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CAS No. : | 64987-85-5 | MDL No. : | MFCD00009634 |
Formula : | C16H18N2O6 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | JJAHTWIKCUJRDK-UHFFFAOYSA-N |
M.W : | 334.32 | Pubchem ID : | 125175 |
Synonyms : |
NSC 344483;Succinimidyl-4-(N-maleimidomethyl cyclohexane)-1-carboxylate;SMCC crosslinker;SMCC, heterobifunctional cross-linker;Succinimidyl 4-(N-maleimidomethyl)cyclohexan-1-carboxylate
|
Chemical Name : | 2,5-Dioxopyrrolidin-1-yl 4-((2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)methyl)cyclohexanecarboxylate |
Num. heavy atoms : | 24 |
Num. arom. heavy atoms : | 0 |
Fraction Csp3 : | 0.56 |
Num. rotatable bonds : | 5 |
Num. H-bond acceptors : | 6.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 87.92 |
TPSA : | 101.06 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -8.4 cm/s |
Log Po/w (iLOGP) : | 2.15 |
Log Po/w (XLOGP3) : | -0.09 |
Log Po/w (WLOGP) : | -0.44 |
Log Po/w (MLOGP) : | 0.81 |
Log Po/w (SILICOS-IT) : | 0.43 |
Consensus Log Po/w : | 0.57 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.53 |
Solubility : | 9.96 mg/ml ; 0.0298 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.58 |
Solubility : | 8.79 mg/ml ; 0.0263 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.13 |
Solubility : | 24.8 mg/ml ; 0.0743 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 0.0 |
Synthetic accessibility : | 3.88 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In N,N-dimethyl-formamide; at 20℃;pH Ca. 8;Darkness; | To produce the maleimide-functionalized doxorubicin, SMCC was dissolved in DMF with the addition of triethylamine (TEA) to adjust the solution pH to approximately 8, measured roughly with pH paper. To this, 1.1 equivalents of doxorubicin HC1 was added. The mixture was allowed to mix in the dark overnight at room temperature before purification by HPLC using a gradient of 30-90% acetonitrile against 0.1% trifluoroacetic acid over 40 minutes. Retention time for unreacted doxorubicin was 13 minutes, unreacted SMCC was 23.5 minutes, and the product SMCC-Dox was 24.5 minutes. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 420℃; for 4h; | DIEA (78 pL, 0.50 mmol) and 6-aminohexanoic acid (44 mg, 0.33 mmol) were added to a solution of succinimidyl-4-(N-maleimidomethyl)cyclohexane-1 -carboxylate (0.30 mmol) in DMF (5 mL) in a 40 mL vial, and the reaction mixture was stirred at rt for 4 h. Thereaction mixture was then purified by HPLC and lyophilized to give 76-(4-((2,5-dioxo-2,5- dihydro-1 H-pyrrol-1 -yl)methyl)cyclohexanecarboxam ido)hexanoic acid (i-2). MS (M+1) =351, 1H-NMR (MeOD, 400 MHz) O 7.79 (bs, 1H), 6.76 (s, 2H), 3.29 (d, 2H, J=4.4 Hz), 3.10 (m, 2H), 2.24 (t, 2H, J=7.2 Hz), 2.07 (m, 4H), 1.56(m, 3H) 1.43 (m, 3H), 1.33 (m, 3H), 0.97 (m, 2 H). | |
In water; N,N-dimethyl-formamide; at 20℃; for 4.08333h; | A solution of succinimidyl 4-[N-maleimidomethyl]cyclohexane-l-carboxylate (PIERCE Ref: 22360) (25 mmol) in DMF (10OmL) was stirred for 5 min, and was added at room temperature to a solution of 6-aminohexanoic acid (50 mmol) (SIGMA Ref: A2504) in H2O(50 mL). The mixture was stirred for 4h at room temperature. Dichloromethane was added(100 mL) and the organic layer was washed with water (3x150 mL) and then with 5percent aqueous citric acid (3x150 mL) to remove 6-aminohexanoic acid excess. The organic layer was dried under vacuum and the resulting white powder was stored at -200C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In water; N,N-dimethyl-formamide; at 20℃; for 4.08333h; | A solution of succinimidyl 4-[N-maleimidomethyl]cyclohexane-l-carboxylate (PIERCE Ref: 22360) (25 mmol) in DMF (100 mL) was stirred for 5 min, and was added at room temperature to a solution of tralphapiji-4-(aminomethyl)cyclohexanecarboxylic acid (50 mmol) (SIGMA ref: 08455) in H2O (50 mL). The mixture was stirred for 4h at room temperature. Dichloromethane was added (100 mL) and the organic layer was washed with water (3x150 mL) and then with 5percent aqueous citric acid (3x150 mL) to remove trans-4- <n="46"/>(aminomethyl)cyclohexanecarboxylic acid excess. The organic layer was dried under vacuum and the resulting white powder was stored at -20°C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dimethyl sulfoxide;Aqueous phosphate buffer;Conversion of starting material; | A 20 mM solution of SMCC (6.69 mg/mL) was prepared in dimethylsulfoxide (DMSO). The solution was diluted 1/40 in Assay Buffer and the absorbance of the samples measured at 302 nm. The concentration of the stock solution was calculated using an extinction coefficient of 602 M-1cm-1. | |
In dimethyl sulfoxide;Aqueous phosphate buffer;Conversion of starting material; | A 20 mM solution of SMCC (6.69 mg/mL) was prepared in DMSO. The solution was diluted 1/40 in Assay Buffer and the absorbance of the samples was measured at 302 nm. The concentration of the stock solution was calculated using a molar extinction coefficient of 602 M-1 cm-1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Aqueous phosphate buffer; | Trastuzumab antibody was obtained from Genentech for conjugation to DM1 using the non-cleavable heterobifunctional cross-linking reagent SMCC. The antibody was buffer-exchanged from 50 mM potassium phosphate/2 mM EDTA, pH 6.0 into 50 mM potassium phosphate/50 mM sodium chloride/2 mM EDTA, pH 6.5 (Buffer A). The antibody was then reacted with 7.5-fold molar excess SMCC linker and purified by Sephadex G25 resin before it was conjugated with DM1. The final conjugate was again purified by Sephadex G25 resin. The resulting conjugate contained 3.1 moles of DM1 per mole of antibody. | |
In dimethyl sulfoxide; at 20℃; for 2h;Aqueous phosphate buffer; | The antibody was modified using a 7.5-fold molar excess of SMCC at 20 mg/mL antibody. The reaction was carried out in Buffer A (95percent v/v) with DMSO (5percent v/v) for 2 hours at room temperature with stirring. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dimethyl sulfoxide; at 20℃; for 2h;Aqueous phosphate buffer; | The antibody was split into two samples; one was modified using a 7.5-fold molar excess of SMCC cross-linker, the other with a 8.5-fold molar excess of SMCC cross-linker. Samples were reacted at 8 mg/mL antibody. The reactions were carried out in Buffer A (95percent v/v) with DMSO (5percent v/v) for 2 hours at room temperature with stirring. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With edetate disodium; In water; dimethyl sulfoxide; at 20℃; for 1h;pH 7.5; | 1. Derivatization with SMCC. Five mg of Rituximab at a concentration of 5 mg/mL in 0.05M phosphate buffer containing 3 mM Na2EDTA (PBE; pH 7.5) and 2.5 muL of SMCC (9.3 mg/mL in dimethyl sulfoxide) were incubated with continuous rotation at room temperature for 1 h using a SMCC/Rituximab molar ratio of 4.5. Conjugated protein was purified by chromatography on a PD-10 column in the same PBE buffer. 