopropylidene adenosine at 65℃; Stage #3: With water at 20℃; for 3h; | 3 Example 3; Synthesis of P1-(2',3'-O-Isopropylideneadenosin-5'-yl)-P2-(2',3'-O-isopropylidene-β-D-ribofuranosylbenzen-3-carboxamide-5'-yl)methylenebis(phosphonate), an analogue of protected nicotinamide adenine dinucleotide. This Example illustrates the synthesis of an important analogue by using a BTA which is reacted with a nucleoside. (2',3'-O-Isopropylidene-β-D-ribofuranosylbenzene-carboxamide-5'-yl)phosphonomethylenephosphonic acid (565 mg, 1.0 mmol) as bistriethylammonium salt is dissolved in pyridine (15 ml) containing DCC (720 mg, 3.5 mmol), and the mixture is stirred at room temperature for 20 hours. 31P NMR analysis shows disappearance of resonance signals (δ 15.46, singlet in pyridine) with concommitant formation of BTA with characteristic multisignal resonances. At this time 2',3'-O-isopropylideneadenosine (552 mg, 1.15 mmol) is added and the reaction mixture is kept at 65 °C until the31P spectrum of the reaction indicates the formation of intermediate (broad signals centered at 8 and 18 ppm). Water is added and the mixture is stirred at room temperature for 3 hours. After concentration in vacuo, the residue is chromatographed on an HPLC column to give P1-(2,3-O-isopropylidene-β-D-ribofuranosylbenzene-3-carboxamide-5'-yl)-P2-(2',3'-O-isopropylideneadenosin-5'-yl)methylenebis(phosphonate) as the bistriethylammonium salt (850 mg, 97.7%). 1H NMR (D2O) δ 1.27-1.31 (t, 18H, Et3N), 1.40 (s, 3H, iPr), 1.46 (s, 3H, iPr), 1.64 (s, 3H, iPr), 1.68 (s, 3H, iPr), 2.05-2.20 (m, 2H, P-CH2-P), 3.21 (q, 12H, Et3N), 4.09-4.12 [m, 4H, H5',H5" (B) and (A)], 4.26-4.28 [m, 1H, H4'(B)], 4.59-4.64 [m, 2H, H4'(A), H2'(B)], 4.80 [1H, H1'(B)], 4.88 [dd, 1H, H3'(B), J1',2' = 5.7 Hz, J2',3' = 6.5 Hz), 5.20 [m, 1H, H3'(A)], 5.30 [dd, 1H, H2'(A), J1',2' = 3.0 Hz, J2',3' = 6.5 Hz], 6.12 [d, 1H, H1'(A)], 7.39 [pseudo t, 1H, H5(B)], 7.46 d, 1H, H4(B), J4,5 = 7.8 Hz], 7.64 [d, 1H, H6(B), J5,6 = 7.8 Hz], 7.67 (s, 1H, H2(B)], 8.15, 8.40 [two 1H singlets, H2(A), H8(A)]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With di-isopropyl azodicarboxylate; triphenylphosphine; In tetrahydrofuran; at 0 - 20℃; for 18h; | To a cooled (0 C) suspension of 2?-3?-O-isopropylidineadenosine (2;22.0 g, 71.8 mmol) and <strong>[23530-40-7]2-nitro-N-methylbenezenesulfonamide</strong> (6;14.6 g, 79.0 mmol) in THF (360 mL) was added PPh3 (32.0 g, 122mmol). DIAD (24.2 mL, 122 mmol) was then added dropwise via syringeduring which time the solution turned yellow and became homogenous.The solution was then stirred for 18 h during which timethe reaction was allowed to warm to r.t. The now brown solution wasthen concentrated in vacuo to afford a viscous brown oil. This oil wasdissolved in MeOH (250 mL) and then cooled to 0 C in an ice bath for1.5 h during which time a yellow precipitate formed. The precipitatewas collected via suction filtration and dried under high-vacuum toafford the sulfonamide 7 as a yellow powder; yield: 30.9 g (85%); mp240-241 C (Lit.20 mp 240-241 C); [alpha]D +30.0 (c 1, CHCl3) {Lit.20 [alpha]D+30.4 (c 1, CHCl3)}.IR (thin film): 3324, 3175, 2988, 1710, 1645, 1544 cm-1. 1H NMR (DMSO-d6, 400 MHz): delta = 8.29 (s, 1 H), 8.14 (s, 1 H), 7.90 (d,J = 9.6 Hz, 1 H), 7.83-7.78 (m, 2 H), 7.70 (m, 1 H), 7.33 (br s, 2 H), 6.18(d, J = 2.0 Hz, 1 H), 5.42 (dd, J = 6.4, 2.4 Hz, 1 H), 5.05 (dd, J = 6.0, 3.2Hz, 1 H), 4.29 (m, 1 H), 3.62-3.56 (m, 2 H), 2.74 (s, 3 H), 1.51 (s, 3 H),1.30 (s, 3 H).1H NMR was in accordance with literature values.2013C NMR (DMSO-d6, 100 MHz): delta = 156.5, 153.2, 149.0, 148.1, 140.6,134.9, 132.7, 130.7, 130.1, 124.7, 119.6, 114.1, 89.3, 84.7, 83.6, 82.2,51.7, 36.1, 27.4, 25.6.LC/MS (ESI): m/z [M + H]+ calcd for C20H24N7O7S: 506.1; found: 506.1 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | Stage #1: biotin With 1,1'-carbonyldiimidazole In N,N-dimethyl-formamide at 40℃; for 1h; Stage #2: 2',3'-isopropylidene adenosine With sodium amide In N,N-dimethyl-formamide at 40℃; for 24h; | 1 150 ml of dimethylformamide, 5 g of biotin and then 4 g of carbonyldiimidazole (denoted by CDI) were introduced into a three-necked flask under nitrogen. The mixture was heated at 40° C. for 1 hour, then 6.3 g of commercial isopropylideneadenosine were added and then 5 g of sodium amide were added. The solution was heated at 40° C. for 24 hours. The dimethylformamide (denoted by DMF) was distilled off without exceeding 40° C. and 200 ml of dichloromethane were added to the residue. The organic phase was washed 3 times with 150 ml of water, dried with sodium sulphate and evaporated under vacuum to dryness. The residue was purified on a silica column, elution being carried out with dichloromethane then dichloromethane 95/methanol 5, to result in a solid product which was taken up in dichloromethane and precipitated with diethyl ether. The precipitate obtained was filtered off, washed with ether and dried under vacuum. Yield=50% Analyses: NMR DMSO 1H 13C 2D: Spectra in accordance Elemental analysis in accordance: C, 51.3; H, 5.89; N, 18.2; O, 19.03; S, 5.92 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
