Structure of 910543-72-5
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Yangfeng Li ; Zhengnan Shen ; Kiira Ratia ; Jiong Zhao ; Fei Huang ; Oleksii Dubrovyskyii , et al.
Abstract: The bromodomain and extra-terminal domain (BET) proteins are epigenetic readers, regulating transcription via two highly homologous tandem bromodomains, BD1 and BD2. Clinical development of nonselective pan-BD BET inhibitors has been challenging, partly due to dose-limiting side effects such as thrombocytopenia. This has prompted the push for domain-selective BET inhibitors to achieve a more favorable therapeutic window. We report a structure-guided drug design campaign that led to the development of a potent BD1-selective BET inhibitor, 33 (XL-126), with a Kd of 8.9 nM and 185-fold BD1/BD2 selectivity. The high selectivity was first assayed by SPR, validated by a secondary time-resolved fluorescence energy transfer assay, and further corroborated by BROMOscan (∼57–373 fold selectivity). The cocrystal of 33 with BRD4 BD1 and BD2 demonstrates the source of selectivity: repulsion with His437 and lost binding with the leucine clamp. Notably, the BD1 selectivity of BET inhibitor 33 leads to both the preservation of platelets and potent anti-inflammatory efficacy.
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Purchased from AmBeed: 910543-72-5 ; 56-84-8 ; 71-00-1 ; 944937-53-5 ; 1793016-39-3 ; 50618-82-1
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CAS No. : | 910543-72-5 |
Formula : | C6H7BrN2O |
M.W : | 203.04 |
SMILES Code : | O=C1C(N)=CC(Br)=CN1C |
MDL No. : | MFCD09835082 |
InChI Key : | KRUDZWOELKQDJW-UHFFFAOYSA-N |
Pubchem ID : | 52911268 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 44.07 |
TPSA ? Topological Polar Surface Area: Calculated from |
48.02 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.6 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.33 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.74 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.76 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.87 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.86 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.75 |
Solubility | 3.6 mg/ml ; 0.0178 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.9 |
Solubility | 25.4 mg/ml ; 0.125 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.99 |
Solubility | 2.06 mg/ml ; 0.0102 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.3 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.86 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | Example 2N-{3-[5-(4-Amino-pyridin-2-ylamino)-l-methyl-6-oxo-l,6-dihydro-pyridin-3-yl]- 2-methyl-phenyl}-4-ter/-butyl-benzamide (7); 3-Amino-5-bromo-l-methyl-lH-pyridin-2-one (4)[00186] A 48-mL sealed tube equipped with a magnetic stirring bar was charged with benzophenone imine (0.43 g, 2.4 mmol), 3,5-dibromo-l-methyl-lH- pyridin-2-one (1) (0.51 g, 2.0 mmol), Pd(OAc)2 (0.025 g, 0.040 mmol), rac-BINAP (0.082 g, 0.13 mmol), and Cs2CO3 (0.92 g, 2.8 mmol) in dioxane (15 mL). After the mixture was degassed for 15 min., it was heated at 95 0C for 16 h. Then, the reaction mixture was cooled to room temperature and poured into H2O (10 mL). To this was added dichloromethane and the layers were separated. The aqueous phase was extracted with dichloromethane (3 x 10 mL), and the combined organic extracts were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude product was dissolved in 1 N HCl/MeOH (3 mL) and stirred for 1 h at room temperature. Then, to the reaction mixture was added sat. NaHCO3 (10 mL) and dichloromethane (10 mL), and the phases were separated. The aqueous layer was extracted with dichloromethane, and the combined organic layers were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude mixture was purified by column chromatography, gradient 0-10 % MeOH in dichloromethane/ether (1/1), to afford 0.22 g (54 %) of 3-amino-5-bromo-l-methyl- lH-pyridin-2-one (4) as a solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In 1,2-dimethoxyethane; water; at 170℃; for 0.5h;Microwave irradiation; | A mixture of 46 (0.248 g, 1.22 mmol, CASRN 910543-72-5), A-6 (0.574 g, 1.46 mmol), Na2CO3 (0.388 g, 3.66 mmol), and Pd(0)(PPh3)4 (0.141 g, 0.122 mmol) in DME (10 mL) and H2O (5 mL) was stirred and heated at 170 C. for 30 min in a microwave synthesizer. The mixture was partitioned between EtOAc (100 mL) and H2O (100 mL). The aqueous layer was extracted with two 100 mL portions of EtOAc. The combined organic layers were dried (MgSO4), filtered and concentrated. The crude product was purified by SiO2 chromatography eluting with a MeOH/DCM gradient (0 to 4% MeOH) to afford 0.341 g (72%) of 48 as a yellow solid. The material was not completely pure but was used as is in the next step. |
68% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In 1,2-dimethoxyethane; water; at 95℃; for 16.25h; | N-[3-(5-Amino-l-methyl-6-oxo-l,6-dihydro-pyridin-3-yl)-2-methyl-phenyl]-4- terf-butyl-benzamide (5); <n="68"/>[00187] A 48-mL sealed tube equipped with a magnetic stirring bar was charged with 3-amino-5-bromo-l -methyl- lH-pyridin-2-one (4) (0.10 g, 0.50 mmol), 4-tert-butyl-iV-[2-methyl-3-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan-2-yl)-phenyl]- benzamide (0.24 g, 0.70 mmol), and Pd(PPh3)4 (0.030 g, 0.025 mmol) in DME (10 mL) and IN Na2CO3 (5 mL). After the mixture was degassed for 15 min., it was heated at 95 0C for 16 h. Then, the reaction mixture was cooled to room temperature and poured into H2O (10 mL). To this was added dichloromethane and the phases were separated. The aqueous layer was extracted with dichloromethane, and the combined organic layers were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude mixture was purified by column chromatography, gradient 0-10 % MeOH in dichloromethane/ether (1/1), to afford 0.14 g (68 %) of iV-[3-(5-amino-l-methyl-6-oxo-l,6-dihydro-pyridin-3-yl)-2-methyl- phenyl]-4-te/t-butyl-benzamide (5) as a solid. |
68% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In 1,2-dimethoxyethane; water; at 95℃; for 16h; | N-[3-(5-Amino-1-methyl-6-oxo-1,6-dihydro-pyridin-3-yl)-2-methyl-phenyl]-4-tert-butyl-benzamide (3) A 48-mL seal tube equipped with a magnetic stirring bar was charged with <strong>[910543-72-5]3-amino-5-bromo-1-methyl-1H-pyridin-2-one</strong> (2) (0.10 g, 0.50 mmol), 4-tert-butyl-N-[2-methyl-3-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-phenyl]-benzamide (0.24 g, 0.70 mmol), and Pd(PPh3)4 (0.030 g, 0.025 mmol) in DME (10 mL) and 1N Na2CO3 (5 mL). After the mixture was degassed for 15 min., it was heated at 95 C. for 16 h. Then, the reaction mixture was cooled to room temperature and poured into H2O (10 mL). To this was added dichloromethane and the phases were separated. The aqueous layer was extracted with dichloromethane, and the combined organic layers were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude mixture was purified by column chromatography, gradient 0-10% MeOH in dichloromethane/ether (1/1), to afford 0.14 g (68%) of N-[3-(5-amino-1-methyl-6-oxo-1,6-dihydro-pyridin-3-yl)-2-methyl-phenyl]-4-tert-butyl-benzamide (3) as a solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In tetrahydrofuran; toluene; at 0℃; for 1h; | Triethylamine (21 muL, 0.15 mmol) was added to a solution of 3-amino-5-bromo-l- methylpyridin-2(lH)-one (30.0 mg, 0.15 mmol) and phosgene (20% wt. in toluene; 16.0 muL, 0.15 mmol) in tetrahydrofuran (1 mL) at 0 0C. After 1 h, l-piperidin-4-yl-l,3-dihydro-2H-imidazo[4,5-delta]pyridin-2- one (32 mg, 0.15 mmol) and triethylamine (62 muL, 0.44 mmol) were sequentially added. The reaction mixture was allowed to warm to ambient temperature. After 18 h, the reaction mixture was filtered and concentrated. Purification by reverse phase EtaPLC (C- 18, 95% water/ acetonitrile ? 