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CAS No. : | 286947-03-3 | MDL No. : | MFCD08234976 |
Formula : | C6H5BrClNO | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | GFJMOZYIDADKLJ-UHFFFAOYSA-N |
M.W : | 222.47 | Pubchem ID : | 16748108 |
Synonyms : |
|
Num. heavy atoms : | 10 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.17 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 43.44 |
TPSA : | 22.12 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -5.9 cm/s |
Log Po/w (iLOGP) : | 2.2 |
Log Po/w (XLOGP3) : | 2.48 |
Log Po/w (WLOGP) : | 2.51 |
Log Po/w (MLOGP) : | 1.52 |
Log Po/w (SILICOS-IT) : | 2.67 |
Consensus Log Po/w : | 2.27 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -3.16 |
Solubility : | 0.154 mg/ml ; 0.000692 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.59 |
Solubility : | 0.573 mg/ml ; 0.00258 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -3.63 |
Solubility : | 0.0524 mg/ml ; 0.000236 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 2.04 |
Signal Word: | Warning | Class: | |
Precautionary Statements: | P280-P305+P351+P338 | UN#: | |
Hazard Statements: | H317-H319 | Packing Group: | |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | at 60℃; for 16 h; Inert atmosphere | To a 25ml flask containing (63.8mg, 1.2mmol) of sodium ethoxide was added 3ml dry ethanol. The mixture was stirred for 30min. 2-Chloro-3-methoxy-5-bromopyridine (230mg, 1.04mmol) was added to the mixture and heated to 60°C for 16h. The reaction was allowed to cool and the solvent was removed. Ethyl acetate (50ml) was added to the residue. The ethyl acetate solution was washed with water and then brine. The organic solvent was dried and concentrated under reduced pressure, and purified by ISCO flash chromatography using 10percent ethyl acetate in hexane to give 220mg (97percent yield) of the desired product. 1H NMR (300MHz, CDCl3) δ: 7.71 (s, 1H), 7.09 (s, 1H), 4.37 (qt, 2H), 3.82 (s, 3H), 1.38 (t, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52.9% | at 100℃; for 48 h; | A mixture of 5-bromo-2-chloro-3-methoxypyridine (36 g 162 mmol) in hydrobromic acid (200 mL 3683 mmol) was stirred at 100 for 48 hrs. Then the mixture was concentrated basified with saturated NaHCO3solution and extracted with EtOAc (600 mL x 2) . The combined organic extract was washed with brine dried over Na2SO4 filtered and concentrated. The crude material was purified by silica column chromatography (PE/EtOAc1021) . All fractions found to contain product by TLC (PE/EtOAc21 Rf0.6) were combined and concentrated to yield a light yellow oil of 5-bromo-2-chloropyridin-3-ol (21 g 86 mmol 52.9yield) 1HNMR(400 MHz METHANOL-d4) δ7.96 (t J2.0 Hz 1H) 7.47 (d J2.4 Hz 1H) ES-LCMS m/z 208.0 210.0 (M+H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With potassium carbonate In acetonitrile at 80℃; for 4 h; | Step 3: 5-bromo-2-chloro-3-methoxypyridine 5-Bromo-2-chloro-3-hydroxypyridine (1.88 g, 9 mmol), iodomethane (1.42g, 10 mmol), and K2CO3 (2.76g, 20 mmol) were added to acetonitrile. The solution was stirred at 80°C for 4 hours. The solvent was evaporated, and the residue was dissolved by adding CH2Cl2. The solution was washed by water, dried, concentrated, and purified by silica gel column chromatography to give 5-bromo-2-chloro-3-methoxypyridine (1.62 g, 81percent yield). MS m/z [ESI]: 223.9 [M+1]. |
25% | Stage #1: With sodium hydride In diethyl ether; N,N-dimethyl-formamide at 20℃; for 0.5 h; Stage #2: at 20℃; for 0.5 h; |