26% | Stage #1: ethanediyl-bis-phosphinic acid tetrachloride; 2',3'-isopropylidene adenosine In triethyl phosphate at 50 - 72℃; Inert atmosphere; Stage #2: With water; triethylamine carbonate at 20℃; Inert atmosphere; Cooling with ice; | 5.10. 2',3'-O-Isopropylideneadenosin-5'-yl-ethylenebis(phosphonate) (30) To a suspension of tetrachloride 28 (1.06 g, 4 mmol) in triethylphosphate (25 mL), a suspension of 2',3'-O-isopropylidene adenosine 29 (614 mg, 2 mmol) in triethylphosphate (25 mL) was added. The resulting mixture was stirred at 50 °C overnight, and then at 72 °C for 2 days, cooled, and added to a solution of TEAB (0.5 M, 20 mL, cooled with ice-water), and stirred at rt overnight. This mixture was extracted with EtOAc, the aqueous layer was concentrated, lyophilized, and purified by preparative HPLC with 70% MeCN/0.1 M TEAB (10-30 linear gradient) to give 30 as a foam (350 mg, 26%).1H NMR (D2O) δ 8.25 (s, 1H), 8.14 (s, 1H), 6.15 (d, J = 2.76 Hz, 1H), 5.34 (dd, J = 6.07, 2.78 Hz, 1H), 5.05 (dd, J = 6.06, 1.94 Hz, 1H), 4.57-4.54 (m, 1H), 3.93-3.86 (m, 2H), 3.07 (q, J = 7.33 Hz, 6H), 1.67-1.56 (m, 2H), 1.54 (s, 3H), 1.45-1.34 (m, 2H), 1.34 (s, 3H), 1.15 (t, J = 7.33 Hz, 9H). 31P NMR (D2O) δ 30.26 (d, J = 73.12 Hz), 22.86 (d, J = 70.80 Hz). HRMS calcd for C15H22N5O9P2 478.0898 (M-H)-, found 478.0932. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | Stage #1: <i>N</i>,<i>N</i>-dimethyl-formamide dimethyl acetal; dibenzylamine In toluene for 24h; Reflux; Stage #2: 2',3'-isopropylidene adenosine In acetonitrile at 45℃; for 24h; | 4.7. N6,N6-Dibenzylformamidine-2',3'-O-isopropylidene adenosine 15 A mixture of freshly distilled dibenzylamine (9.62 g, 48.7 mmol) and N,N-dimethylformamide dimethyl acetal (1.95 g, 16.2 mmol) in acetonitrile (15 mL) was heated at reflux temperature for 24 h. Anhydrous toluene (15 mL) was added and the solution was concentrated in vacuo. The crude residue was dissolved in acetonitrile (15 mL) and added dropwise to a stirring solution of 2',3'-O-isopropylidene adenosine 12 (2.0 g, 6.5 mmol) in acetonitrile (10 mL). The reaction mixture was stirred for 24 h at 45 °C then concentrated in vacuo. Flash chromatography (hexane/EtOAc 1:1) afforded 15 as a white solid (3.19 g, 94%) with spectroscopic characteristics in accordance with the literature.31δH (270 MHz, CDCl3) 9.4 (1H, s, CHN), 8.57 (1H, s, H-2), 8.00 (1H, s, H-8), 7.42-7.18 (10H, m, 2Ph), 5.93 (1H, d, J1',2' 4.6, H-1'), 5.30-5.21 (1H, m, H-2'), 5.15-5.08 (1H, m, H-3'), 4.88 (2H, s, CH2Ph), 4.60-4.53 (1H, m, H-4'), 4.45 (2H, s, CH2Ph), 4.05-3.77 (2H, m, 2H-5'), 1.64, 1.37 (6H, 2s, 2CH3); δC (67.8 MHz, CDCl3) 160.4 (C-6), 159.0 (CHN), 152.0 (C-2), 150.4 (C-4, C-5), 141.5 (C-8), 135.5, 135.1, 129.1, 128.8, 128.6, 128.4, 127.9, 127.6 (C-Ar), 113.8 [C(CH3)2], 93.9 (C-1'), 86.1 (C-2'), 83.1 (C-3'), 81.6 (C-4'), 63.2 (C-5'), 54.6, 47.8 (2CH2), 27.5, 25.1 (2CH3). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With sodium tetrahydroborate In dichloromethane; isopropyl alcohol at 0 - 20℃; for 0.5h; | ((3aR,4R,6R,6aR)-6-(6-Amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methylmethyl 2-hydroxy-6-((2RS,3aS,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)hexylphosphonate (4b) To a 0 oC solution of the protected β-ketophosphonate 3 (0.1900g, 0.30 mmol) in 4:1 isopropanol:CH2Cl2 (10 mL) was added NaBH4 (0.0460 g, 1.2 mmol). The reaction was warmed up to rt and stirred until no starting material remained (TLC ~ 30 min). The reaction was then cooled to 0 oC on ice bath and quenched with 15 mL of sat. NaHCO3. The solution was stirred for 30 min and then extracted with CH2Cl2 30mLx3. The organic layers were combined and dried over Na2SO4. The residue obtained upon concentration was purified by flash chromatography over silica gel (10% and 15% MeOH in CH2Cl2) to furnish a mixture of four diastereoisomers as a white solid (0.1563 g, 82%): mp 30-40 oC; Rf = 0.39 (WS-3-58)(15% MeOH/CH2Cl2); IR (ZnSe) 3271, 2929,2849, 1692, 1596, 1212, 1023 cm-1; 1H NMR (MeOD, 600 MHz, WS-5-61_7May2012): 1H NMR (MeOD, 600 MHz): δ8.305/8.296 (two overlapping d, J= 4.8 Hz, total 1H, H-8), 8.258/8.256 (two overlapping singlet, total 1H, H-2), 6.25 (d, J= 6.0Hz, total 1H, H-1′), 5.51 (m, 1H, H-2′), 5.16 (m,1H, H-3), 4.52-4.47 (m, 2H), 4.34-4.21 (m, 3H), 3.83 (br m, 1H), 3.69-3.65 (m, 3H), 3.20 (m, 1H), 2.95-2.92 (m, 1H), 2.72 (d, J= 12 Hz, total 1H), 1.96-1.87 (m, 2H), 1.76-1.66 (br m, 1H), 1.62(overlapping signal, s, 3H), 1.62-1.53 (overlapping signal, m, 1H),1.41 (overlapping signal, s, 3H), 1.50-1.25 (br m, 6H);13C NMR (MeOD, 150MHz) δ164.8, 156.0, 152.7, 148.9, 140.4-140.3 (3 lines), 119.2,114.2-114.15 (3 lines), 90.6-90.4 (4 lines), 85.5-85.3 (6 lines),84.0-83.8 (4 lines), 81.3-81.2 (3 lines), 65.9-65.8 (4 lines),65.14-65.06 (3 lines), 62.03/62.01, 60.2, 55.7, 53.42, 51.9-51.6 (4lines), 39.7, 37.9/37.8, 32.9/32.8, 28.7-28.3 (5 lines), 25.0-24.9 (3lines), 24.15; 31P NMR (MeOD, 243MHz) δ32.84, 32.70, 32.63; HRESI-MS: calcd for 12C251H3814N716O8PSNa: [M+Na]+:650.2138;found: 650.2114. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | With 2H-tetrazole In tetrahydrofuran; dichloromethane for 2h; Inert atmosphere; | Benzyl 2′,3′-O-isopropylidineadenosine-5′-N,N-diisopropylphosphoamidite Benzyl 2′,3′-O-isopropylidineadenosine-5′-N,N-diisopropylphosphoamidite was prepared using a reported procedure (Iwashita, 2009-see above). Benzyl bis(diisopropylamino)phosphite (0.340 g, 1.00 mmol, 1equiv, prepared using a reported procedure,2and 2′,3′-O-isopropylidineadenosine(0.300 g, 1.00 mmol, 1 equiv) were dissolved in 6 mL of distilled CH2Cl2 under an atmosphere of N2. To this mixture, a solution of 1H-tetrazole (0.07 g, 1 mmol, 1 equiv) in 2mL THF was added, resulting after a few minutes in a cloudy solution which was stirred for 2 h. The reaction was then quenched with 5 mL of sat. aq NaHCO3 and extracted with CH2Cl2 (5 mL x 2). The combined organic layers were dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by column chromatography using 6:4:1 EtOAc:Hex:NEt3 to afford a low-melting white solid (0.344 g, 63% yield): mp. 25-35oC; Rf = 0.29 (40% EA inHex); IR (ZnSe, cm-1, WS-7-97)3321, 3168, 2967, 2926, 2866, 1644, 1597, 1202, 1077, 1023, 975, 734 cm-1; 1H NMR (CDCl3, 400 MHz, WS-7-97-col): δ 8.34 (s, 1H, H-8), 8.15/8.08 (two s, total 1H, H-2), 7.40-7.22 (m, 5H), 6.20/6.17 (two d, J= 2.8 Hz, total 1H, H-2′), 5.61 (br s, 2H, NH2), 5.29/5.20 (two dd, J= 6.0/6.4, 2.8/2.8 Hz, total 1H, H-1′), 5.02/4.98 (two d, J = 6.4, 2.4 Hz, total 1H, H-3′), 4.78-4.61 (m 2H, H-5′), 4.53 (m 1H, H-4′), 3.96-3.73 (m, 2H, CH2Ph), 3.66-3.52 (m, 2H, CH(CH3)2), 1.65 (s, 3H), 1.40/1.39 (two s, 3H), 1.19 (d, J= 7.2 Hz, 3H), 1.17 (d, J= 7.2 Hz, 3H), 1.13 (d, J= 6.8 Hz, 3H), 1.11 (d, J= 6.8 Hz, 3H); 13C NMR (CDCl3, 100 MHz, WS-7-97-col) δ 155.4, 153.2, 149.66/149.50 (two s), 139.47/139.43 (two s), 139.16/139.09 (two s), 128.31/128.26 (two s), 127.41/127.34 (two s), 127.01/127.00 (two s), 120.14/119.93 (two s), 114.15/114.06 (two s), 91.48/91.16 (two s), 86.36/86.27/86.18 (three s), 84.75/84.71 (two s), 81.83/81.80 (two s), 65.68-65.39 (four lines), 65.63-63.26 (four lines), 43.08-42.94 (four lines), 27.20/27.18 (two s), 25.32,24.61-24.49 (five lines); HRESI-MS (WS-7-97): calcd for12C261H3714N616O5PNa:[M+Na]+: 567.2461; found: 567.2477. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With dmap; dicyclohexyl-carbodiimide In chloroform at 20℃; for 3h; regioselective reaction; | preparation of 5' 2',3'-O-isopropylidenadenosine esters (3a-3e) General procedure: 2',3'-O-isopropylidenadenosine 2 (3.9 mmol) and the appropriate N-Boc-protected amino acid (3.9 mmol) were dissolved in 40 mL of anhydrous chloroform. Then, dicyclohexylcarbodiimide (4.6 mmol) and 4-dimethylaminopyridine (1.15 mmol) were added and stirred under anhydrous atmosphere for 3 h. The suspension was filtered and the solution was washed with 20 mL of saturated solution of Na2CO3 and then with 20 mL of an aqueous solution of citric acid at 20 % w/v. The organic layer was dried with Na2SO4 and the solvent was removed under reduced pressure. The products were purified by column chromatography (CHCl3-MeOH, 95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With dmap; dicyclohexyl-carbodiimide In chloroform at 20℃; for 3h; regioselective reaction; | preparation of 5' 2',3'-O-isopropylidenadenosine esters (3a-3e) General procedure: 2',3'-O-isopropylidenadenosine 2 (3.9 mmol) and the appropriate N-Boc-protected amino acid (3.9 mmol) were dissolved in 40 mL of anhydrous chloroform. Then, dicyclohexylcarbodiimide (4.6 mmol) and 4-dimethylaminopyridine (1.15 mmol) were added and stirred under anhydrous atmosphere for 3 h. The suspension was filtered and the solution was washed with 20 mL of saturated solution of Na2CO3 and then with 20 mL of an aqueous solution of citric acid at 20 % w/v. The organic layer was dried with Na2SO4 and the solvent was removed under reduced pressure. The products were purified by column chromatography (CHCl3-MeOH, 95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With dmap; dicyclohexyl-carbodiimide In chloroform at 20℃; for 3h; regioselective reaction; | preparation of 5' 2',3'-O-isopropylidenadenosine esters (3a-3e) General procedure: 2',3'-O-isopropylidenadenosine 2 (3.9 mmol) and the appropriate N-Boc-protected amino acid (3.9 mmol) were dissolved in 40 mL of anhydrous chloroform. Then, dicyclohexylcarbodiimide (4.6 mmol) and 4-dimethylaminopyridine (1.15 mmol) were added and stirred under anhydrous atmosphere for 3 h. The suspension was filtered and the solution was washed with 20 mL of saturated solution of Na2CO3 and then with 20 mL of an aqueous solution of citric acid at 20 % w/v. The organic layer was dried with Na2SO4 and the solvent was removed under reduced pressure. The products were purified by column chromatography (CHCl3-MeOH, 95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With dmap; dicyclohexyl-carbodiimide In chloroform at 20℃; for 3h; regioselective reaction; | preparation of 5' 2',3'-O-isopropylidenadenosine esters (3a-3e) General procedure: 2',3'-O-isopropylidenadenosine 2 (3.9 mmol) and the appropriate N-Boc-protected amino acid (3.9 mmol) were dissolved in 40 mL of anhydrous chloroform. Then, dicyclohexylcarbodiimide (4.6 mmol) and 4-dimethylaminopyridine (1.15 mmol) were added and stirred under anhydrous atmosphere for 3 h. The suspension was filtered and the solution was washed with 20 mL of saturated solution of Na2CO3 and then with 20 mL of an aqueous solution of citric acid at 20 % w/v. The organic layer was dried with Na2SO4 and the solvent was removed under reduced pressure. The products were purified by column chromatography (CHCl3-MeOH, 95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With dmap; dicyclohexyl-carbodiimide In chloroform at 20℃; for 3h; regioselective reaction; | preparation of 5' 2',3'-O-isopropylidenadenosine