2. Derivatization with SATA. Five mg of Rituximab at a concentration of 5 mg/mL in PBE buffer was mixed with 2.5 muL of SATA (5.8 mg/mL in dimethyl sulfoxide) and incubated at room temperature for 1h using a SATA/Rituximab molar ratio of 4.0. The excess SATA was then removed by chromatography on a PD-10 column and the purified protein was deacetylated with 5 mg of hydroxylamine-HCl (Sigma) for 5 min at room temperature. Excess hydroxylamine-HCl was removed by chromatography on a PD-10 column. 3. Rituximab Homodimer Formation and Physical Characterization SMCC- and SATA-derived proteins were mixed together and incubated with continuous rotation at room temperature for 1-2 h. The preparation was dialyzed overnight in PBS at 4° C., sterilized by filtration through a 0.22 mum non-pyrogenic filter (Costar, Corning, N.Y.), and further fractionated on a Superose 6 Column (FPLC) using the Pharmacia AKTA described above at flow rate of 0.5 mL/min. In general, the polymer revealed a retention time of approximately 16 min while the dimer revealed a retention time of approximately 29 min by FPLC. The protein fractions from FPLC were further concentrated using a Centricon YM-100 (Millipore, Billerica, Mass.), filter sterilized, and analyzed by SDS/PAGE. The expected molecular weights of the Rituximab dimer was observed for the dimer preparation by non-reducing SDS-PAGE. A 2percent agarose gel was used with murine IgM as a standard (970 kDa) for sizing the polymer. By this method, one band was resolved for the Rituximab polymer which was slightly higher than that of IgM corresponding to the molecular weight of approximately 5 immunoglobulin molecules. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45%Spectr. | In dimethyl sulfoxide; at 20℃; for 3h;borate-buffered saline; | A solution containing 20 mg (60 mumoles) of N-hydroxysuccinimidyl 4-(N- methylmaleimido)cyclohexane-l-carboxylate (SMCC) in 400 muL of anhydrous DMSO was added to a buffered pH 8.6 solution containing 34 mg (~20 mumoles) of crude YE(ahLac)2 (10) in 10 mM borate-buffered saline. The mixture was stirred at room temperature for 3 h, then purified and desalted by size exclusion gel filtration (G- 10 Sephadex, 0.5 x 33 cm) using 20percent ethanol in H2O. Fractions were collected and those which corresponded to the product by 1H NMR spectroscopy was combined and concentrated under diminished pressure. HPLC analysis and purification of the residue was accomplished on an Rainin reversed phase Ci8 column (4.6 mm x 150 mm). The column was washed with a linear gradient system of 50 mM aqueous sodium phosphate (pH 5.8) containing increasing amounts OfCH3CN (0-20 min at a flow rate of 1.0 mL/min. The eluate was monitored at 277 nm; the product eluted at 9.4 min. The yield was determined by UV spectroscopy (A277 = 0.350/1 mL aliquot; 26 mL solution, 45percent) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃; for 0.333333h; | SMCC (0.334 g), monoprotected diamine reagent (0.248 g) and DIEA (0.17 mL) were dissolved in dichloromethane (20 mL), stirred at ambient temperature for 20 min. The product was purified by flash chromatography, and further reacted with TFA (2 mL) and anisole (0.5 mL) for 2 hours, and the final product was isolated after removal of TFA and anisole. The corresponding hydrochloride salt was prepared by dissolving in HCl and evaporating off HCl. Mass spectrum: M+H m/e 368. The process schematically shown in Scheme-6. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With triethylamine; In N,N-dimethyl-formamide; at 50℃; for 24h; | To a solution of 4-amino-2-butyl-l-(2-hydroxy-2methylpropyl)-7-methoxycarbonyl-lH- imidazo[4,5-c]quinoline S7 (37 mg, 0.1 mmol, 1.0 equiv) and 2,5-dioxopyrrolidin-l-yl 4-[(2,5- dioxo-2,5-dihydro-lH-pyrrol-l-yl)methyl]cyclohexanecarboxylate (66 mg, 0.20 mmol, 2.0 equiv) in DMF (2.0 mL) at 25 °C was added NEt3 (40 iL, 0.30 mmol, 3.0 equiv) in one injection. The reaction was heated at 50 °C for 24 h. The solvent was then removed in vacuo and the solid was redissoved in 1 :9 MeOH/EtOAc (50 mL), washed successively with saturated NaHC03 solution (15 mL), H20 (15 mL) and saturated aqueous NaCl (15 mL) and the organic layer concentrated. TLC and MS analysis indicated existence of both the imidazoquinoline starting material and the desired product. Purification by flash column chromatography on silica gel (CH2Cl2-l/9 MeOH/CH2Cl2, gradient) afforded the title compound 550 (40 mg, 68percent) as a white solid: 1H NMR (CD3OD, 600 Hz) delta 1.04 (t, J= 7.2 Hz, 3H), 1.11-1.18 (m, 2H), 1.26 (br s, 6H), 1.51-1.66 (m, 4H), 1.68-1.85 (m, 3H), 1.91 (pent, J= 7.2 Hz, 2H), 3.13 (t, J= 7.2 Hz, 2H), 3.40 (d, J= 7.2 Hz, 2H), 6.83 (s, 2H), 7.98 (d, J= 9.0 Hz, 1H), 8.41 (d, J= 9.0 Hz, 1H), 8.66 (s, 1H); 13C NMR (CD3OD, 150 Hz) delta 12.9, 22.3, 27.2, 28.5, 28.7, 29.5, 29.6, 36.6, 43.1, 45.4, 51.4, 54.9, 71.1, 119.9, 121.4, 123.7, 126.5, 126.6, 126.6, 128.0, 128.8, 130.5, 133.9, 135.2, 142.5, 144.3, 158.2, 159.9, 160.0, 166.8, 171.4; MS (APCI+): calcd C32H40N5O6 [M + H]+ 590.3, found 590.3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With N-ethyl-N,N-diisopropylamine; | The drug-linker SMCC-MDC was prepared in the following reactions: (1) 3-mercaptopropanoic acid (MPr) was reacted with N-succinimidyl 4-(maleimidomethyl)cyclohexane-1-carboxylate (SMCC) in the presence of N,N-diisopropylethylamine (DIEA), giving the MPr-SMCC at a yield of over 95percent; |
95% | With N-ethyl-N,N-diisopropylamine; | The drug-linker SMCC-MDC was prepared in the following reactions: (1) 3-mercaptopropanoic acid (MPr) was reacted with N-succinimidyl 4-(maleimidomethyl)cyclohexane-1-carboxylate (SMCC) in the presence of N,N-diisopropylethylamine (DIEA), giving the MPr-SMCC at a yield of over 95percent; |
95% | With N-ethyl-N,N-diisopropylamine; | The drug-linker SMCC-MDC was prepared in the following reactions: (1) 3-mercaptopropanoic acid (MPr) was reacted with N-succinimidyl 4-(maleimidomethyl)cyclohexane-1-carboxylate (SMCC) in the presence of N,N-diisopropylethylamine (DIEA), giving the MPr-SMCC at a yield of over 95percent; |
> 95% | With N-ethyl-N,N-diisopropylamine; | The drug-linker SMCC-MDC was prepared in the following reactions: (1) 3-mercaptopropanoic acid (MPr) was reacted with N-succinimidyl 4-(maleimidomethyl)cyclohexane-1-carboxylate (SMCC) in the presence of DIEA, giving the MPr-SMCC at a yield of over 95percent; Secondly, condensation of N-Me-L-Ala-MDC, which was prepared by deprotection of Fmoc-N-Me-Ala-MDC under a base piperidine in CH3CN, with MPr-SMCC under a coupling reagent EDC, giving the desired coupled product SMCC-MDC in 60-70percent yield over two steps. Antibody Bat0206 (Abu) was diluted to 2.5 mg/mL in solution A (50 mM potassium phosphate, 50 mM NaCl, and 2 mM EDTA, pH 6.5). SMCC-MDC was added to give a ratio of SMCC-MDC to