Structure of 141403-49-8
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 141403-49-8 |
Formula : | C21H27NO5S |
M.W : | 405.51 |
SMILES Code : | O=S(C1=CC=C(C)C=C1)(OC[C@@H](NC(OC(C)(C)C)=O)CC2=CC=CC=C2)=O |
MDL No. : | MFCD22571764 |
InChI Key : | RQWPOWPOCHOWOX-SFHVURJKSA-N |
Pubchem ID : | 11069512 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 28 |
Num. arom. heavy atoms | 12 |
Fraction Csp3 | 0.38 |
Num. rotatable bonds | 10 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 108.24 |
TPSA ? Topological Polar Surface Area: Calculated from |
90.08 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.7 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
4.3 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
4.92 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.59 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.25 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.95 |
Log S (ESOL):? ESOL: Topological method implemented from |
-4.72 |
Solubility | 0.00772 mg/ml ; 0.000019 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (Ali)? Ali: Topological method implemented from |
-5.9 |
Solubility | 0.000505 mg/ml ; 0.00000124 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-6.69 |
Solubility | 0.000082 mg/ml ; 0.000000202 mol/l |
Class? Solubility class: Log S scale |
Poorly soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
Yes |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
Yes |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.72 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<3.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.99 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With triethylamine; In dichloromethane; at 0 - 20℃; | S-Ztoophenylalaninol (1 g, 3.98 mmol) was dissolved in DCM. To this solution, triethylamine and />-toluenesulphonyl chloride were added slowly at 0 C. The reaction was then allowed to stir at room temperature overnight. After reaction completion, DCM was evaporated and the crude reaction mixture was purified using column chromatography. The pure product 13a was obtained as white fluffy solid in 78% yield (1.26g). The pure product 13b was obtained as white solid in 81% yield |
38% | With triethylamine; In dichloromethane; at 20℃; for 3.0h; | Boc- L-phenylalaninol (1.01 g, 4.0 mmol, 1.0 equiv.) and/7-toluenesulfonyl chloride (0.92 g, 4.8 mmol, 1.2 equiv.) were dissolved in dichloromethane (20 mL) and to the solution was added triethylamine (0.84 mL, 6.0 mmol, 1.5 equiv.) at room temperature. The resulting mixture was stirred for 3h, and then the reaction was quenched with saturated ammonium chloride solution. The phases were separated and the water layer was extracted with ether twice. The combined organic phase was washed once with brine, dried over anhydrous sodium sulfate and concentrated in vacuo. The residue was chromatographed on silica gel (0- 20 % ethyl acetate in hexane) to afford 231 as a white solid (0.61 g, 38%). Purity 99 % (HPLC). |
38% | With triethylamine; In dichloromethane; at 20℃; for 3.0h; | Boc- L-phenylalaninol (1.01 g, 4.0 mmol, 1.0 equiv.) and />toluenesulfonyl chloride (0.92 g, 4.8 mmol, 1.2 equiv.) were dissolved in dichloromethane (20 mL) and to the solution was added triethylamine (0.84 mL, 6.0 mmol, 1.5 equiv.) at room temperature. The resulting mixture was stirred for 3h, and then the reaction was quenched with saturated ammonium chloride solution. The phases were separated and the water layer was extracted with ether twice. The combined organic phase was washed once with brine, dried over anhydrous sodium sulfate and concentrated in vacuo. The residue was chromatographed on silica gel (0- 20 % ethyl acetate in hexane) to afford 231 as a white solid (0.61 g, 38%). Purity 99 % (HPLC). |