esters (3a-3e) General procedure: 2',3'-O-isopropylidenadenosine 2 (3.9 mmol) and the appropriate N-Boc-protected amino acid (3.9 mmol) were dissolved in 40 mL of anhydrous chloroform. Then, dicyclohexylcarbodiimide (4.6 mmol) and 4-dimethylaminopyridine (1.15 mmol) were added and stirred under anhydrous atmosphere for 3 h. The suspension was filtered and the solution was washed with 20 mL of saturated solution of Na2CO3 and then with 20 mL of an aqueous solution of citric acid at 20 % w/v. The organic layer was dried with Na2SO4 and the solvent was removed under reduced pressure. The products were purified by column chromatography (CHCl3-MeOH, 95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64.5% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.21 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.21 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-p-tolylacetate (b10) White powder, 64.5%, mp 83-85 °C; 1H NMR (DMSO-d6): 1.32 (s, 3H, CH3); 1.54 (s, 3H, CH3); 2.25 (s, 3H, CH3); 3.54 (d, J = 3.1 Hz, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.29 (m, 1H, CH); 4.38 (s, 1H, CH); 5.00 (d, J = 2.9 Hz, 1H, CH); 5.38 (d, J = 4.8 Hz, 1H, CH); 6.17 (d, J = 2.4 Hz, 1H, CH); 7.06 (s, 4H, ArH); 7.38 (s, 2H, NH2); 8.17 (d, J = 5.7 Hz, 1H, CHpurine); 8.27 (d, J = 3.2 Hz, 1H, CHpurine); EIMS m/z 439 (M+). Anal. Calcd for C22H25N5O5: C, 60.13; H, 5.73; N, 15.94; Found: C, 60.32; H, 5.71; N, 15.89. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50.8% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.22 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.22 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3,4-dichlorophenyl)acetate (b11) White powder, 50.8%, mp 90-92 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.55 (s, 3H, CH3); 3.64-3.74 (m, 2H, CH2); 4.18-4.22 (m, 1H, CH); 4.28-4.32 (m, 1H, CH); 4.36-4.40 (m, 1H, CH); 5.03-5.05 (m, 1H, CH); 5.43-5.45 (m, 1H, CH); 6.19 (d, J = 2.2 Hz, 1H, CH); 7.20-7.22 (m, 1H, ArH); 7.37 (s, 2H, NH2); 7.52-7.55 (m, 2H, ArH); 8.17 (d, J = 1.9 Hz, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 493 (M+). Anal. Calcd for C21H21Cl2N5O5: C, 51.02; H, 4.28; Cl, 14.34; N, 14.17; Found: C, 51.20; H, 4.27; Cl, 14.31; N, 14.13. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80.5% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.25 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.25 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3,4-dimethoxyphenyl)acetate (b12) White powder, 80.5%, mp 132-134 °C; 1H NMR (DMSO-d6): 1.33 (s, 6H, CH3); 1.55 (s, 6H, CH3); 3.64-3.74 (m, 2H, CH2); 4.18-4.22 (m, 1H, CH); 4.28-4.32 (m, 1H, CH); 4.36-4.40 (m, 1H, CH); 5.03-5.05 (m, 1H, CH); 5.43-5.45 (m, 1H, CH); 6.19 (d, J = 2.2 Hz, 1H, CH); 7.20-7.22 (m, 1H, ArH); 7.37 (s, 2H, NH2); 7.52-7.55 (m, 2H, ArH); 8.17 (d, J = 1.9 Hz, 1H, CHpurine); 8.30 (s, 1H, CHpurine). Anal. Calcd for C23H27N5O7: C, 56.90; H, 5.61; N, 14.43; Found: C, 56.83; H, 5.62; N, 14.47. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54.8% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.27 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.27 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(2-chlorophenyl)acetate (b13) White powder, 54.8%, mp 155-156 °C; 1H NMR (DMSO-d6): 1.32 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.54 (d, J = 3.1 Hz, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.29 (m, 1H, CH); 4.38 (s, 1H, CH); 5.00 (d, J = 2.9 Hz, 1H, CH); 5.38 (d, J = 4.8 Hz, 1H, CH); 6.17 (d, J = 2.4 Hz, 1H, CH); 7.06 (s, 4H, ArH); 7.38 (s, 2H, NH2); 8.17 (d, J = 5.7 Hz, 1H, CHpurine); 8.27 (d, J = 3.2 Hz, 1H, CHpurine); EIMS m/z 459 (M+). Anal. Calcd for C21H22ClN5O5: C, 54.85; H, 4.82; Cl, 7.71; N, 15.22; Found: C, 54.97; H, 4.81; Cl, 7.69; N, 15.18. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78.9% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.29 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.29 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(2-fluorophenyl)acetate (b14) White powder, 78.9%, mp 104-106 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.64-3.74 (m, 2H, CH2); 4.22 (d, J = 6.1 Hz, 1H, CH); 4.31 (d, J = 11.2 Hz, 1H, CH); 4.39 (s, 1H, CH); 5.03 (s, 1H, CH); 5.39 (d, J = 5.6 Hz, 1H, CH); 6.20 (s, 1H, CH); 7.10-7.18 (m, 2H, ArH); 7.25-7.32 (m, 2H, ArH); 7.39 (s, 2H, NH2); 8.17-8.19 (m, 1H, CHpurine); 8.29 (s, 1H, CHpurine); EIMS m/z 443 (M+). Anal. Calcd for C21H22FN5O5: C, 56.88; H, 5.00; F, 4.28; N, 15.79; Found: C, 56.72; H, 5.00; F, 4.29; N, 15.84. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63.1% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.3 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.3 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3-bromophenyl)acetate (b1) White powder, 63.1%, mp 174-176 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.56-3.67 (m, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.36-4.39 (m, 1H, CH); 5.01-5.04 (m, 1H, CH); 5.42-5.44 (m, 1H, CH); 6.19 (s, 1H, CH); 7.16 (d, J = 8.3 Hz, 2H, ArH); 7.39 (s, 2H, NH2); 7.47 (d, J = 8.2 Hz, 2H, ArH); 8.17 (s, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 503 (M+). Anal. Calcd for C21H22BrN5O5: C, 50.01; H, 4.40; Br, 15.84; N, 13.89; Found: C, 50.17; H, 4.42; Br, 15.78; N, 13.84. