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CAS No. : | 5805-39-0 | MDL No. : | MFCD00051496 |
Formula : | C13H11N3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | YWNXHTNWOQHFRL-UHFFFAOYSA-N |
M.W : | 209.25 | Pubchem ID : | 79869 |
Synonyms : |
|
Num. heavy atoms : | 16 |
Num. arom. heavy atoms : | 15 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 1.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 65.93 |
TPSA : | 54.7 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | Yes |
Log Kp (skin permeation) : | -5.76 cm/s |
Log Po/w (iLOGP) : | 1.7 |
Log Po/w (XLOGP3) : | 2.56 |
Log Po/w (WLOGP) : | 2.82 |
Log Po/w (MLOGP) : | 2.2 |
Log Po/w (SILICOS-IT) : | 2.84 |
Consensus Log Po/w : | 2.42 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -3.38 |
Solubility : | 0.0877 mg/ml ; 0.000419 mol/l |
Class : | Soluble |
Log S (Ali) : | -3.36 |
Solubility : | 0.0921 mg/ml ; 0.00044 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -5.08 |
Solubility : | 0.00176 mg/ml ; 0.00000841 mol/l |
Class : | Moderately soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.74 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
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* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | In acetic anhydride; acetic acid Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | In N,N-dimethyl-formamide; at 100℃; for 12h; | General procedure: The magnetically stirred mixture of 4a (0.41 g, 2.5 mmol) and triethyl orthoformate (0.3 g, 5 mmol, 2 equiv) in DMF (2.5 mL) was treated at 100 C (oil bath) for 12 h. The crude reaction mixture was poured into crushed ice (10 g) and the precipitated solid was filtered to obtain 6a as white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | In N,N-dimethyl-formamide at 100℃; for 12h; | 4.1.3. Typical experimental procedure for the synthesis ofbenzimidazoquinazoline. Synthesis of 6a [60] General procedure: The magnetically stirred mixture of 4a (0.41 g, 2.5 mmol) and triethyl orthoformate (0.3 g, 5 mmol, 2 equiv) in DMF (2.5 mL) was treated at 100 °C (oil bath) for 12 h. The crude reaction mixture was poured into crushed ice (10 g) and the precipitated solid was filtered to obtain 6a as white solid. |
89% | In N,N-dimethyl acetamide for 0.1h; Irradiation; | |
82% | for 0.1h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | In N,N-dimethyl acetamide for 0.1h; Irradiation; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.1 g | In acetic acid at 20℃; for 0.5h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With pyridine at 130℃; for 0.05h; Microwave irradiation; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
49% | With pyridine at 130℃; for 0.05h; Microwave irradiation; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With pyridine at 130℃; for 0.05h; Microwave irradiation; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With pyridine at 130℃; for 0.05h; Microwave irradiation; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | In ethanol for 6h; Reflux; | 2. Synthesis of compound 1 Compound 2 (160 mg, 0.77mmol) and 3 (200 mg, 0.64 mmol) were dissolved in 50 mL of absolute ethanol and heated to reflux for 6 h. The solvent was removed under reduced pressure. The crude solid was recrystallized from ethanol to give pale yellow brick-like crystals. The crystals were collected by filtration, washed with ethanol and dried under vacuum to give 1. Yield: 90%. M.p. 225.2-227.5 oC. 1H NMR (400 MHz, DMSO-d6): δ 9.55 (d, 1H), 8.82 (d, 1H), 8.01 (t, 1H, J1=8.0 Hz, J2 = 16 Hz), 7.94-7.86 (m, 2H), 7.70-7.61 (m, 2H), 7.56-7.34 (m, 4H), 7.31-7.01 (m, 8H), 6.97-6.83 (m, 4H), 7.16-7.11 (m, 3H). 13C NMR (100 MHz, DMSO-d6): δ 154.5, 151.1, 150.7, 147.9, 144.3, 144.0, 134.6, 131.9, 130.1, 128.6, 128.0, 127.1, 126.5, 125.1, 124.8, 124.4, 123.6, 122.7, 122.3, 119.1, 118.6, 115.3, 113.5, 112.4, 111.3, 110.9, 65.2, 64.4. HRMS (ESI+) cacld for C34H24N3O2 [M+H]+ 506.1869, found 506.1877. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | With (triphenylphosphine)gold(I) chloride; silver trifluoromethanesulfonate In methanol at 80℃; for 36h; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With platinum(IV) chloride In methanol at 100℃; for 48h; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | In ethanol for 6h; Reflux; | 2.1. Preparation of 6-[2-(4-nitro-phenyl)vinyl]-5,6-dihydrobenzo[4,5]imidazo[1,2-c]quinazo-line (L) To the ethanolic solution of 2-(2-aminophenyl)benzimidazole(0.209 g, 1.0 mmol) 4-nitro cinnamaldehyde (0.177 g, 1.0 mmol) wasadded dropwise at room temperature with continuous stirring. Thenthe resulting reaction mixture was refluxed for 6.0 h. After reducingthe solvent on a rotary evaporator a slight yellow coloured precipitatewas collected through filtration followed by washing with hot ethanolto remove the unreacted reactants. The precipitate was recrystallisedfrom methanol for purification and was used throughout the experimentand characterisation. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With dipotassium peroxodisulfate; sodium acetate; cobalt(II) diacetate tetrahydrate In N,N-dimethyl-formamide at 80℃; for 12h; | |
61% | With tert.-butylhydroperoxide; iodine In 1,4-dioxane at 100℃; for 12h; Green chemistry; | 2.2. General procedure for the synthesis of benzoimidazoquinazoline amines (3) General procedure: Isocyanide (0.75 mmol) was added to a stirred solution of 2-(1Hbenzo[d]imidazol-2-yl)aniline (0.5 mmol), I2 (0.1 mmol) and TBHP (70% aqueous solution, 1 mmol) in 1,4-dioxane (1 mL). The mixture was then kept under stirring at 100 °C for 12 h. After that, the concentrated residue was purified by the column chromatography over silica gel using n-hexane/ethyl acetate (4:1) as eluent to give the desired product 3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With acetic acid In ethanol for 6h; Cooling with ice; | 1 Example 1 Preparation of 4-(5,6-dihydrobenzo[4,5]imidazo[1,2-c]quinazolin-6-yl)-2,6-dimethoxyphenol (1) 2.09 g (10.0 mmol) of 2-(2-aminophenyl)-1H-benzimidazole And 1.82 g (10.0 mmol) of 3,5-dimethoxy-4-hydroxybenzaldehyde, 30 mL of absolute ethanol was mixed in a 100 mL Erlenmeyer flask, Yellow clear solution, Ice bath, Add acetic acid to adjust the pH value to 3. Reaction for 6 hours, The reaction liquid was precipitated as a colorless solid, Reaction is completed, filter, To give 3.70 g (97%) of the title compound, As a colorless solid. |
90% | With acetic acid In methanol for 0.25h; Microwave irradiation; | 2.3.1. General microwave-assisted method General procedure: Microwave-assisted synthesis was performed. Studied aldehydes(1.2 mmol) were dissolved in methanol (1 mL) and then slowly added to 5mL of a hot solution of 2-(2-aminophenyl)-1H-benzimidazole(1 mmol, 0.210 g) inside 10 mL microwave tubes.The reaction mixture was irradiated with a single-mode bench top microwave instrument after acidifying with a catalytic amount of glacial acetic acid. Only 5e15 min were required to finish the reaction at 102 °C as evident by TLC. Synergy software was used to monitor the reaction progress. After the reaction completion, thevial cooled down to 25 °C. Thereafter, it was dried by the vacuumed oven and washed with a suitable solvent to obtain a pure product with higher yield of 82-98% (0.25e0.33 g). Crystals were grown by slow evaporation of the solvent |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With iodine at 80℃; for 10h; Ionic liquid; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With acetic acid; In ethanol; at 20℃; for 8h;Sonication; | Weigh 830mg (5mmol) of 5-formyl-salicylic acid in a 100mL round bottom flask, add 40mL of absolute ethanol, and dissolve it by ultrasonication. If it is insoluble, add 2mL DMF to help