Example 51A 5-bromo-2-chloro-3-methoxypyridine The product from Example 40B (1.2 g, 5.8 mmol) in diethyl ether (5 mL) was added to a suspension of NaH (181 mg, 7.5 mmol) in dry DMF (30 mL) and diethyl ether (6 mL). After stirring at ambient temperature for 30 minutes, the mixture was treated with a solution of iodomethane (1.06 g, 7.5 mmol) in diethyl ether (3 mL) and stirring was continued for an additional 30 minutes. The reaction mixture was quenched with water (20 mL), extracted with diethyl ether (100 mL), dried (MgSO4), and concentrated under reduced pressure. The residue was purified on SiO2 (ethyl acetate/hexane, 1/4) to provide the title compound (0.32 g, 25percent) as a colorless oil. MS(DCI/NH3) m/z 222/224/226 (M+H)+. |
25% | Stage #1: With sodium hydride In DMF (N,N-dimethyl-formamide); diethyl ether for 0.5 h; Stage #2: for 0.5 h; |
The product from Example 40B (1.2 g, 5.8 mmol) in diethyl ether (5 mL) was added to a suspension of NaH (181 mg, 7.5 mmol) in dry DMF (30 mL) and diethyl ether (6 mL). After stirring at ambient temperature for 30 minutes, the mixture was treated with a solution of iodomethane (1.06 g, 7.5 mmol) in diethyl ether (3 mL) and stirring was continued for an additional 30 minutes. The reaction mixture was quenched with water (20 mL), extracted with diethyl ether (100 mL), dried (MgSO4), and concentrated under reduced pressure. The residue was purified on SiO2 (ethyl acetate/hexane, 1/4) to provide the title compound (0.32 g, 25percent) as a colorless oil. MS (DCI/NH3) m/z 222/224/226 (M+H)+. |
25% | Stage #1: With sodium hydride In DMF (N,N-dimethyl-formamide); diethyl ether at 20℃; for 0.5 h; Stage #2: for 0.5 h; |
A suspension of NaH (0.181 g, 7.5 mmol) in dry DMF (30 mL) and diethyl ether (6 mL) was treated with the product from Example 23B (1.2 g, 5.8 mmol) in diethyl ether (5 mL). After stirring at ambient temperature for 30 minutes, the mixture was treated with a solution of iodomethane (1.06 g, 7.5 mmol) in diethyl ether (3 mL). After stirring for 30 minutes, the mixture was quenched with water (20 mL), extracted with diethyl ether (100 mL), dried (MgSO4) and concentrated under reduced pressure. The crude was purified on SiO2 (ethyl acetate:hexane, 1:4) to provide the title compound as a colorless oil (0.32 g, 25percentprovide). MS(DCI/NH3) m/z 222/224/226 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With trichlorophosphate In dichloromethane at 20℃; Inert atmosphere | Phosphoryl chloride (POCl3) (4.8ml, 52.9mmol) was added to a solution of 5-bromo-3-methoxypyridine oxide (540mg, 2.6mmol) in 15ml DCM. The reaction mixture was stirred at room temperature overnight. The reaction mixture was washed with saturated NaHCO3 and brine. The organic layer was dried, concentrated under reduced pressure and purified using ISCO flash chromatography using 50percent ethyl acetate in hexane to provide 369mg product (62percent yield). 1H NMR (300MHz, CDCl3) δ: 8.05 (s, 1H), 7.34 (s, 1H), 3.93 (s, 3H). |
62% | With trichlorophosphate In dichloromethane at 20℃; | b. Preparation of Compound Phosphoryl chloride (POCl3) (4.8 mL, 52.9 mmol) was added to a solution of 5-bromo-3- methoxy-pyridine oxide (540 mg, 2.6 mmol) in 15 ml CH2C12. The reaction mixture was stirred at room temperature overnight. The reaction mixture was washed with sat. sodium bicarbonate and brine. The organic layer was dried, concentrated and purified using ISCO flash chromatography using 50percent ethyl acetate in hexane to provide 369 mg product (62percent yield). lH NMR (300 MHz, CDC13) δ: 8.05 (s, IH), 7.34 (s, IH), 3.93 (s, 3H). |