5% water/ acetonitrile with 0.1% trifluoroacetic acid) gave the title compound (26 mg). MS 447.1 (M). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | 3-Amino-5-bromo-1-methylpyridin-2-one (42); A 1-L three-neck round-bottomed flask equipped with a mechanical stirrer and reflux condenser was purged with nitrogen and charged with 41 (21.7 g, 93.3 mmol), ethanol (305 mL), iron powder (-325 mesh, 52.1 g, 933 mmol) and 2N hydrochloric acid (50 mL, 100 mmol), and the mixture was heated for 2 h at 60 C. After this time, the reaction was cooled to room temperature, and potassium carbonate was added to pH 8 as determined by a pH paper. The resulting suspension was filtered and the filter cake washed with ethanol (4×100 mL). The filtrate was concentrated under reduced pressure to yield a brown solid. This solid was purified by column chromatography on silica gel to afford 42 in 77% yield (14.5 g) as an off-white powder: mp 104-105 C.; 1H NMR (500 MHz, DMSO-d6) delta 7.15 (d, 1H, J=2.5 Hz), 6.46 (d, 1H, J=2.5 Hz), 5.45 (bs, 2H), 3.40 (s, 3H); MS (ESI+) m/z 203 (M+H). | |
34% | With iron; ammonium chloride; In ethanol; water-d2; at 95℃; for 3h;Inert atmosphere; | Iron powder (1 g, 18 mmol, 4.2 equivalents) and ammonium chloride (0.964 g, 18 mmol, 4.2 equivalents) were added to a solution of 1-methyl-3-nitro-5-bromo-pyridin-2-one (1 g, 4.3 mmol, 1 equivalent) in ethanol (8 mL) and water (6 mL) and stirred at 95 C for 3 hours. The solution was then filtered through a pad of celite and concentrated. The residue was then taken up in water (20 mL) and extracted with EtOAc (3 x 30 mL). The organic layers were dried over magnesium sulfate and concentrated to give a brown oil that solidified upon standing. The residue was purified by SCX to give the desired product as a dark red solid (300 mg, 34%). |
With tin(ll) chloride; In N,N-dimethyl-formamide; at 80℃; for 1.5h; | Tin(?) chloride dihydrate (53.3 g, 236 mmol) was added to a solution of 5-bromo-l- methyl-3-nitropyridin-2(lH)-one (11.0 g, 47.2 mmol) in ethyl acetate (400 mL) at 80 0C. After 1.5 h, the reaction mixture was quenched with saturated sodium bicarbonate. The mixture was extracted with ethyl acetate (3x), and the combined organic extracts were washed with water, saturated brine, dried over sodium sulfate, filtered and concentrated. MS 203.1 (M). |
With iron; ammonium chloride; In ethanol; water; at 60℃; for 2h; | 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one C-12 Iron powder (21.6 g; 0.39 mol) is added to a suspension of 5-bromo-1-methyl-3-nitro-1H-pyridin-2-one H (18.0 g; 0.08 mol) in EtOH (120.0 mL) and saturated aqueous NH4Cl (60.0 mL) at 60 C. The reaction is stirred at 60 C. for 2 h. The reaction mixture is then filtered and the solid residue on the filter is washed with EtOAc. The filtrate is concentrated under reduced pressure and extracted with EtOAc (3*100.0 mL). The combined extracts are washed with brine, dried with Na2SO4, filtered and concentrated. The residue is purified by column chromatography to afford the desired compound. HPLC-MS: (M+H)+=203/205; tRet=1.248 min; method M11 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one (2) A 48-mL seal tube equipped with a magnetic stirring bar was charged with benzophenone imine (0.43 g, 2.4 mmol), 3,5-dibromo-1-methyl-1H-pyridin-2-one (1) (0.51 g, 2.0 mmol), Pd(OAc)2 (0.025 g, 0.040 mmol), rac-BINAP (0.082 g, 0.13 mmol), and Cs2CO3 (0.92 g, 2.8 mmol) in dioxane (15 mL). After the mixture was degassed for 15 min., it was heated at 95 C. for 16 h. Then, the reaction mixture was cooled to room temperature and poured into H2O (10 mL). To this was added dichloromethane and the layers were separated. The aqueous phase was extracted with dichloromethane (3*10 mL), and the combined organic extracts were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude product was dissolved in 1 N HCl/MeOH (3 mL) and