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82.4% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.4 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.4 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3-chlorophenyl)acetate (b2) White powder, 82.4%, mp 144-146 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.55 (s, 3H, CH3); 3.64-3.74 (m, 2H, CH2); 4.18-4.22 (m, 1H, CH); 4.28-4.32 (m, 1H, CH); 4.36-4.40 (m, 1H, CH); 5.03-5.05 (m, 1H, CH); 5.43-5.45 (m, 1H, CH); 6.19 (d, J = 2.2 Hz, 1H, CH); 7.20-7.22 (m, 1H, ArH); 7.37 (s, 2H, NH2); 7.52-7.55 (m, 3H, ArH); 8.17 (d, J = 1.9 Hz, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 459 (M+). Anal. Calcd for C21H22ClN5O5: C, 54.85; H, 4.82; Cl, 7.71; N, 15.23; Found: C, 54.67; H, 4.82; Cl, 7.74; N, 15.29. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80.5% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.7 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.7 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(4-fluorophenyl)acetate (b3) White powder, 80.5%, mp 154-156 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.57-3.67 (m, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.37-4.40 (m, 1H, CH); 5.02-5.04 (m, 1H, CH); 5.42-5.44 (m, 1H, CH); 6.18 (d, J = 2.2 Hz, 1H, CH); 7.07-7.13 (m, 2H, ArH); 7.21-7.25 (m, 2H, ArH); 7.38 (s, 2H, NH2); 8.17 (s, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 443 (M+). Anal. Calcd for C21H22FN5O5: C, 56.88; H, 5.00; F, 4.28; N, 15.79; Found: C, 56.97; H, 5.01; F, 4.27; N, 15.73. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50.5% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.9 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.9 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(4-bromophenyl)acetate (b4) White powder, 50.5%, mp 136-138 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.56-3.67 (m, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.36-4.39 (m, 1H, CH); 5.01-5.04 (m, 1H, CH); 5.42-5.44 (m, 1H, CH); 6.19 (s, 1H, CH); 7.16 (d, J = 8.3 Hz, 2H, ArH); 7.39 (s, 2H, NH2); 7.47 (d, J = 8.2 Hz, 2H, ArH); 8.17 (s, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 503 (M+). Anal. Calcd for C21H22BrN5O5: C, 50.01; H, 4.40; Br, 15.84; N, 13.89; Found: C, 50.18; H, 4.39; Br, 15.79; N, 13.85. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
66.3% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.10 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.10 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(4-chlorophenyl)acetate (b5) White powder, 66.3%, mp 160-162 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.58-3.68 (m, 2H, CH2); 4.16-4.21 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.36-4.40 (m, 1H, CH); 5.02-5.04 (m, 1H, CH); 5.42-5.44 (m, 1H, CH); 6.18 (d, J = 2.2 Hz, 1H, CH); 7.22 (d, J = 8.4 Hz, 2H, ArH); 7.34 (d, J = 8.4 Hz, 2H, ArH); 7.39 (s, 2H, NH2); 8.17 (s, 1H, CHpurine); 8.30 (s, 1H, CHpurine); EIMS m/z 459 (M+). Anal. Calcd for C21H22ClN5O5: C, 54.85; H, 4.82; Cl, 7.71; N, 15.23; Found: C, 54.67; H, 4.82; Cl, 7.74; N, 15.29. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
79.8% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.13 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.13 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3-fluorophenyl)acetate (b6) White powder, 79.8%, mp 177-179 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.64-3.74 (m, 2H, CH2); 4.22 (d, J = 6.1 Hz, 1H, CH); 4.31 (d, J = 11.2 Hz, 1H, CH); 4.39 (s, 1H, CH); 5.03 (s, 1H, CH); 5.39 (d, J = 5.6 Hz, 1H, CH); 6.20 (s, 1H, CH); 7.10-7.18 (m, 2H, ArH); 7.25-7.32 (m, 2H, ArH); 7.39 (s, 2H, NH2); 8.17-8.19 (m, 1H, CHpurine); 8.29 (s, 1H, CHpurine); EIMS m/z 443 (M+). Anal. Calcd for C21H22FN5O5: C, 56.88; H, 5.00; F, 4.28; N, 15.79; Found: C, 56.69; H, 5.01; F, 4.28; N, 15.85. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61.1% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.14 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.14 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(4-hydroxyphenyl)acetate (b7) White powder, 61.1%, mp 168-170 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.51 (d, J = 3.7 Hz, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.36-4.39 (m, 1H, CH); 5.00-5.03 (m, 1H, CH); 5.39-5.41 (m, 1H, CH); 6.18 (d, J = 2.4 Hz, 1H, CH); 6.58-6.64 (m, 3H, ArH); 7.05 (t, J = 8.2 Hz, 1H, ArH); 7.36 (s, 2H, NH2); 8.17 (s, 1H, CHpurine); 8.28 (s, 1H, CHpurine); 9.35 (s, 1H, OH); EIMS m/z 441 (M+). Anal. Calcd for C21H23N5O6: C, 57.14; H, 5.25; N, 15.86; Found: C, 57.33; H, 5.21; N, 15.80. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83.5% | With di-isopropyl azodicarboxylate; triphenylphosphine; In tetrahydrofuran; at 20℃;Cooling with ice; | General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.15 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(2-hydroxyphenyl)acetate (b8) White powder, 83.5%, mp 142-144 C; 1H NMR (DMSO-d6): 1.32 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.51 (s, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.23-4.27 (m, 1H, CH); 4.38-4.41 (m, 1H, CH); 4.95-4.97 (m, 1H, CH); 5.21-5.23 (m, 1H, CH); 6.15 (d, J = 2.6 Hz, 1H, CH); 6.67 (t, J = 7.4 Hz, 1H, ArH); 6.78 (d, J = 7.6 Hz, 1H, ArH); 6.99 (d, J = 7.4 Hz, 1H, ArH); 7.03-7.07 (m, 1H, ArH); 7.35 (s, 2H, NH2); 8.17 (s, 1H, CHpurine); 8.22 (s, 1H, CHpurine); 9.51 (s, 1H, OH); EIMS m/z 441 (M+). Anal. Calcd for C21H23N5O6: C, 57.14; H, 5.25; N, 15.86; Found: C, 57.33; H, 5.21; N, 15.83. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81.3% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 20℃; Cooling with ice; | 2.17 2.1.1. General procedure for preparation of compounds b General procedure: Triphenylphosphine (1.5 mmol), 20,30-O-isopropylideneadenosine(1.0 mmol), and an appropriately substituted benzeneacetic acids(1.0 mmol) were dissolved in anhydrous THF (20 mL). After thesolution was cooled in an ice bath, diisopropyl azodicarboxylate(DIAD 2.0 mmol) was added dropwise, and the resulted mixturewas stirred at room temperature for several hours (monitored byTLC). Evaporation to dryness and flash chromatography (AcOEt/petroleum ether, from 5:1 to 3:1) afforded compounds b(Scheme 3). 2.1.17 ((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl 2-(3-hydroxyphenyl)acetate (b9) White powder, 81.3%, mp 172-174 °C; 1H NMR (DMSO-d6): 1.33 (s, 3H, CH3); 1.54 (s, 3H, CH3); 3.51 (d, J = 3.7 Hz, 2H, CH2); 4.16-4.20 (m, 1H, CH); 4.26-4.30 (m, 1H, CH); 4.36-4.39 (m, 1H, CH); 5.00-5.03 (m, 1H, CH); 5.39-5.41 (m, 1H, CH); 6.18 (d, J = 2.4 Hz, 1H, CH); 6.58-6.64 (m, 3H, ArH); 7.05 (t, J = 8.2 Hz, 1H, ArH); 7.36 (s, 2H, NH2); 8.17 (s, 1H, CHpurine); 8.28 (s, 1H, CHpurine); 9.35 (s, 1H, OH); EIMS m/z 441 (M+). Anal. Calcd for C21H23N5O6: C, 57.14; H, 5.25; N, 15.86; Found: C, 57.34; H, 5.21; N, 15.81. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 0 - 25℃; for 1.5h; Stage #2: benzoyl chloride at 0 - 25℃; for 2.5h; | N,N-Dibenzoyl-2',3'-O-isopropylideneadenosine 4 TMSCl (2.50 mL, 19.7 mmol, 3.0 eq.) was slowly added to a suspension of 2,3-O-isopropylideneadenosine 4(2.00 g, 6.50 mmol, 1.0 eq.) in dry pyridine (20 mL) at 0 °C, and the mixture allowed to warm to rt while stirring for 1.5 h. The mixture was again cooled to 0 °C and BzCl (1.66 mL, 14.3 mmol, 2.2 eq.) added and the mixture allowed to warm to rt while stirring for 2.5 h. The reaction was cooled to 0 °C and quenched by the careful addition of water (5 mL). The reaction mixture was diluted with CHCl3 (50 mL) and water (50 mL) and the phases separated. The organic phase was washed with H2SO4(1 M, 50 mL), sat. aqueous NaHCO3 (50 mL), sat. aqueous CuSO4(50 mL), H2SO4 (1 M, 50 mL) and water (50 mL). The organic phase was dried over Na2SO4 and concentrated to a white powder. The residue was purified by column chromatography (DCM to 99:1DCM:MeOH) to give the product 4 as a white foamy solid (3.32 g, 99%): Rf= 0.07 (99:1 DCM:MeOH); mp 129-133 °; δH (500.1MHz, CDCl3): 8.63 (1 H, s, H-2),8.24 (1 H, s, H-8), 7.86-7.83 (4 H,m, H-2''), 7.51-7.48 (2 H, m, H-4''), 7.38-7.34 (4 H, m, H-3''), 5.94 (1 H, d, J 4.5, H-1′), 5.21 (1 H, dd, J 6.0, 4.5, H-2′), 5.09(1 H, dd, J 6.0, 1.4, H-3′), 4.57-4.53 (1 H, m, H-4'), 3.97 (1 H, dd, J 12.7, 1.7, H-5'a), 3.79 (1 H, dd, J 12.7,2.1, H-5'b), 1.65 (3 H, s, C(CH3)2), 1.38 (3 H,s, C(CH3)2); δC(125.8 MHz, CDCl3): 172.2 (C=O),152.6 (C-4), 152.0 (C-2), 151.7 (C-6), 144.5 (C-8), 133.9(C-1''), 133.3 (C-4''), 129.6 (C-2''),129.0 (C-3'', C-5), 114.4 (C(CH3)2),94.3 (C-1′), 86.6 (C-4′), 83.4 (C-2′), 81.7 (C-3′), 63.3(C-5′), 27.7, 25.3 (C(CH3)2); m/z(ES+) 554 ([M+K]+, 100%), 538 ([M+Na]+, 59). Data are in agreement with the literature |
68% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 0℃; Stage #2: benzoyl chloride | |
63% | Stage #1: 2',3'-isopropylidene adenosine With pyridine; chloro-trimethyl-silane at 0 - 20℃; for 1.5h; Inert atmosphere; Stage #2: benzoyl chloride at 0 - 20℃; for 2.5h; Inert atmosphere; Stage #3: With sulfuric acid In water Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With sodium hydride In toluene for 24h; Reflux; Inert atmosphere; | Silicon phthalocyanine 1. General procedure: A mixture of SiPcCl2 (40mg, 0.065mmol), adenosin 7 (177mg, 0.52mmol), and NaH (0.42mmol) were refluxed in toluene (20ml) for 24h. After evaporating the solvent in vacuo, the residue was dissolved in CH2Cl2 and then washed with water. The organic layers were collected, dried over anhydrous MgSO4, and concentrated to afford crude product, which was further purified by column chromatography (silica gel) using tetrahydrofuran (THF) as eluent, followed by size-exclusion chromatography by using THF as the eluent to give a blue solid 1 (48mg, 60%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With sodium hydride In toluene for 36h; Inert atmosphere; Reflux; | 3.2 Synthesis of bis[5'-(2′,3′-O-isopropyl)adenosine oxy]silicon phthalocyanine Under nitrogen, silicon phthalocyanine dichloride (40 mg, 0.065mmol), 2 ', 3'-O- isopropyl - adenosine (0.260 ~ 0.650mmol, preferably 0.52mmol) and NaH (0.48 ~ 0.60mmol , preferably 0.42mmol) were added to toluene 10 ~ 40ml (preferably 20ml) and refluxed for 12 to 48 hours (preferably 36 hours). The solvent was removed by rotary evaporation under vacuum, washed with water, the crude product was blue. The crude product was purified by a silica gel column, using acetone as eluant target component concentrate to give a blue product was dried to a yield of 60% |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | In 1,4-dioxane at 101℃; for 20h; Inert atmosphere; | Compounds 3a and 3b (general procedure) General procedure: A mixture of equimolar amounts of adenosine 1a or 1b and tetraethyl ethene-1,1-diylbis(phosphonate) (2a) in 4 mL of dioxane was refluxed for 20 h under argon. The solvent was removed under reduced pressure. In the synthesis of 3b, the residue was washed with toluene, the precipitate was filtered off, and the filtrate was evaporated and dried under reduced pressure (oil pump) until constant weight. N6-[2,2-Bis(diethoxyphosphoryl)ethyl]-2′,3′-O-isopropylideneadenosine (3a). Yield 1.82 g (92%), oily material. IR spectrum, ν, cm-1: 3417-3100 br (NH, OH), 1622 s (C=C), 1245 m (P=O), 1161 s (POC), 1026 s (COC). 