43.6% | With trichlorophosphate In dichloromethane at 40℃; for 16 h; | To a mixture of 3-bromo-5-methoxypyridine 1-oxide (2 g 9.80 mmol) in DCM (40 mL) was added POCl3(18.27 mL 196 mmol) . The mixture was stirred at 40 for 16 h. The mixture was evaporated and distributed between EA (100 mL x 2) and saturated NaHCO3solution (200 mL) . The combined organic extract was washed with brine dried over MgSO4 filtered and concentrated. The residue was purified by silica column chromatography (PE/EA 101) . All fractions found to contain product by TLC (PE/EA 101 Rf 0.6) were combined and concentrated to yield a light yellow oil of 5-bromo-2-chloro-3-methoxypyridine (1 g 4.27 mmol 43.6 yield) 1HNMR(400 MHz CDCl3) δ 8.05 (d J 2.0 Hz 1H) 7.33 (d J 2.0 Hz 1H) 3.93 (s 3H) ES-LCMS m/z 222.0 224.0 (M+H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | at 60℃; for 16 h; | c. Preparation of Compound To a 25 mL flask containing (63.8 mg, 1.2 mmol) of sodium ethoxide was added 3 mL dry ethanol. The mixture was stirred for 30 minutes. 2-Chloro-3-methoxy-5-bromopyridine (230 mg, 1.04 mmol) was added to the mixture and heated to 60 °C for 16 hours. The reaction was allowed to cool and the solvent was removed. Ethyl acetate was added (50 ml) was added to the residue. The ethyl acetate solution was washed with water and then brine. The organic solvent was dried and concentrated, purified by ISCO flash chromatography using 10percent ethyl acetate in hexane to give 220 mg (97percent yield) of the desired product. NMR (300 MHz, CDC13) δ: 7.71 (s, IH), 7.09 (s, IH), 4.37 (qt, 2H), 3.82 (s, 3H), 1.38 (t, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | at 100℃; for 0.333333 h; microwave irradiation | As shown in step 5-i of Scheme 5,5-bromo-2-chloro-3-methoxypyridine (1.0 g, 4.5 mmol, prepared in the same manner as Compound 1003 in Example 2 starting with 3- bromo-5-methoxypyridine) was treated with a sodium ethoxide/ethanol solution (5.05 mL, 21percent w/v, 13.5 mmol) and the reaction mixture microwave irradiated at 1000C for 20 minutes. Water was added and the ethanol evaporated under reduced pressure. The resulting aqueous solution was extracted with DCM and ether, followed by drying the combined extracts over MgSO4. After filtration, removal of the volatiles under reduced pressure provided 5-bromo-2-ethoxy-3-methoxypyridine (Compound 1016), 0.72 g, 69percent yield): ESMS (M+H) 232.32/234.23. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | at 100℃; for 0.333333 h; Microwave irradiation | As shown in step 3(b)-i of Scheme 3(b), 5-bromo-2-chloro-3-methoxypyridine (1.0 g, 4.5 mmol, prepared in the same manner as Compound 2003 in Example 2 starting with 3- bromo-5-methoxypyridine) was treated with a sodium ethoxide/ethanol solution (5.05 mL, 21percent w/v, 13.5 mmol) and the reaction mixture microwave irradiated at 100°C for 20 minutes. Water was added and the ethanol evaporated under reduced pressure. The resulting aqueous solution was extracted with DCM and ether, followed by drying the combined extracts over MgS04. After filtration, removal of the volatiles under reduced pressure provided 5-bromo- 2-ethoxy-3-methoxypyridine (Compound 2011), 0.72 g, 69percent yield): ESMS (M+H) |
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