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CAS No. : | 15862-34-7 | MDL No. : | |
Formula : | - | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | WXRLCVUDLFFTFF-UHFFFAOYSA-N |
M.W : | - | Pubchem ID : | 85147 |
Synonyms : |
|
Num. heavy atoms : | 11 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 43.58 |
TPSA : | 78.68 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.17 cm/s |
Log Po/w (iLOGP) : | 0.75 |
Log Po/w (XLOGP3) : | 0.65 |
Log Po/w (WLOGP) : | 1.05 |
Log Po/w (MLOGP) : | -0.06 |
Log Po/w (SILICOS-IT) : | 0.13 |
Consensus Log Po/w : | 0.5 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.94 |
Solubility : | 2.49 mg/ml ; 0.0114 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.88 |
Solubility : | 2.9 mg/ml ; 0.0132 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -2.17 |
Solubility : | 1.47 mg/ml ; 0.00673 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 2.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 2.1 |
Signal Word: | Class: | ||
Precautionary Statements: | UN#: | ||
Hazard Statements: | Packing Group: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With tin(ll) chloride In ethyl acetate at 50℃; for 20 h; | A mixture of 5-bromo-3-nitropyridin-2-ol (1.26 g, 4.6 mmol) and tin chloride dihydrate (3.91 g, 17.3 mmol) in ethyl acetate (19.3 mL) was heated at 50° C. for 20 h. The reaction mixture was cooled to room temperature and diluted with ethyl acetate (100 mL) and washed with brine. The aqueous layer was separated and extracted with ethyl acetate (5*50 mL). The combined organic layers were dried with sodium sulfate, filtered and concentrated in vacuo to give a black solid 580 mg (53percent), which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | Stage #1: for 3 h; Heating / reflux Stage #2: With sodium hydrogencarbonate In diethyl ether |
Step B. 5-Bromo-2-chloro-3-nitropyridine A mixture of 5-bromo-3-nitropyridin-2(1H)-one (Step A, 2.5 g, 10.4 mmol), phosphoryl chloride (25 mL) and N,N-dimethylformamide (2.5 mL) was stirred under reflux for 3 h. After removal of solvent, the residue was dissolved in water (20 mL) and diethylether (20 mL) at 0° C. and the solution was separated. The organic layer was washed with saturated sodium hydrogen carbonate, dried over sodium sulfate and concentrated to afford the title compound (2.5 g, 89percent) as a pale yellow solid. 1H-NMR (CDCl3) δ: 8.70 (d, J=1.7 Hz, 1H), 8.37 (d, J=1.7 Hz, 1H). |
89% | With trichlorophosphate In N,N-dimethyl-formamide for 2 h; Heating / reflux | Step B. 5-Bromo-2-chloro-3-nitropyridineA mixture of 5-bromo-3-nitropyridin-2(1 H)-one (Step A, 7.2 g, 32.9 mmol), phosphoryl chloride(72 mL) and λ/,λ/-dimethylformamide (7.2 mL) was stirred under reflux for 2 h. After removal of solvent, the residue was dissolved in water (100 mL) and ethyl acetate(30 mL) and the solution was separated.The organic layer was washed with saturated sodium hydrogen carbonate, dried over sodium sulfate and concentrated to afford the title compound (6.97 g, 89percent) as a pale yellow solid.1H-NMR (CDCI3) δ: 8.70 (d, J= 1.7 Hz, 1 H), 8.37 (d, J= 1.7 Hz, 1 H). |
85% | With trichlorophosphate In N,N-dimethyl-formamide for 2 h; Reflux | To a solution of 5-bromo-3-nitropyridin-2(1H)-one (4.62 g, 21.10 mmol) in POCl3 (46.2 ml) was added DMF (4.62 ml, 59.7 mmol) at room temperature. The mixture was refluxed for 2 hours, and then cooled to room temperature and concentrated in vacuo. The residue was treated with saturated aq. NaHCO3 and extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by column chromatography on SiO2 (Hex:EtOAc=3:1) to give 5-bromo-2-chloro-3-nitropyridine (4.24 g, 85percent) as a yellow solid. 1H-NMR (CDCl3, Varian 400 MHz) δ 8.37 (1H, d, J=2.4 Hz), 8.70 (1H, d, J=2.0 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With thionyl chloride In N,N-dimethyl-formamide for 1 h; Reflux | N,N'-dimethylformamide (3 mL) was added to a mixture of 5-bromo-2-hydroxy-3-nitropyridine (16.54 g, 80 mmol) and thionyl chloride (43 mL) and the mixture was stirred and heated to reflux. After 1 hour, the solution was cooled and the solvent was evaporated. The mixture was co-evaporated with toluene to give a dark solid. Purification by flash chromatography (10:1 hexanes/ethyl acetate) gave the title compound (14.63 g, 82percent) as a yellow solid. 1H-NMR δ (CDCl3): 8.38 (d, J=3.0 Hz, 1H), 8.70 (d, J=3.0 Hz, 1H). |
