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CAS No. : | 1145-80-8 | MDL No. : | MFCD00002662 |
Formula : | C11H13NO5 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | GNIDSOFZAKMQAO-VIFPVBQESA-N |
M.W : | 239.22 | Pubchem ID : | 100310 |
Synonyms : |
Z-Ser-OH
|
Num. heavy atoms : | 17 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.27 |
Num. rotatable bonds : | 7 |
Num. H-bond acceptors : | 5.0 |
Num. H-bond donors : | 3.0 |
Molar Refractivity : | 58.05 |
TPSA : | 95.86 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.49 cm/s |
Log Po/w (iLOGP) : | 1.52 |
Log Po/w (XLOGP3) : | 0.38 |
Log Po/w (WLOGP) : | 0.21 |
Log Po/w (MLOGP) : | 0.34 |
Log Po/w (SILICOS-IT) : | 0.2 |
Consensus Log Po/w : | 0.53 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -1.36 |
Solubility : | 10.4 mg/ml ; 0.0435 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.96 |
Solubility : | 2.63 mg/ml ; 0.011 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.8 |
Solubility : | 3.77 mg/ml ; 0.0158 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 2.64 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With potassium carbonate In N,N-dimethyl-formamide at 0 - 20℃; for 0.5 h; | Adapting the procedure of Chhabra et al.,4 to aflame-dried 250 mL round bottom flask containing Cbz-Serine-OH 8 (12.0 g, 50.0 mmol, 1.00 equiv) and K2CO3(7.60 g, 55.0 mmol, 1.10 equiv) in DMF (85 mL, 0.60 M) at 0 °C was added methyl iodide (6.20 mL, 100 mmol,2.00 equiv) over 30 minutes. The reaction was allowed to warm slowly to room temperature and stirred overnightThe reaction mixture was diluted with EtOAc (500 mL) and washed with a 1:4 mixture of saturated aqueousNaCl:H2O (2 x 100 mL). The combined aqueous washes were back extracted with EtOAc (2 x 150 mL). Thecombined organic extracts were washed sequentially with H2O (2 x 200 mL), saturated aqueous NaCl (2 x 200 mL),5percent aqueous (w/v) LiCl (2 x 200 mL), and again saturated aqueous NaCl (1 x 200 mL). The combined aqueouswashes were further back-extracted with Et2O (1 x 200 mL), and the combined organics were dried over Na2SO4,filtered, and concentrated in vacuo to afford the title compound as a viscous, colorless oil (13.0 g, 99percent) that wasused without further purification (Note: The crude material contained residual DMF). TLC: Rf = 0.17 (40percentEtOAc/hexanes; UV/KMnO4); 1H NMR (600 MHz, CDCl3) δ 7.40–7.30 (m, 5H), 5.79–5.49 (m, 1H), 5.13 (s, 2H),4.50–4.40 (m, 1H), 4.05–3.98 (m, 1H), 3.96–3.90 (m, 1H), 3.79 (s, 3H), 2.07 (t, J = 6.2 Hz, 1H); 13C NMR (151MHz, CDCl3) δ 171.0, 156.3, 136.2, 128.7, 128.4, 128.3, 67.4, 63.6, 56.2, 53.0. The spectra were in close agreementwith the literature.4 IR (FT-ATR, neat, cm-1): 3362, 2654, 1699, 1519, 1454, 1438, 1209, 1057, 976, 911, 750, 697;HRMS (ESI) m/z for [M+Na]+ C12H15NO5Na requires 276.0848, observed 276.0850; [α]D20 +8.3 (c = 1.0, CHCl3). |
50% | With potassium carbonate In N,N-dimethyl-formamide at 20℃; for 3 h; | General procedure: A solution of N-benzyloxycarbonyl-L-amino acid S5 (7.9 mmol) in DMF (20 ml) was added methyliodide (1.1 g, 7.9 mmol) and potassium carbonate (1.2 g, 8.7 mmol). The reaction mixture waskept at room temperature for 3 hours. The methylated products were purified by column chromatographyin the yields of 50percent (1.0 g, colorless-oil) for serine and 92percent (1.9 g, white-solid) for threonine.The methylated amino acid (4.0 mmol) in DMF (10 ml) was mixed with TBDPSCl (2.2 g, 7.9mmol), imidazole (810 mg, 11.9 mmol) and catalytic amount of DMAP. The reaction was processedat 45 °C for 7 hours. The desired products were purified by column chromatography in theyields of 90percent (1.7 g, colorless-oil) for serine and 90percent (1.8 g, white-solid) for threonine. The silylproduct (500 mg, 1.0 mmol) in DMF (1 ml) was reacted with 15percent NaOH (5 ml) for 2 hours. Thereaction mixture was quenching by 1 N HCl(aq) and 6 was extracted by ethyl acetate. The desiredamino acid 6 was obtained after removal of ethyl acetate in the quantitative yields (470 mg,white-solid for serine; 486 mg, colorless-oil for threonine). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