dissolve.A clear clear solution was obtained, and 1045 mg (5 mmol) of 2-(2-amino-phenyl-1-yl)-benzimidazole was added portionwise to the obtained solution, and stirred at room temperature for 8 hours.A green solid was precipitated from the reaction mixture, and the residue of the reaction material was observed by TLC (petroleum ether: acetone = 2:1), and filtered to give the title compound 1.76 g (99%) as a yellow green solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With toluene-4-sulfonic acid In toluene at 100℃; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With acetic acid In methanol at 70℃; for 9h; | 2.5. Synthesis of the chemosensor (DIBI1) and characterization The methanolic solution (15 mL) of 2-(2-aminophenyl)-1Hbenzimidazole(0.0837 g, 0.402 mmol) was added slowly to 1,3-diphenyl-1H-pyrazole-4-carboxaldehyde (0.1 g, 0.402mmol) in methanolin the presence of 1-2 drops of glacial acetic acid, and the mixturewas refluxed for about 9 h at 70 °C. The solid product was collected byslow evaporation and washed several times with PET ether. The obtained colorless feathery product was then recrystallized usingchloroform-methanol mixture. Yield: 0.145 g (82%). 1H NMR(300 MHz, DMSO-d6): δ 8.86 (s, 1H), 8.01-7.87 (m, 3H), 7.74-7.68 (m,2H), 7.59 (d, J = 7.9 Hz, 1H), 7.54-7.45 (m, 4H), 7.40-7.23 (m, 5H),7.09 (t, J = 7.6 Hz, 1H), 6.99-6.84 (m, 3H), 6.57 (bs, 1H). 13C NMR(75 MHz, DMSO-d6): δ 152.00, 148.59, 144.94, 144.75, 139.96, 133.86,132.92, 132.31, 130.51, 129.40, 129.27, 129.12, 127.70, 125.71, 122.83,120.16, 119.99, 119.63, 119.48, 119.28, 115.71, 113.18, 111.35, 63.41.ESI-MS m/z: calcd, 439.51 (M+); found, 440.19 (M + H+) (Figs. S1,S2, S3). IR (KBr, cm-1): ν(N-H), 3425; ν(C-H), 2926; ν(C=N),1614. Anal. calcd for C29H21N5: C 79.17, H 4.77, N 15.92%; found: C79.22, H 4.79, N 15.90%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | In N,N-dimethyl-formamide; at 100℃; for 12h; | General procedure: The magnetically stirred mixture of 4a (0.41 g, 2.5 mmol) and triethyl orthoformate (0.3 g, 5 mmol, 2 equiv) in DMF (2.5 mL) was treated at 100 C (oil bath) for 12 h. The crude reaction mixture was poured into crushed ice (10 g) and the precipitated solid was filtered to obtain 6a as white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | Stage #1: (E)-3-phenylacrylic acid With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride In N,N-dimethyl-formamide at 20℃; for 0.5h; Stage #2: 2-(aminophenyl)benzimidazole In N,N-dimethyl-formamide at 20℃; | 4.2. General procedure [26] for the synthesis of substituted N-(2-(1H-benzo[d]imidazol-2-yl)phenyl)cinnamamide (12a-v) General procedure: To a stirred solution of substituted cinnamic acids 11f-k (1 equiv.)in dry DMF (5 mL), EDCI (1.05 equiv.), HOBt (1.05 equiv), were addedand stirred for 30 min at room temperature. Later, 2-(1H-benzo[d]imidazol-2-yl)aniline 11a-e (1.05 equiv.) was added to the reactionmixture and allowed to stir at room temperature until consumption ofstarting material. The reaction mixture was then diluted with EtOAc(20 mL), washed with cold H2O (2 times). The organic layer was driedover Na2SO4 filtered and concentrated. The resulting residue was purifiedby column chromatography using EtOAc/Hexane to afford thefinal compounds 12a-v. 4.2.1. N-(2-(1H-Benzo[d]imidazol-2-yl)phenyl)cinnamamide (12a)Off-white solid; Yield: 80%, 60 mg; M.p: 190-192 °C; FT-IR (cm-1):3360.5, 3014.5, 2936.5, 1740.5, 1610, 1585, 1350, 1050; 1H NMR(500 MHz, DMSO-d6): δ 13.47 (s, 1H), 13.21 (s, 1H), 8.86 (d,J = 8.3 Hz, 1H), 8.17 (d, J = 7.8 Hz, 1H), 7.82 (d, J = 6.9 Hz, 2H),7.75 (m, 2H), 7.57-7.41 (m, 5H), 7.3-7.24 (m, 3H), 6.93 (d,J = 15.6 Hz, 1H). 13C NMR (125 MHz, DMSO-d6): δ 164.5, 151.4,141.2, 139.0, 134.8, 131.2, 130.5, 129.5, 128.6, 127.8, 123.5, 123.3,120.6, 116.0. HRMS (ESI): m/z calculated for [M+H]+ C22H18N3O:340.1450 found 340.1453. |