38% | With triethylamine; In dichloromethane; at 20℃; for 3.0h; | 10250] Boc-E-phenylalaninol (1.01 g, 4.0 mmol, 1.0 equiv.) and p-toluenesulfonyl chloride (0.92 g, 4.8 mmol, 1.2 equiv.) were dissolved in dichloromethane (20 mE) and to the solution was added triethylamine (0.84 mE, 6.0 mmol, 1.5 equiv.) at room temperature. The resulting mixture was stirred for 3 h, and then the reaction was quenched with saturated ammonium chloride solution. The phases were separated and the water layer was extracted with ether twice. The combined organic phase was washed once with brine, dried over anhydrous sodium sulfate and concentrated in vacuo. The residue was chromatographed on silica gel (0-20% ethyl acetate in hexane) to afford 231 as a white solid (0.61 g, 38%). Purity 99% (HPEC). |
Synthesis of Synthesis of Toluene-4-sulfonicacid(S)-2-tert-butoxycarbonylamino-3- phenyl-propyl ester [A014] To a solution of Boc-L-phenylalaninol (0.5 g, 1.989 mmol) in DCM (10 mL) at 0C was added triethylamine (0.83 mL, 5.968 mmol). The reaction mixture was stirred at this temperature for 5minutes. para-Toluenesufonyl chloride (2.188 mmol, 0.42 g) was added dropwise as a solution in DCM (5 mL), and the reaction mixture was allowed to warm up to room temperature slowly. The reaction mixture stirred at room temperature for 4 hours. The reaction mixture was diluted with DCM (20 mL) and washed with water. Layers separated and the organic layer dried over anhydrous magnesium sulphate. The DCM was evaporated to dryness under reduced pressure to afford the title compound [A014] as a clear oil (0.8g). No further purification was carried out and the crude product was used immediately in the next step. | ||
With dmap; triethylamine; In dichloromethane; at 0 - 25℃; for 3.0h; | General procedure: To a stirred solution of N-Boc protected amino alcohol 9 (0.5mg, 1.98mmol) in CH2Cl2 (5mL) were added dry triethylamine (0.3mL, 2.37mmol) and p-toluenesulfonyl chloride (0.452g, 2.37mmol) in the presence of a catalytic amount of 4-dimethylaminopyridine (0.024g,10mol%) at 0C. The reaction mixture was stirred at 25C for 3h and then quenched by addition of 10% NaHCO3. The aqueous layer was extracted with CH2Cl2 (3×20mL) and the combined organic layers were dried over anhydrous Na2SO4, and concentrated to give the crude tosylate, which was then dissolved in dry THF (5mL), and added dropwise to a suspension of LiAlH4 (0.225g, 3mmol) in dry THF (10mL). The mixture was refluxed for 4h and then cooled to 0C after which the excess LiAlH4 was quenched by the addition of EtOAc. It was then treated with aq. 20% NaOH (0.5mL). The white precipitate which formed was filtered off, and the residue was washed with EtOAc (3×10mL). The combined EtOAc layers were dried over anhydrous Na2SO4, and the solvent was evaporated under reduced pressure. The crude product was purified by column chromatography over silica gel using CHCl3 as the eluent to afford the corresponding pure N-methyl amine 11 | |
With dmap; triethylamine; In dichloromethane; | General procedure: To a solution of intermediates 10a-g (1 equiv) in dichloromethane, TsCl (1.2 equiv), DMAP (0.2 equiv) and trimethylamine(3 equiv) were added. The solutionwas stirred at 20 C.The reaction was followed by TLC and quenched with water. Theorganic phase was washed with citric acid (1 N) and saturatedNaHCO3 then dried over Na2SO4 and filtered. The filtrate wasconcentrated and purified by a silica column to afford compounds11a-g as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.192 g | With lithium aluminium tetrahydride; In tetrahydrofuran; for 4.0h;Reflux; | General procedure: To a stirred solution of N-Boc protected amino alcohol 9 (0.5mg, 1.98mmol) in CH2Cl2 (5mL) were added dry triethylamine (0.3mL, 2.37mmol) and p-toluenesulfonyl chloride (0.452g, 2.37mmol) in the presence of a catalytic amount of 4-dimethylaminopyridine (0.024g,10mol%) at 0C. The reaction mixture was stirred at 