16.8 g | at 0 - 20℃; Inert atmosphere | To a slurry of L-serine (10.5 g, 100 mmol) in H2O (100 mL), NaHCO3 (21.0 g, 250 mmol), and THF (50 mL) were added successively at 0 °C with cooling of the reaction vessel in an ice-water bath. The mixture was stirred for 30 min, benzyl chloroformate (15.5 mL, 110 mmol) was added dropwise at 0 °C. The ice-water bath was then removed, and the mixture was stirred for 4 h at r.t. The resulting mixture was washed with Et2O (2 × 50 mL) and acidified to pH 2 with aq 3 M HCl. The obtained solution was extractedwith EtOAc (1 × 100 mL and 3 × 50 mL). The combined organicphase was washed with brine, dried (Na2SO4), filtered, and concentrated under reduced pressure. The residue was dissolved in MeOH (150 mL), and SOCl2 (8.5 mL, 117 mmol) was then added dropwise to the solution at 0 °C under an N2 atmosphere. The mixture wasstirred for 10 min at 0 °C, the ice-water bath was then removed, and the mixture was stirred overnight at r.t. The resulting solution wasthen concentrated under reduced pressure, dissolved in Et2O (150mL), washed with cold sat. NaHCO3, dried (Na2SO4), filtered, and concentrated under reduced pressure. The obtained crude material was purified by column chromatography (silica gel, hexane–EtOAc, 1:1 to 1:3) to give the product (16.8 g, 66 mmol, 66percent, 2 steps). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With dimethyl azodicarboxylate; triphenylphosphine In tetrahydrofuran; acetonitrile at -55℃; for 2 h; Inert atmosphere | Example 4; Standard Procedure for the Synthesis of Ddz-Dap(Boc-Me)-OH (Ddz-AA4, FIG. 2); Step 4-1. Z-Serine-β-lactone (AA4-2).; This intermediate was prepared in an analogous fashion to that described previously for the Boc derivative AA3-1. In a dry 250 mL 3-neck flask equipped with a mechanical stirrer under nitrogen atmosphere was added triphenylphosphine (4.5 g, 17.1 mmol, 1.1 eq.), followed by 100 mL of an anhydrous THF:CH3CN (1:9) solvent mixture. The mixture was stirred until a solution was obtained and then cooled to -55° C. (bath temperature) and dimethylazodicarboxylate (DMAD, 1.9 mL, 17.1 mmol, 1.1 eq) was added dropwise over 10 min. After completion of the addition, the mixture was stirred for 20 min, then a solution of Z-Ser-OH (AA4-1, 3.7 g, 15.5 mmol, 1.0 eq) in 50 mL of anhydrous THF:CH3CN (1:9) was added dropwise over 30 min. The reaction mixture was stirred at -55° C. for 1.5 h, then the cooling bath removed and the solution allowed to warm slowly to room temperature. Once the mixture reached room temperature, the solvent was evaporated under reduced pressure. The resulting yellow oil was purified by flash chromatography [gradient, hexanes/EtOAc, (80:20) to (60:40)] to give 2.5 g of AA4-2 as a white solid in 72percent yield. Purification of the crude oil is preferentially performed the same day to avoid decomposition. DCM can be added to help solubilize the residue.TLC (hexanes/EtOAc (60/40): Rf=0.55 (UV, CMA) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With triphenylphosphine In acetonitrile | a L-2-Amino-3-phenylaminoethylpropionic Acid 54.8 g (0.209 mol) of triphenylphosphine were suspended in 600 ml of acetonitrile and, with exclusion of moisture, cooled to -35° C. to -45° C. At this temperature, 36.4 g (0.209 mol) of diethyl azodicarboxylate were then added dropwise over a period of 50 min. The mixture was stirred at -35° C. for another 15 min. A solution of 50 g (0.209 mol) of N-benzyloxycarbonyl-L-serine in 500 ml of acetonitrile was added dropwise to this mixture, the temperature being kept below -35° C. The mixture was then allowed to react at 5° C. for another 12 h and warmed to RT. The reaction solution was freed from solvent under reduced pressure and the crude product was purified by medium pressure chromatography over silica gel (DCM/AcCN: 25/1). Removal of the solvent gave 20.8 g (yield 45percent) of pure N-benzyloxy-carbonyl-L-serine-β-lactone (see also Org. Synth. 1991 (70) 1ff.) in fine needles. Empirical formula C11H11NO4; M.W.=221.2; MS (M+H) 222.1. |
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