1H NMR spectrum (CDCl3), δ, ppm: 1.32-1.36 m (12H, CH2CH3), 1.38 s and 1.64 s [3H each, C(CH3)2], 2.91 t.t (1H, CHP, 3JHH = 6.4, 2JPH = 23.0 Hz), 3.77-3.80 m and 3.96-3.99 m (1H each, CH2OH), 4.16-4.26 m (10H, OCH2CH3, NCH2), 4.53 br.s (1H, 4'-H), 5.10-5.12 m (1H, 3'-H), 5.19-5.21 m (1H, 2'-H), 5.86 d (1H, 1'-H, 3JHH = 4.5 Hz), 6.93 br.s (1H, NH), 7.82 (1H, 8-H), 8.33 (1H, 2-H). 13C NMR spectrum (CDCl3), δC, ppm: 16.2, 16.3 (CH3), 25.2 and 27.9 [C(CH3)2], 36.6 (CP, 1JPC = 131.6 Hz), 37.2 (CH2N), 38.1 (CP, 1JPC = 130.2 Hz), 62.8 d (POC, 2JPC = 6.6 Hz), 63.1 d (POC, 2JPC = 6.6 Hz), 63.4 (CH2OH), 81.7 (CH), 83.1 (CH), 86.1 (CH), 94.3 (CH), 113.9 (C5), 121.6 [C(CH3)2], 139.7 (C8), 148.5 (C4), 152.5 (C2). 31P NMR spectrum (CDCl3): δP 21.11 ppm. Mass spectrum, m/z: 608 [M + H]+, 630 [M + Na]+, 646 [M + K]+. Found, %: C 45.35; H 6.47; N 11.44; P 10.31. C23H39N5O10P2. Calculated, %: C 45.47; H 6.43; N 11.53; P 10.21. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | In water; | General procedure: A solution of the corresponding bisphosphonic acid in 40 mL of water was added to 0.2 g of adenosine. The reaction mixture was stirred for 2-3 h. After removing the solvent, the residue was washed with acetone and dried in a vacuum to a constant weight. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With chloro-trimethyl-silane; tert.-butylnitrite; In dichloromethane; at 20℃;Inert atmosphere; | To a solution of 2 (20.0 g, 65.2 mmol) in dry dichloromethane was dropwise added TMCS (57.7 ml, 456.1 mmol) under argon atmosphere at room temperature, after short time. To the solution was dropwis added tert-butyl nitrite (59.6 ml, 547.3 mmol), then stirred at room temperature for overnight. The mixture was quenched with saturated NaHCO3, layers were separated, the water layer was extracted with chloroform (200 ml). The combined organic layers were dried with Na2SO4, filtered and partly evaporated. The residue was purified by column chromatography (CH2Cl2: MeOH=10:1) to give the compound 3 in 60% yield, white solid (12.3 g). 1H NMR (400 MHz, DMSO-d6) delta 8.88 (s, 1H), 8.83 (s, 1H), 6.30 (d, J = 2.4 Hz, 1H), 5.43 (dd, J = 6.1, 2.4 Hz, 1H), 5.00 (dd, J = 6.1, 2.3 Hz, 1H), 4.38 - 4.29 (m, 1H), 3.58 (dd, J = 4.6, 3.0 Hz, 2H), 1.57 (s, 3H), 1.35 (s, 3H). 13C NMR (100 MHz, DMSO-d6) delta 151.62, 150.95, 149.28, 145.52, 131.06, 113.24, 90.55, 87.13, 83.68, 81.12, 61.12, 26.66, 24.81. |
60% | With chloro-trimethyl-silane; n-Butyl nitrite; In dichloromethane; for 0.25h;Inert atmosphere; Darkness; | 20 g of 2 ', 3'-isopropylideneuridine (compound of formula II) was dissolved in anhydrous dichloromethane,In the argon protection,In the dark and under normal conditions, 63.4 ml of trimethylchlorosilane was slowly added dropwise,After stirring for 15 min, 59.3 ml of n-butyl nitrite was slowly added dropwise,Stir the reaction after overnight stirring.The organic phase was collected by extraction with chloroform. The organic phase was combined, dried over anhydrous NaSO4, filtered and evaporated to dryness. The residue was separated by silica gel column chromatography (eluent: dichloromethane: methanol = 10: 1v / V) to give 12.7 g of the white product (compound represented by the formula III) in a yield of 60%. EI: 326. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59% | With di-isopropyl azodicarboxylate; triphenylphosphine In tetrahydrofuran at 0 - 20℃; for 18h; | N-(((3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)methyl)-N-(2-fluoroethyl)-2-nitrobenzenesulfonamide (S8) General procedure: To a solution of acetonide-protected 8-methyl-adenosine 8b (1.3 g, 4.045 mmol) in 40 mL dry THF was added N-cyclopropyl-2-nitrobenzenesulfonamide (S4) (2.0 g, 8.1 mmol) in 10 mL of THF, followed by triphenylphosphine(2.12 g, 8.1 mmol) and the resulting mixture was cooled to 0 °C. Diisopropyl azodicarboxylate (1.6 mL, 8.1 mmol) was added dropwise and the reaction mixture was stirred at room temperature overnight. The solvent was removed under reduced pressure and the residue was purified by silica gel column chromatography, eluting with a gradientof 0-10% MeOH/DCM. Fractions containing the desired product were pooled, concentrated, and dried under vacuum to yield to 0.83 g of S7 (38% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In tetrahydrofuran; at 0 - 20℃; for 2h; | The synthesis of phosphorylated derivatives of 2?, 3?-O-isopropylideneadenosine was carried out by the following method. 2?, 3?