stirred for 1 h at room temperature. Then, to the reaction mixture was added sat. NaHCO3 (10 mL) and dichloromethane (10 mL), and the phases were separated. The aqueous layer was extracted with dichloromethane, and the combined organic layers were washed with H2O (5 mL) and brine (5 mL), dried (Na2SO4), and concentrated. The crude mixture was purified by column chromatography, gradient 0-10% MeOH in dichloromethane/ether (1/1), to afford 0.22 g (54%) of 3-amino-5-bromo-1-methyl-1H-pyridin-2-one (2) as a solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | To a solution of 46 (0.5 g, 2.46 mmol), DIPEA (0.952 g; 7.38 mmol) and DCM (40 mL) cooled to 0 C. under a nitrogen atmosphere was added phosgene (1.8 mL, 3.69 mmol, 20% in toluene). The reaction mixture was stirred for 20 min then methylamine (12 mL, 24.6 mmol, 2M solution in THF) was added slowly. The mixture warmed to RT and stirred for 5 h. The product was filtered, washed with DCM and dried in vacuo to afford 0.8 g (99%, 80% pure) of 62 which was used in the following step without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydride; In N,N-dimethyl-formamide; at 20℃; for 18h; | To a 0 C. solution of 66 (14.00 g, 61.77 mmol) and 46 (12.54 g, 61.77 mmol DMF (160 mL) was added sodium hydride (95%, 3.12 g, 123.5 mmol). This solution was slowly warmed to RT, stirred for 18 h then poured into 1.3 L cold water. EtOAc (3mL) was added and the resulting precipitate was filtered, washed with water, and air dried for 3 d to afford 18.84 g (47.91 mmol) of 68: MS (ESI) 393.1 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;tris-(dibenzylideneacetone)dipalladium(0); In 1,4-dioxane; at 95℃; for 18h; | A heterogeneous mixture of 46 (0.1 g, 0.49 mmol), 158 (0.16 g, 1.5 eq), Pd2(dba)3 (32 mg, 0.07 eq), xantphos (31 mg, 0.1 eq), and Cs2CO3 (0.32 g, 2 eq) in dioxane (1.5 mL) was purged with argon. The mixture was sealed and heated for 18 h in a sand bath at 95 C. The cooled mixture was partitioned between EtOAc and H2O, concentrated, and purified on a preparative SiO2 plate developed with 6% MeOH/DCM to afford 39 mg of 160 as a dark green solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydride; In N,N-dimethyl-formamide; for 18h; | To a solution of (6-Chloro-pyridin-3-yl)-(4-methyl-piperazin-l-yl)-methanone (2.0Og, 7.46 mmol) in 10 mL dimethylformamide was added 3-Amino-5-bromo-l -methyl- lH-pyridin-2-one (1.8Og, 8.95mmol) and sodium hydiride (537mg, 22.4mmol). After stirring for 18 hours, this was quenched with water. This was extracted with ethylacetate. The ethylacetate layer was dired over anhydrous sodium sulfate, concentrated in vacuo, and purified by flash chromatography (gradient elution 0 to 5% methanol/DCM) to yield 5-Bromo-l-methyl-3-[5-(4-methyl- piperazine-l-carbonyl)-pyridin-2-ylamino]-lH-pyridin-2-one (900mg, 1.94mmol). MS (ESI) 406.0 (M+H)+. | |
With sodium hydride; In N,N-dimethyl-formamide; | To a solution of (6-Chloro-pyridin-3-yl)-(4-methyl-piperazin-1-yl)-methanone (2.00 g, 7.46 mmol) in 10 mL dimethylformamide was added 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one (1.80 g, 8.95 mmol) and sodium hydiride (537 mg, 22.4 mmol). After stirring for 18 hours, this was quenched with water. This was extracted with ethylacetate. The ethylacetate layer was dired over anhydrous sodium sulfate, concentrated in vacuo, and purified by flash chromatography (gradient elution 0 to 5% methanol/dichloromethane) to yield 5-Bromo-1-methyl-3-[5-(4-methyl-piperazine-1-carbonyl)-pyridin-2-ylamino]-1H-pyridin-2-one (900 mg, 1.94 mmol). MS (ESI) 406.0 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Phenyl chloroformate (2.32 mL, 3 equiv) in acetone (3 mL) is added dropwise to a suspension of potassium thiocyanate (1.79 g, 3 equiv) in acetone (12 mL) over 5 min. After stirring for 10 min, the slurry is heated to 60 C. for 10 min after which it is cooled to ambient