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CAS No. : | 201940-08-1 | MDL No. : | MFCD09953049 |
Formula : | C13H16BrNO2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | GOKHEUCWNVPUSC-UHFFFAOYSA-N |
M.W : | 298.18 | Pubchem ID : | 16102683 |
Synonyms : |
|
Num. heavy atoms : | 17 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.46 |
Num. rotatable bonds : | 3 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 74.52 |
TPSA : | 29.54 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | Yes |
CYP2C9 inhibitor : | Yes |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.08 cm/s |
Log Po/w (iLOGP) : | 3.29 |
Log Po/w (XLOGP3) : | 2.87 |
Log Po/w (WLOGP) : | 3.02 |
Log Po/w (MLOGP) : | 2.92 |
Log Po/w (SILICOS-IT) : | 2.85 |
Consensus Log Po/w : | 2.99 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -3.56 |
Solubility : | 0.0821 mg/ml ; 0.000275 mol/l |
Class : | Soluble |
Log S (Ali) : | -3.15 |
Solubility : | 0.211 mg/ml ; 0.000708 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -4.03 |
Solubility : | 0.0281 mg/ml ; 0.0000942 mol/l |
Class : | Moderately soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 2.15 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With sodium carbonate In tetrahydrofuran at 20℃; for 2 h; | To a solution of 4b (6 g, 30 mmol) in THF (100 mE) was added saturated Na2CO3 solution (25 mE), followed by 13oc20 (33 g, 151 mmol). The mixture was stirred at room temperature for 2 hours and evaporated under reduced pressure. The residue was extracted with ethyl acetate (50 mEx3). The combined organic phase was washed with brine, dried over anhydrous Na2504 and evaporated under reduced pressure. The residue was purified by silica gel column chromatography (PE:EA1O:1, v: v) to provide 4c (9 g, ca. 100percent yield). EC-MS: 298 [M+1]. |
85% | With sodium carbonate In dichloromethane; water for 4 h; Cooling with ice | 5-Bromoisoindoline (10.36 g, 52.3 mmol) was dissolved in 80 mL dichloromethane, and cooled in an ice bath. Boc anhydride (22.8 g, 104.6 mmol) was added dropwise followed by the addition of sodium carbonate (16.6 g, 156.9 mmol) and water (150 mL), and stirred in an ice bath for 4 hours. The organic phase was separated, washed with brine, and concentrated, and then the residue was purified by silica gel column chromatography to give the product 5-bromo-2-tert-butoxycarbonylisoindoline (13.3 g). Yield: 85 percent. MS m/z [ESI]: 298.0[M+1]. 1H-NMR (400 MHz, CDCl3): δ= 7.37 (2H, m) , 7.11 (1H, m), 4.62 (4H, m), 1.51 (9H, s). |
83.4% | With dmap In N,N-dimethyl-formamide at 25℃; for 10 h; | To a solution of 5-bromoisoindoline (3.98 g, 20.2 mmol) in DMF (20 ml) was added DMAP (40.0 mg) and BOC2O (8.81 g, 40.4 mmol). The mixture was stirred at 25°C for 10 h. After LC-MS showed the reaction was completed. The reaction mixture was concentrated to give the crude product, which was washed with pe to give the title compound(5.00 g, 83.4percent). ‘HNMR(400 MHz, CDC13) ö7.39-7.43 (2H,m) 7.09-7.18(1 H, m) 4.61- 4.68(4 H, m) 1.53(9 H, s). |
64% | Stage #1: With triethylamine In dichloromethane at 20℃; for 2.5 h; Cooling with ice Stage #2: With N,N-dimethyl-ethanamine In dichloromethane at 20℃; for 1 h; Cooling with ice |
Example 7 [1-(pyridin-4-yl)piperidin-4-yl]methyl 2-[amino(imino)methyl]isoindoline-5-carboxylate ditrifluoroacetate; step 1 Synthesis of tert-butyl 5-bromo-1,3-dihydro-2H-isoindole-2-carboxylate; To a solution (45 mL) of 5-bromoisoindoline (1.78 g, 9.00 mmol) in dichloromethane were added triethylamine (1.25 mL, 9.00 mmol) and di-tert-butyl dicarbonate (1.96 g, 9.00 mmol) under ice-cooling, and the mixture was stirred at room temperature for 2.5 hr. N,N-Dimethylethylamine (0.988 mL, 9.00 mmol) was added under ice-cooling, the mixture was stirred at room temperature for 1 hr, and 1 N hydrochloric acid was added to the reaction mixture. The mixture was extracted with dichloromethane, and the extract was washed with 1 N hydrochloric acid, saturated aqueous sodium hydrogen carbonate solution and saturated brine, dried over anhydrous magnesium sulfate, and concentrated under reduced pressure. The obtained residue was purified by silica gel chromatography (hexane:ethyl acetate 100:0 - 92:8) to give the title compound. yield (1.72 g, 5.76 mmol, 64percent) MS (ESI, m/z) 284 [(M-Me)+H]+ 1H-NMR (CDCl3)δ1.51 (s, 9H), 4.59-4.67 (m, 4H), 7.08-7.15 (m, 1H), 7.36-7.42 (m, 2H). |