82% | With thionyl chloride In N,N-dimethyl-formamide for 1 h; Reflux | N,N'-dimethylformamide (3 mL) was added to a mixture of 5-bromo-2-hydroxy-3-nitropyridine (16.54 g, 80 mmol) and thionyl chloride (43 mL) and the mixture was stirred and heated to reflux. After 1 hour, the solution was cooled and the solvent was evaporated. The mixture was co-evaporated with toluene to give a dark solid. Purification by flash chromatography (10:1 hexanes/ethyl acetate) gave the title compound (14.63 g, 82percent) as a yellow solid. 1H-NMR δ (CDCl3): 8.38 (d, J=3.0 Hz, 1H), 8.70 (d, J=3.0 Hz, 1H). |
81% | With trichlorophosphate In N,N-dimethyl-formamide for 3 h; Reflux | A mixture of 5-bromo-2-hydroxy-3-nitropyridine (14) (28.8 g, 131.5 mmol), POCl3 (288 mL) and anhydrous DMF (30 mL) was stirred and heated at reflux for 3 h. After removal of POCl3, the residue was poured into ice water and extracted with EtOAc. The combined organic layers were washed with saturated aqueous NaHCO3, brine, dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude product was purified by silica gel column chromatography (4:1 hexanes/EtOAc) to afford 15 (25.4 g, 81percent) as a pale yellow solid, mp 66-67 °C (lit32 68 °C). 1H NMR (CDCl3) δ 8.70 (d, J = 2.0 Hz, 1H, Ar-H), 8.37 (d, J = 2.5 Hz, 1H, Ar-H). |
81% | With trichlorophosphate In N,N-dimethyl-formamide for 12 h; Inert atmosphere; Reflux | General procedure: 2-Hydroxy-3-nitropyridine 5 (0.015 mol) was suspended in POCl3 (15 mL). Anhydrous DMF (2 mL) was added and the resulting mixture was heated at reflux for 12 h. The excess of POCl3 was removed by distillation, the residue was taken up in a mixture of DCM with ice and the mixture was stirred for 30 min. The organic layer was separated, washed with water (3 x), dried over anhydrous Na2SO4, filtered and concentrated to yield analytically pure product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With phosphorus(V) oxybromide In N,N-dimethyl-formamide; toluene at 90℃; for 16 h; | Intermediate 12; N-[(R)-1-(5-Bromo-3-fluoro-pyridin-2-yl)-ethyl]-acetamide Step A: 2,5-Dibromo-3-nitro-pyridine To a suspension 5-bromo-3-nitro-pyridin-2-ol (20 g, 91.32 mmol) in toluene (100 ml) was added DMF (0.7 ml, 9.13 mmol) and the mixture was heated to 90° C. (the reaction mixture was protected from light). A solution of POBr3 (31.41 g, 109.51 mmol) in toluene (40 ml) was added dropwise at 90° C. and the reaction mixture was stirred at that temperature for 16 h. The mixture was allowed to cool to room temperature and toluene (50 ml) and water (50 ml) were added. The organic layer was separated, washed successively with aqueous 1N NaOH (60 ml), water (60 ml) and brine (30 ml), dried with Na2SO4 and evaporated obtain the title compound as yellow solid (25.2 g, 97percent). |
97% | Stage #1: With phosphorus(V) oxybromide In N,N-dimethyl-formamide; toluene at 90℃; for 16 h; Darkness Stage #2: With sodium hydroxide In water; N,N-dimethyl-formamide; toluene |
Step A: 2,5-Dibromo-3-nitro-pyridineTo a suspension 5-bromo-3-nitro-pyridin-2-ol (20 g, 91.32 mmol) in toluene (100 ml) was added DMF (0.7 ml, 9.13 mmol) and the mixture was heated to 90°C (the reaction mixture was protected from light). A solution of POBr3 (31.41 g,109.51 mmol) in toluene (40 ml) was added dropwise at 90°C and the reaction mixture was stirred at that temperature for 16 h. The mixture was allowed to cool to room temperature and toluene (50 ml) and water (50 ml) were added. The organic layer was separated, washed successively with aqueous IN NaOH (60 ml), water (60 ml) and brine (30 ml), dried with Na2S04 and evaporated obtain the title compound as yellow solid (25.2 g, 97percent). |