temperature. To this slurry is added aminopyridone (1.25 g, 6.15 mmol) in acetone (5 mL) and the mixture is stirred overnight. The mixture is then filtered, washed with dichloromethane, concentrated in vacuo, and chromatographed (50% to 100% EtOAc/Hexanes) to give slightly impure bromo phenyl carbamate (1.80 g, ~77%) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydrogencarbonate; In chloroform; water; | Preparation of 1-(5-bromo-1-methyl-2-oxo-1,2-dihydro-pyridin-3-yl)-3-(2-hydroxy-ethyl)-thiourea To a solution of 5-bromo-3-amino-1-methyl-2-pyridone (500 mg, 2.46 mmol) in chloroform (12 mL) was added a solution of saturated aqueous sodium bicarbonate (12 mL). To the vigorously stirred mixture was added thiophosgene (0.2 mL, 2.7 mmol) via drop-wise addition. The mixture was stirred for 1 hour and then transferred to a separatory funnel. The chloroform phase was collected and the aqueous phase was back extracted with methylene chloride (10 mL). The organic phases were combined in a 100 mL round bottom flask. To the rapidly stirred solution was added ethanolamine (0.16 mL, 2.7 mmol) via slow drop-wise addition. The material was stirred for 1.5 hours and the precipitated product was collected by filtration. The solid was dried in a vacuum oven providing the desired product as a light white-yellow solid (515 mg). (M-H)-=304/306 m/e. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
49% | With potassium phosphate; XPhos;bis(dibenzylideneacetone)-palladium(0); In water; butan-1-ol; at 100 - 110℃; for 0.75h;Inert atmosphere of argon; | 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one (392 mg, 1.93 mmol) was placed into 13 ml n-butanol. To this mixture under argon was added: Pddba2 (55.2 mg, 0.096 mmol), XPhos (91.2 mg, 0.191 mmol), acetic acid 2-(6-dimethylamino-1-oxo-3,4-dihydro-1H-isoquinolin-2-yl)-6-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-benzyl ester (900 mg, 1.93 mmol), potassium phosphate (814 mg, 3.84 mmol) and 4 ml water. The mixture was heated under argon in a sealed flask for 45 minutes at 100-110 C. After cooling, the mixture was diluted with ethylacetate, washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was purified by column chromathography using 5% methanol in dichloromethylene to afford 450 mg of Acetic acid 245-amino-1-methyl-6-oxo-1,6-dihydro-pyridin-3-yl)-6-(6-dimethylamino-1-oxo-3,4-dihydro-1H-isoquinolin-2-yl)-benzyl ester (49% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | To a solution of 2-Bromo-5-(1-methyl-azetidin-3-yloxy)-pyridine (0.327 g, 1.32 mmol) and 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one (0.321 g, 1.58 mmol) in dioxane (5.5 mL) add Cs2CO3 (0.645 g, 1.98 mmol), xantphos (0.153 g, 0.264 mmol) and bubbled argon through reaction mixture for 15 min. Add Pd (OAc)2 (0.03 g, 0.132 mmol) in the end. The reaction was heated at 100 C. under argon for 3 h. TLC shows 2-Bromo-5-(1-methyl-azetidin-3-yloxy)-pyridine was gone. The reaction mixture was treated with water (30 mL) and extracted with dichloromethane (3*20 mL). Organic phase was concentrated and loaded onto silica gel column separation. Using 3-5% MeOH in DCM gave 5-bromo-1-methyl-3-[5-(1-methyl-azetidin-3-yloxy)-pyridin-2-ylamino]-1H-pyridin-2-one as green solid (200 mg, 40% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Combined in a sealable tube was 3-Amino-5-bromo-1-methyl-1H-pyridin-2-one (0.38 g, 1.9 mmol), 2-bromo-5-(tert-butyl-dimethyl-silanyloxy)-pyridine (0.54 g, 1.9 mmol), and Cs2CO3 (0.85 g, 2.6 mmol) in 5 mL of dry 1,4-dioxane. The mixture was bubbled with argon for 10 minutes. To the suspension was added Pd2(dba)3 (0.12 g, 0.13 mmol) and xantphos (0.15 g, 0.26 mmol). The vessel was sealed and heated over night at 85 C. The cooled mixture was filtered over celite, concentrated and purified on a prep plate with 1:1 ethyl acetate/hexanes to give 0.46 g (1.1 mmol) of the desired product as a light yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Combined in a sealable vial was <strong>[910543-72-5]3-amino-5-bromo-1-methyl-1H-pyridin-2-one</strong> (0.18 g, 0.86 mmol), tert-Butyl-{2-[4-iodo-2-(2-methoxy-ethoxy)-phenoxy]-ethoxy}-dimethyl-silane (0.47 g, 1.04 mmol), and Cs2CO3 (0.42 g, 1.3 mmol) in 10 mL of dry 1,4-dioxane. The mixture was bubbled with argon for 10 minutes. Added to this mixture was Pd(OAc)2 (19 mg, 0.09 mmol) and xantphos (10 mg, 0.17 mmol). The reaction was sealed and heated to 100 C. for 3 hrs. Material was filtered over celite, dry loaded onto granular silica, and chromatographed with a gradient of 30-75% ethyl acetate/hexanes to give 0.19 g (0.35 mmol) of the desired product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35.7% | With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; for 12h;Inert atmosphere; Heating; | 4.1.49 N-(5-Bromo-1-methyl-2-oxo-1,2-dihydropyridin-3-yl)-4-(4-methylpiperazin-1-yl)benzamide (12e) A solution of 4-(4-methylpiperazin-1-yl)benzoic acid (100 mg, 0.45 mmol), <strong>[910543-72-5]3-amino-5-bromo-1-methylpyridin-2(1H)-one</strong> (92 mg, 0.45 mmol), DIPEA (118 mg, 0.9 mmol) and HATU (349 mg, 0.9 mmol) in anhydrous DMF (10 mL) was degassed with nitrogen for 12 h at 90 C. After addition of water (10 mL) and extraction with EtOAc (30 mL), the organic phases were washed with saturated brine. The combined organic layer was dried over Na2SO4, and the solvent was removed in vacuo. The crude product was purified on a silica gel column using hexane/EtOAc (1:1, v/v) as eluent to afford compound 12e (65 mg, 35.7%) as a white solid. MS (ESI) m/z 406.1 [M+H]+; 1H NMR (400 MHz, CDCl3): delta 9.12 (s, 1H), 8.67 (d, J = 2.48 Hz, 1H), 7.84 (d, J = 8.92 Hz, 2H), 7.15 (d, J = 2.48 Hz, 1H), 6.93 (d, J = 9.00 Hz, 2H), 3.62 (s, 3H), 3.78 (t, J = 4.84 Hz, 4H), 2.59 (s, 4H), 2.38 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80.3% | With sodium cyanoborohydride; zinc(II) chloride; In methanol;Heating; | General procedure: 4.1.52 5-Bromo-1-methyl-3-((5-(1-(oxetan-3-yl)piperidin-4-yl)pyridin-2-yl)amino)pyridin-2(1H)-one (14a) NaBH3CN (40 mg, 1.86 mmol) was added portionwise to a solution of compound 13b (225 mg, 0.62 mmol), oxetan-3-one (22.3 mg, 0.93 mmol) and ZnCl2 (256 mg, 1.86 mmol) in methanol (20 mL) at 0 C. The reaction mixture was stirred at 100 C for 5 h. After cooled down to room temperature, the reaction mixture was diluted with EtOAc and washed with brine. The organic layer was dried over Na2SO4 and concentrated under reduced pressure. The residue product was purified on a silica gel column using petroleum ether/EtOAc (1:1, v/v) as eluent to afford 14a (160 mg, 61.7%) as a yellow solid. 4.1.48 5-Bromo-1-methyl-3-((4-(4-methylpiperazin-1-yl)benzyl)amino)pyridin-2(1H)-one (12d) Using a method similar to that of 14a, compound 12d was synthesized as a white solid (472 mg, 80.3%). MS (ESI) m/z 391.2 [M+H]+; 1H NMR (400 MHz, CDCl3): delta 7.21 (d, J = 8.60 Hz, 2H), 6.91 (d, J = 8.64 Hz, 2H), 6.73 (d, J = 2.28 Hz, 1H), 6.18 (d, J = 2.24 Hz, 1H), 5.49 (d, J = 4.64 Hz, 1H), 4.20 (d, J = 5.64 Hz, 2H), 3.53 (s, 3H), 3.22 (t, J = 4.88 Hz, 4H), 2.59 (t, J = 4.92 Hz, 4H), 2.36 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With N-ethyl-N,N-diisopropylamine; HATU; In dichloromethane; at 25℃; for 5h; | Step 1 : N-( 5-bromo-l-methyl-2-oxo-l,2-dihydropyridin-3-yl)cyclobutanecarboxamide 101a To a mixture of cyclobutanecarboxylic acid (200 mg, 2.0 mmol), HATU (1.14 g, 3.0 mmol) and DIPEA (516 mg, 4.0 mmol) in DCM (8 mL) was added 3-amino-5-bromo-l- methylpyridin-2(lH)-one (330 mg, 1.62 mmol). The reaction mixture was stirred at 25C for 5 hours. The resulting mixture was evaporated under reduced pressure and the residue was purified on a silica-gel column eluting with 20:1 DCM/methanol to afford 101a (230 mg, 54%). MS-ESI: [M+H]+ 285.1 |
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