61% | With sodium hydrogencarbonate In tetrahydrofuran at 20℃; | To a solution of 5-bromoisoindoline (1.3 g, 6.6 mmol) in THF (30 mL) were added NaHCC (1.66 g, 19.8 mmol) and (Boc)20 (4.3 g, 19.8 mmol). The reaction was stirred at rt overnight, then concentrated in vacuo. The residue was partitioned between H20 (40 mL) and DCM (40 mL), and the aqueous phase was extracted with DCM (60 mL x 2). The combined organic phases were dried over anhydrous a2S04, filtered and concentrated in vacuo. The residue was purified by a silica gel column chromatography (PE/EtOAc (v/v) = 5/1) to give the title compound as a pale yellow solid (1.2 g, 61percent). MS (ESI, pos. ion) m/z: 244.0 [M-56+l]+; NMR (400 MHz, CDC13) δ (ppm): 7.35-7.41 (m, 2H), 7.07-7.14 (m, 1H), 4.58-4.66 (m, 4H), 1.51 (s, 9H). |
61% | With sodium hydrogencarbonate In tetrahydrofuran at 20℃; | 5-bromoisoindoline (1.3 g, 6.6 mmol)Was dissolved in tetrahydrofuran (30 mL)To this was added sodium bicarbonate (1.66 g, 19.8 mmol) andBoc anhydride (4.3 g, 19.8 mmol).The reaction mixture was stirred at room temperature overnight and concentrated under reduced pressure.The residue was partitioned between dichloromethane (40 mL) and water (40 mL) and the separated aqueous phase was extracted with dichloromethane (60 mL x 2).There are mergersThe organic phase was dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure. The crude product was purified by silica gel column chromatography (petroleum ether / ethyl acetate (v / v) = 5/1) to give the title compound as a pale yellow solid (1.2 g, 61percent). |
53% | With dmap In tetrahydrofuran at 20℃; for 3 h; | To a solution of 5-bromo-2,3-dihydro-lH-isoindole (8.75 g; 1.0 equiv) in THF (126 mL) are added di-fert-butyldicarbonate (10.8 g; 1.12 equiv) and 4-dimethylaminopyridine (5.4 g; 1.0 equiv) and the reaction is stirred at room temperature for 3 h. The reaction is quenched with saturated sodium hydrogen carbonate and extracted with ethyl acetate. The combined organic extracts are dried (MgSO4), filtered, and concentrated to afford crude product, which is purified by silica gel chromatography to yield 7.0 g 5-bromo-l,3-dihydro- isoindole-2-carboxylic acid tert-butyl ester (23.49 mmol; 53percent yield over two steps). 1H NMR (400 MHz, CD3OD): δ 7.39 (dd, J= 4.0, 16.0 Hz, 1 H), 7.26 (s, 1 H), 7.12 (dd, J = 20.0, 4.0 Hz), 4.67 (s, 1 H), 4.62 (s, 2 H), 4.59 (s, 1 H), 1.51 (s, 9 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | With N-ethyl-N,N-diisopropylamine In dichloromethane at 20℃; for 1 h; | A solution of 5-bromoisoindoline, HC1 (255 mg, 1.00 mmol) in DCM (5 mL) was treated with DIEA (0.570 mL, 3.26 mmol) and (Boc)20 (0.290 mL, 1.25 mmol). The mixture was stirred at rt for 1 h. The reaction was quenched with brine and extracted withDCM (2x). The combined organic extracts were dried over MgSO4, filtered, and concentrated to afford the crude product, which was purified by silica gelchromatography to provide 176A (0.28 g, 88percent yield). MS(ESI) m/z 243.9 (M+H-tBu)t ‘H NMR (500MHz, CDC13)ö 7.45-7.35 (m, 2H), 7.17-7.08 (m, 1H), 4.68-4.60(m, 4H), 1.52 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | at 10 - 35℃; for 15 h; | Boc2O (2.58 g, 11.82 mmol) was added to a mixture of 5-bromoisoindoline-1,3-dione (2.23 g, 11.26 mmol) in THF (35 mL) at room temperature, and the mixture was stirred at room temperature for 15 hr. The reaction mixture was concentrated under reduced pressure. The residue was purified by silica gel column chromatography (solvent gradient; 0→14percent ethyl acetate/hexane) to give tert-butyl 5-bromoisoindoline-2-carboxylate (2.35 g, 7.88 mmol, 70.0percent) as a white solid. 1H NMR (300 MHz, CDCl3):δ 1.51(9H,s), 4.58-4.68(4H,m), 7.07-7.17(1H,m), 7.35-7.44(2H,m). |