-O-isopropylidene adenosine (I) was reactedwith <strong>[777-52-6]4-nitrophenyl phosphorodichloridate</strong> (II) in the presence of triethylamine (TEA) in dry tetrahydrofuran (THF) at 0 C and stirred at room temperature for 2 h. Progress of the reaction was monitored at frequent intervals of time and formation of intermediate (III) was ascertained after 2 h by thin layer chromatography (TLC). Further, the intermediate (III) was reacted with various bioactive secondary amines and primary amines IV(a-k) in the presence of TEA to obtain the title compounds V(a-k) in high yields (70-88%). To enhance the permeability of nucleoside analogue into the cell 4-NO2-phosphorodichloridate was taken as phosphorylayting agent [23, 24]. It acts as a bridge in connecting nucleoside to various bioactive secondary and primary amines. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With dicyclohexyl-carbodiimide In water; N,N-dimethyl-formamide at -253.16 - 4.84℃; for 25h; | 20:30-Isopropylideneadenosine 50-hypodiphosphate (AhDP)was synthesized according to the method proposed bySetondji et al. (1970). Tri-n-butylammonium hypodiphosphate(2.048 g, 5.9 mmol) and 20:30-isopropylideneadenosine (AlfaAesar; 0.461 g, 1.5 mmol) were dissolved in dimethylformamide(DMF, 30 ml). The reaction mixture was cooled toa temperature in the range 273-278 K and a solution of N,N0-dicyclohexylcarbodiimide (DCC) (Applichem; 1.733 g,8.4 mmol) in DMF (5 ml) was added. For a 5 h reaction time,the mixture was stirred at low temperature and then stirredagain at room temperature for 16 h. After addition of distilled water (300 ml), stirring was continued for 4 h. The mixture wasthen filtered and evaporated to dryness. The product (tri-nbutylammoniumsalt; yield 500 mg, 52%) was isolated on asilica-gel column with a dioxane-H2O-NH3 mixture (6:5:1v/v/v). HRMS (H2O/CH3OH): m/z = 450.0571 [M - H]-(calculated [C13H18N5O9P2]- 450.0585). 1H NMR (600 MHz,D2O, 300 K): δ 8.45 (s, H2), 8.16 (s, H8), 6.22 (d, J = 3.55 Hz,1H, H1'), 5.37 (dd, 3J = 6.3 Hz, 1H, H2'), 5.24 (dd, 3J = 6.36 Hz,1H, H3'), 4.64 (m, 1H, H4'), 4.24-4.12 (m, 2H, H5'A andH5'B), 1.69 (s, 3H, CH3), 1.46 (s, 3H, CH3); 13C{1H} NMR(151 MHz, D2O, 300 K): δ 155.21 (C6), 152.52 (C8), 148.54(C4), 140.13 (C2), 118.37 (C5), 114.98 (C10), 89.78 (C1'), 83.81(C2'), 81.34 (C3'), 84.71 (C4', d, 3JPα-C4' = 6.78 Hz), 64.73 (C5',d, 2JPα-C5' = 13.18, 3JPβ-C5' = 5.01 Hz), 26.16 (CH3), 24.40(CH3); 31P NMR (243 MHz, D2O, 300 K): δ 12.06 (d), 6.00 (d),1JPα-Pβ = 683 Hz. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With toluene-4-sulfonic acid at 20℃; for 14h; | 1.1 first step:[(3aR, 4R, 6R, 6aR)-6-(6-amino-9H- purine-9-yl)-2,2-methyl-tetrahydro-2H-furan[3,4-d][1,3]dioxolane-4-yl]methanolSynthesis of (I-2): to(2R, 3R, 4S, 5R)-2-(6-amino-9H- purine-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol(Adenosine, I-1, 50.0 g, 187 mmol) in acetone (1 L) solution,Add p-toluenesulfonic acid (96.6 g, 561 mmol)And triethyl orthoformate (83.1 g, 561 mmol),The resulting solution was stirred at room temperature for 14 hours.It was then basified to pH ≈8 with a saturated aqueous solution of potassium carbonate.Filter the reaction mixture,The filtrate was further concentrated in vacuo to a white solid.The solid product is collected by filtration,And washed with ethyl acetate,Vacuum drying,45 g (yield: 78%) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
37% | Stage #1: 2',3'-isopropylidene adenosine In N,N-dimethyl-formamide at 20 - 30℃; for 0.25h; Stage #2: With N-chloro-succinimide In N,N-dimethyl-formamide at 20 - 30℃; for 22h; | 2 Example 2: Chlorination To a mixture of compound 2 (10 g, 1 eq) and DMF (100 ml_, 10 v/w) was added sulfuric acid (0.9 mL, 0.5 eq) and the mixture was stirred at 20-30 °C for 15 minutes. To the reaction mixture was first added N-chlorosuccinimide (7.38 g, 1.5 eq) and, after 6 hours, a further 0.2 eq of NCS was added. The reaction mixture was stirred at 20-30 °C for 22 hours, monitored by HPLC. The reaction mass was quenched into a 7 % sodium bicarbonate solution (10 v/w) and 35 % sodium chloride solution (20 v/w) and stirred at 20- 30 °C for 15 minutes. To the reaction mixture was added ethyl acetate (20 v/w) and the mixture was stirred at 20-30 °C for 10 minutes. The aqueous layer was extracted with ethyl acetate (20 v/w). The organic layer was washed with DM water (2c10 v/w) and dried over anhydrous Na2SC>4. The reaction mass was cooled to -5 °C to 5 °C and stirred for 1 h. The obtained solid was filtered and washed with ethyl acetate (2 vol) and dried under vacuum to afford the solid compound 3.Yield: 4.1 g, 37 %HPLC purity: 96.56 % |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | In N,N-dimethyl-formamide at 20℃; for 17h; | 3.3B [0428] (E)-N'-(9-((3aR,4R,6R,6aR)-6-(hydroxymethyl)-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)-9H-purin-6-yl)-N,N- dimethylformimidamide (M13) 2',3 -O-IsopropyHdeneadenosme (4.24 g 13,79 mmol, i equiv) was dissolved in 35 mL anhydrous DMF in a flame-dried 100 mL round botom flask. N,N-Dimethylformamide dimethyl acetal (8.22 g, 68.95 mmol, 5 equiv) was added and the reaction was allowed to stir at room temperature for 17 hr. The solvent was removed by rotary evaporation to afford the crude product as an off- white solid (4.98 g, 99%). The protected adenosine was used without further purification. |
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Environmental hazards | |
Code | Phrase |
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H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
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H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
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