80.03% | With phosphorus tribromide In N,N-dimethyl-formamide at 120℃; for 0.333333 h; | To a solution of 5-Bromo-3-nitro-pyridin-2-ol (10.0 g, 45.66 mmol) in 70 ml of toluene and 7 ml of DMF was added PBr3 (6.60 ml, 68.49 mmol) and the reaction mixture was heated at 12O0C for 20 min under nitrogen atmosphere. After the completion of the reaction mixture (TLC monitoring), water (100 mL) was added and extracted with ethyl acetate (3 x 200 mL). The combined organics was washed with water, brine, dried (Na2SO4), filtered and concentrated to get the desired product (10.30 g, 80.03percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With pyridine; phosphorus(V) oxybromide In toluene at 90℃; for 15.5 h; | Example 15; 4-{7- [(2,3-dihydro [1 ,4] dioxino [2,3-c] pyridin-7-ylmethyl)amino] -5- methyl-6-oxo-5,6,7,8-tetrahydro-l,5-naphthyridin-3-yl}-6-(methyloxy)pyrido[2,3- b]pyrazin-3(4H)-one; <n="74"/>(a) 2,5-Dibromo-3-nitropyridine; 5-Bromo-3-nitro-2(lH)-pyridinone (5g, 22.83 mmol) was suspended in toluene (50 ml). DMF (0.177 ml, 2.283 mmol) was added and the mixture was protected from light. A solution of phoshorous oxybromide (7.85 g, 27.4 mmol) in toluene (50 ml) was added to the pyridine mixture over 1.5h at 90 0C. The reaction mixture was heated at 90 0C for 14h, cooled down and extracted with water. The organic layer was washed with IN NaOH and brine and dried over MgSOφ The solvent was removed to give title compound (6.45 g, 22.88 mmol, 100 percent yield) as yellow solid. MS (ES+) m/z 282(MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With sulfuric acid; sodium nitrite In water at 0 - 20℃; Inert atmosphere | General procedure: 2-Amino-3-nitropyridine 8 (0.015 mol) was dissolved, on cooling with ice, in 70percent sulfuric acid and treated with a solution of NaNO2 (1.24 g) in water (8 mL), which was added dropwise so as to maintain the reaction temperature in 0-5 °C range. The reaction was allowed to warm up to rt and stirred at that temperature for 3 h. The precipitate formed was isolated by filtration, washed with water and dried at 60 °C overnight. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With silver carbonate In chloroform at 20℃; for 48 h; | Example 4N-(2-Methyl-3-(5-(5-(4-methylpiperazin-l-yl)pyridine-2-ylamino)-6-oxo-l,6- dihydropyridin-3-yl)phenyl)-4,5,6,7-tetrahydrobenzo[Z>]thiophene-2- carboxamide (19); 5-Bromo-2-methoxy-3-nitropyridine (15)[00197] In a 1 L, round-bottomed, single-necked flask equipped with a magnetic stirring bar was placed 5-bromo-3-nitropyridin-2-ol (50.0 g, 0.23 mol) in CHCl3 (500 mL) under nitrogen in the dark (wrapped in aluminum foil.) To this solution was added Ag2CO3 (75.5 g, 0.28 mol) and MeI (142.0 mL, 2.3 mol). After the mixture was stirred for 48 h at room temperature, it was filtered through a pad of Celite, washed with CH2Cl2, and concentrated. The crude mixture was purified by column chromatography (EtOAc:Hexane, 1:4) to give 24.0 g (45percent) of 5-bromo-2- methoxy-3-nitropyridine (15) as a solid. |
34% | With silver carbonate In methylene chloride at 20℃; for 48 h; Inert atmosphere; Darkness | Method B: to a suspension of 14 (5.0 g, 22.8 mmol) in anhydrous CH3Cl (50 mL) under N2 in the dark (wrapped in aluminum foil) was added Ag2CO3 (7.55 g, 28.0 mmol), followed by CH3I (14.2 mL, 230.0 mmol). After stirring at rt for 48 h, the reaction mixture was filtered through a pad of Celite, washed with abundant CH2Cl2, and concentrated in vacuo. The crude product was purified by silica gel column chromatography (10:1 hexanes/EtOAc) to afford 16 (1.86 g, 34percent) as a pale yellow solid. The analytical data were same as aforementioned. |
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