57.6% | Stage #1: With borane-THF In tetrahydrofuran at 0℃; for 36.5 h; Reflux Stage #2: for 4 h; Reflux Stage #3: With dmap In tetrahydrofuran at 20℃; for 4 h; |
General procedure: Toa solution of 4a (10.0 g, 35.3 mmol)in MeOH (200 mL) was added 8M KOH solution (20 mL) and then heated to reflux.After 36 h, the reaction mixture was concentrated under reduced pressure.The mixture was diluted with H2O (100 mL), extracted with EA (75 mL×2), dried over Na2SO4 and concentrated under reducedpressure. The residue was dissolved in THF (100 mL). Di-tert-butyldicarbonate (9.0 g, 41.2 mmol) and DMAP (0.5 g, 4.0 mmol) was added and thenthe reaction mixture was stirred at room temperature for 4 h. Afterconcentration, the residue was purified by silica gel column chromatography(PET/EA = 15:1, v/v) to affordcompound 5a as colorless oil (8.3 g,75.5percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate In dimethyl sulfoxide at 90℃; for 12 h; Inert atmosphere | To a suspension of tert-butyl 5-bromo-2-(tert-butoxycarbonyl)isoindoline (1.2 g, 4 mmol) and bis(pinacolato)diboron (2 g, 8 mmol) in DMSO (20 mL) was added AcOK (1.6 g, 16 mmol), followed by Pd(dppf)Cl2-CH2Cl2 (327 mg, 0.4 mmol) under N2 atmosphere. The reaction was heated at 90 °C for 12 h, then cooled to rt and poured into EtOAc/H20 (300 mL/100 mL). The separatedorganic phase was washed with brine (100 mL), dried over anhydrous Na2S04, filtered and concentrated in vacuo. The residue was purified by a silica gel column chromatography (PE/EtOAc (v/v) =20/1) to give the title compound as yellow oil (1 g, 73percent). MS (ESI, pos. ion) m/z: 290.2 [M-56+l ; NMR (400 MHz, CDC13) δ (ppm): 7.68-7.74 (m, 2H), 7.23-7.30 (m, 1H), 4.64-4.70 (m, 4H), 1.53 (s, 9H), 1.36 (s, 12H). |
73% | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2 In dimethyl sulfoxide at 90℃; for 12 h; Inert atmosphere | Under nitrogen protection,A solution of 5-bromo-2- (tert-butoxycarbonyl) isoindoline (1.2 g, 4 mmol)And boronic acid pinacol ester (2 g, 8 mmol)Was dissolved in dimethylsulfoxide (20 mL)To this was added potassium acetate (1.6 g, 16 mmol) andPd (dppf) Cl2CH2Cl2 (327 mg, 0.4 mmol).The reaction solution was heated and stirred at 90 ° C for 12 hours,Cool to room temperature and pour into acetic acidEthyl acetate / water (300 mL / 100 mL), the separated organic phase was washed with brine (100 mL), dried over anhydrous sodium sulfate,Filtered and concentrated under reduced pressure. The residue was purified by silica gel column chromatography (petroleum ether / ethyl acetate (v / v) = 20/1)The title compound was obtained as a yellow oil (1 g, 73percent). |
72% | With potassium acetate In N,N-dimethyl-formamide at 85℃; for 4 h; | Step 2: tert-butyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,3-dihydro-2H-isoindole-2-carboxylate A solution of tert-butyl 5-bromo-1,3-dihydro-2H-isoindole-2-carboxylate (0.80 mmol), bis(pinacolato)diboron (0.96 mmol) and potassium acetate (2.5 mmol) in DMF (4 mL) was degassed. To this solution was added PdCl2dppf (1:1 complex with DCM, 0.04 mmol). The reaction mixture was heated at 85° C. for 4 hr and then allowed to cool to rt and diluted with EtOAc. The solution was washed with water and brine, dried over Na2SO4, filtered and concentrated. The residue was purified by column chromatography (10-30percent EtOAc in hexane) to give tert-butyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,3-dihydro-2H-isoindole-2-carboxylate (0.57 mmol, 72percent) as a white solid. LCMS: (FA) ES+346. |
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