25C for 3h and then quenched by addition of 10% NaHCO3. The aqueous layer was extracted with CH2Cl2 (3×20mL) and the combined organic layers were dried over anhydrous Na2SO4, and concentrated to give the crude tosylate, which was then dissolved in dry THF (5mL), and added dropwise to a suspension of LiAlH4 (0.225g, 3mmol) in dry THF (10mL). The mixture was refluxed for 4h and then cooled to 0C after which the excess LiAlH4 was quenched by the addition of EtOAc. It was then treated with aq. 20% NaOH (0.5mL). The white precipitate which formed was filtered off, and the residue was washed with EtOAc (3×10mL). The combined EtOAc layers were dried over anhydrous Na2SO4, and the solvent was evaporated under reduced pressure. The crude product was purified by column chromatography over silica gel using CHCl3 as the eluent to afford the corresponding pure N-methyl amine 11. Yield: 0.192g, 65%; [alpha]D25=-10.8 (c 4.2, EtOH); {lit.20 [alpha]D25=-10.9 (c 4.2, EtOH)}; IR (CHCl3, cm-1) 3274, 2917, 2839, 1614,1438; 1H NMR (200MHz, CDCl3): delta 7.15-7.28 (m, 5H), 2.63-2.82 (m, 3H), 2.4 (s, 3H), 1.67 (br s, 1H), 1.08 (d, J=5.9Hz, 3H); 13C NMR (50MHz, CDCl3): delta 139.2, 129.2, 128.4, 126.2, 56.3, 43.3, 33.8, 13.6; Anal. Calcd for C10H15N requires C 80.48; H 10.13; N 9.39%; found C 80.50; H 10.11; N 9.35%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
49% | With sodium azide; In N,N-dimethyl-formamide; at 80℃; for 3.0h; | 231 (261 mg, 0.64 mmol, 1.0 equiv.) was dissolved in DMF (1.5 mL), and sodium azide (84 mg, 1.28 mmol, 2.0 equiv.) was added. The reaction mixture was heated to 80 0C and stirred for 3 h. After cooling to room temperature, the solution was partitioned between water (5 mL) and ethyl acetate (10 mL). The organic phase was washed with IN HCl, 5% NaHCO3, and water, dried over anhydrous sodium sulfate and then concentrated in vacuo. The residue was chromatographed on silica gel to afford 232 as a white solid (87 mg, 49%). Purity 99% (HPLC). 232 (87 mg, 0.31 mmol) dissolved in ethyl acetate (3 mL) was hydrogenated at atmospheric pressure for 1 h in the presence of 10% Pd/C (20 mg). The catalyst was removed by filtration through Celite, and the filtrate was concentrated in vacuo to give 233, which was used directly in the next step. |
49% | With sodium azide; In N,N-dimethyl-formamide; at 80℃; for 3.0h; | 231 (261 mg, 0.64 mmol, 1.0 equiv.) was dissolved in DMF (1.5 mL), and sodium azide (84 mg, 1.28 mmol, 2.0 equiv.) was added. The reaction mixture was heated to 80 0C and stirred for 3 h. After cooling to room temperature, the solution was partitioned between water (5 mL) and ethyl acetate (10 mL). The organic phase was washed with IN HCl, 5% NaHCO3, and water, dried over anhydrous sodium sulfate and then concentrated in vacuo. The residue was chromatographed on silica gel to afford 232 as a white solid (87 mg, 49%). Purity 99% (HPLC). |
49% | With sodium azide; In N,N-dimethyl-formamide; at 80℃; for 3.0h; | 10251] 231 (261 mg, 0.64 mmol, 1.0 equiv.) was dissolved in DMF (1.5 mE), and sodium azide (84 mg, 1.28 mmol, 2.0 equiv.) was added. The reaction mixture was heated to 80 C. and stirred for 3 h. Afier cooling to room temperature, the solution was partitioned between water (5 mE) and ethyl acetate (10 mE). The organic phase was washed with iN HC1, 5% NaHCO,, and water, dried over anhydrous sodium sulfate and then concentrated in vacuo. The residue was chromatographed on silica gel to afford 232 as a white solid (87 mg, 49%). Purity 99% (HPEC). 232 (87 mg, 0.31 mmol) dissolved in ethyl acetate (3 mE) was hydrogenated at atmospheric pressure for 1 h in the presence of 10% PdC (20 mg). The catalyst was removed by filtration through Celite, and the filtrate was concentrated in vacuo to give 233, which was used directly in the next step. |
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