antibody of 7:1 mole equivalent. Then DMA was added to 15percent (v/v) to the reaction and reaction was mixed by stirring for 4 h at ambient temperature. D-Lmcc-Bat0206 conjugate was purified from excess unreacted or hydrolyzed reagent and excess SMCC-MDC using a G25 gel filtration column equilibrated in pH 7.4 phosphate buffer (aqueous). The conjugate was then dialyzed overnight into pH 7.4 phosphate buffer (aqueous) and then filtered through a 0.22 mum filter for final storage. The number of SMCC-MDC molecule per Abu molecule in the final conjugate was measured by determining absorbance of the conjugate at 252 and 280 nm and using known extinction coefficients for SMCC-MDC and antibody at these two wavelengths. A ratio of maytansinoid compound to antibody of 3.5:1.0 was normally obtained. |
95% | With triethylamine; In dichloromethane; at 20℃; for 2h; | In the solution of SMCC (3 g) in anhydrous CH2Cl2 (80 ml), mercaptoacetic acid (0.937 ml) and triethylamine (1.428 ml) wereadded. The mixture was stirred for 2 h at room temperature. After evaporation of the solvent under vacuum, the solid was purified by column chromatography (CH2Cl2:Methanol = 20:1) to yield compound 2(3.76 g, 95percent). The structure was identified by ESI-QTOF-MS, 1H and 13C NMR. (M + H)+ = 441.1591; (M + Na)+ = 463.1132. 1H NMR(400 MHz, DMSO-d6): delta 12.33 (s, 1H), 4.02 (1H,dd, J = 8.9, 3.8 Hz), 3.25(d,2H, J = 7.0 Hz), 3.22?3.13 (m, 1H), 2.94 (dd,1H,J = 13.5, 6.7 Hz),2.86 (dd,1H,J = 13.7, 6.7 Hz), 2.8 (s,3H), 2.69 (t,1H,J = 12.0 Hz), 2.62?2.44 (m, 4H), 2.00 (d,2H,J = 11.1 Hz), 1.69 (d,3H,J = 13.3 Hz), 1.48?1.27 (m, 2H), 1.05 (dd,2H,J = 23.6, 11.0 Hz). 13C NMR (100 MHz,DMSO-d6): delta 177.0, 175.3, 172.8, 170.8, 170.2, 43.7, 35.6, 34.9, 34.0, 28.5,27.8, 26.8, 25.4. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60.0% | In aq. phosphate buffer; N,N-dimethyl-formamide; at 20℃; for 1.5h; | To a solution of (5) H-Lys(Gd-DOTA)-NH2 (24.00 mg, 3.49×10-2 mmol) dissolved in PBS buffer (1 mL) of pH 8.5, the SMCC linker (17.51 mg, 5.24×10-2 mmol) in DMF (2 mL) was added. The solution was stirred for 1.5 h at room temperature while using LC-MS method B: 20-100% to check the reaction progress every 0.5 h. Once the reaction was complete, the material was concentrated down. The product was purified through SPE method B: 10-50%. The product was found in fractions 15-25%. Yield: 19.0 mg (2.10×10-2 mmol, 60.0%); LC-MS=Calcd. for C34H52GdN8O11: 906.07 (m/z), found: 904.9 [M-H]-. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98.3% | In aq. phosphate buffer; N,N-dimethyl-formamide; at 20℃; for 1.5h; | To a solution of (28) H-Lys(Gd-DOTA)-Lys(Gd-DOTA)-NH2 (3.50 mg, 2.58×10?3 mmol) dissolved in PBS buffer (0.25 mL) of pH 8.5, the SMCC linker (2.20 mg, 6.45×10?3 mmol) in DMF (0.25 mL) was added. The solution was stirred for 1.5 h at room temperature while using LC-MS methanol B: 20-100percent to check the reaction progress every 0.5 h. Once the reaction was complete, the material was concentrated down. The product was purified through SPE method B: 10-50percent. The product was found in fractions 15-25percent. Yield: 4.0 mg (2.54×10?2 mmol, 98.3percent); LC-MS=Calcd. for C56H88Gd2N14O19: 1575.8 (m/z), found: 1573.8 [M?H]?. The mass spectra of this compound is shown in FIG. 3, displaying the di-Gd isotope pattern. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88.17% | In aq. phosphate buffer; N,N-dimethyl-formamide; at 20℃; for 1h; | To a solution of (36b) H-DLys(Cy5.5)-Lys(Gd-DOTA)-NH2 (24.00 mg, 3.49×10?2 mmol) dissolved in PBS buffer (1 mL) of pH 7.4, the SMCC linker (17.51 mg, 5.24×10?2 mmol) in DMF (2 mL) was added. The solution was stirred for 1 h at room temperature while using LC-MS methanol B: 20-100percent to check the reaction progress every 0.5 h. Once the reaction was complete, the material was concentrated down. The product was not purified; the residue was used directly in the next reaction. Yield: 4.1 mg (2.18×10?3 mmol, 88.17percent); LC-MS=Calcd. for C83H112GdN12O22S3: 1883.3 (m/z), found: 941.1 [M?H/2]?. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 1h; | Example 78: (1 R,3S,4S)-N-((S)-1 -(((3R,4S,5S)-1 -((S)-2-((1 R,2R)-3-(((S)-1 -((4-((4-((2,5- Dioxo-2,5-dihydro-1 H-pyrrol-1 -yl)methyl)cyclohexanecarboxamido)methyl)phenyl)amino)- 1 -oxo-3-phenylpropan-2-yl)amino)-1 -methoxy-2-methyl-3-oxopropyl)pyrrolidin-1 -yl)-3- methoxy-5-methyl-1 -oxoheptan-4-yl)(methyl)amino)-3-methyl-1 -oxobutan-2-yl)-2-methyl- 2-azabicyclo[2.2.1 ]heptane-3-carboxamide (40)Step 6: (1 R,3S,4S)-N-((S)-1 -(((3R,4S,5S)-1 -((S)-2-((1 R,2R)-3-(((S)-1 -((4- (Aminomethyl)phenyl)amino)-1 -oxo-3-phenylpropan-2-yl)amino)-1 -methoxy-2-methyl-3- oxopropyl)pyrrolidin-1 -yl)-3-methoxy-5-methyl-1 -oxoheptan-4-yl)(methyl)amino)-3-methyl- 1 -oxobutan-2-yl)-2-methyl-2-azabicyclo[2.2.1 ]heptane-3-carboxamide (12 mg, 0.014 mmol) and 2,5-dioxopyrrolidin-1 -yl 4-((2,5-dioxo-2,5-dihydro-1 H-pyrrol-1 - yl)methyl)cyclohexanecarboxylate (5.6 mg, 0.017 mmol) were dissolved in DMF (1 ml_), and DIEA (10.8 mg, 0.084 mmol) was added. The reaction mixture was stirred for 1 hour at room temperature. LCMS analysis indicated the completion of the reaction. The crude was purified by reverse phase HPLC using C18 column, eluted with 10-90percent acetonitrile- H20 containing 0.05percent TFA. The fractions containing the desired product were pooled and lyophilized to obtain compound 40, MS m/z 1079.5 (M+1 ). Retention time 1 .12 minutes. | |
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 1h; | Step 6: (1 R,3 S,4S)-N-((S)- 1 -(((3R,4S,5 S)- 1 -((S)-2-((i R,2R)-3-(((S)- 1 -((4- (Aminomethyl)phenyl)amino)- 1 -oxo-3 -phenylpropan-2-yl)amino)- 1 -methoxy-2-methyl-3 - oxopropyl)pyrrolidin- i-yl)-3 -methoxy-5 -methyl-i -oxoheptan-4-yl)(methyl)amino)-3 -methyl-i -oxobutan2-yl)-2-methyl-2-azabicyclo [2.2.1 jheptane-3 -carboxamide (12 mg, 0.014 mmol) and 2,5 -dioxopyrrolidin5 1 -yl 4-((2,5 -dioxo-2,5 -dihydro- 1 H-pyrrol- 1 -yl)methyl)cyclohexanecarboxylate (5.6 mg, 0.017 mmol)were dissolved in DMF (1 mL), and DIEA (10.8 mg, 0.084 mmol) was added. The reaction mixture was stirred for 1 hour at room temperature. LCMS analysis indicated the completion of the reaction. The crude was purified by reverse phase HPLC using Ci8 column, eluted with 10-90percent acetonitrile-H20 containing 0.05percent TFA. The fractions containing the desired product were pooled and lyophilized to obtaincompound 40, MS m/z 1079.5 (M+i). Retention time i.i2 minutes. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Synthesis of Compound 1 (ZJ-MCC-Ahx-dEdEdEG): The peptide Fmoc-Ahx-dGlu-dGlu-dGlu-G was assembled on a Wang resin. The three glutamates (dGlu) are of D-isoform. Peptide synthesis was carried out manually by Fmoc chemistry with HCTU (2-(6-Chloro-1H-benzotriazole-1-yl)-1,1,3,3-tetramethylaminium hexafluorophosphate) activation. Generally, peptides were synthesized at a 0.01 mmol scale starting from the C-terminal amino acid on solid support. Fmoc-deprotection at each cycle was carried out using 20percent piperidine in DMF. Coupling reactions were carried out using 3.3 eq. of Fmoc-amino acids in DMF activated with 3.3 eq. of HCTU and 5 equivalents of diisopropylethylamine (DIPEA) in DMF. These steps were repeated each time with an amino acid added. After the peptide sequence was built on the resin, the Fmoc group of the N-terminal amino acid was deprotected. Coupling of 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC) to the N-terminal amine group was achieved with 3.3 equivalents of SMCC in DMF. Coupling of Cys-C(O)-Glu was performed using 3.3 equivalents of Cys-C(O)-Glu in DMF after coupling SMCC to the peptide. The final peptide resin was washed with DMF and then dichloromethane and dried. Cleavage and deprotection were carried out using TFA/water/triisopropylsilane (950:25:25) for 1 h, the resin was removed by filtration and washed with TFA. The combined filtrate was dried under nitrogen. The synthesized peptide was precipitated by the addition of diethyl ether and collected by centrifugation. The cleaved peptide was purified by preparative HPLC. The products were ascertained by high resolution matrix-assisted laser desorption/ionization mass (MALDI-MS) spectra. Then Fmoc was deprotected followed by coupling of SMCC and Cys-C(O)-Glu. The product has retention time of 11.9 minutes on analytical HPLC with 0-55percent gradient over 45 minutes (flow rate 1 ml/min; A: 10 mM triethylammonium acetate TEAA, pH 7.0; B was acetonitrile.) The mass was verified by MALDI/TOF mass spectrometry?Calculated: 1088.4 (C44H64N8O22S). Found m/z: 1089.4 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With triethylamine; In dichloromethane; at 20℃; for 1h; | 2-mercaptoethanol (0.755 ml) and triethylamine (1.428 ml) were added to the solution of SMCC (3 g) in anhydrous DCM (42 ml). The mixture was stirred for 1 h under room temperature and the crude product was purified by column chromatography (DCM:Methanol =100:1) to give compound 7 (3.52 g, 95percent). (M + H)+ = 413.1382;(M + Na)+ = 435.1200; 1H NMR (400 MHz, DMSO-d6):delta 4.88 (s, 1H),4.20 (s, 1H), 4.05?4.01 (m, 1H), 3.68?3.49 (m, 2H), 3.28?3.11 (m, 3H),2.92?2.84 (m, 1H), 2.80(s, 3H), 2.76?2.66 (m, 2H), 2.56 (d, 1H, J =4 Hz), 2.00 (d, 2H, J = 11.6 Hz), 1.80?1.48 (m, 3H), 1.38 (q, 2H, J =12.0 Hz), 1.05 (dd, 2H, J = 23.7, 11.3 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In N,N-dimethyl-formamide; at 20℃; for 0.5h; | Using a 3 mL vial, 1 tL of diisopropylethylamine (6 tmol) and 1 .0 mg of succinimidyl-4-(N-maleimidomethyl)cyclohexane-1-carboxylate (3 tmol) were added to 3.0 mg ofcompound (A-5) (3 tmol) in DMF (1 mL) and the reaction mixture was stirred at rt for 30 mm. The reaction mixture was purified by HPLC and lyophilized to give compound (17). MS (m+2/2) = 635.4, HPLC Peak RT = 0.898 mm, 1 H-NMR (MeOD-d4, 400 MHz) O10.78 (s, 1 H), 8.84 (m, 1 H), 8.59 (d, 1 H, J = 2.0 Hz), 8.48 (s, 1 H), 8.47 (d, 1 H, J = 10.0Hz), 8.34 (s, 1H), 8.15 (d, 1H, J = 8.4 Hz), 8.01 (d, 1H, J = 10.0 Hz), 7.92 (d, 1H, J = 8.8Hz), 7.69 (s, 1H), 7.62 (d, 1H, J = 8.8 Hz), 6.91 (d, 1H, J = 9.2 Hz), 6.76 (s, 2H), 5.27 (m,1H), 5.13 (m, 1H), 4.75 (m, 1H), 4.62 (dd, 1H, J = 5.2 and 9.6 Hz), 4.49 (m, 2H), 4.30 (dd,1H, J = 8.8 and 18.4 Hz), 4.11 (m, 1H), 4.02 (d, 1H, J = 13.2 Hz), 3.94 (d, 1H, J = 13.2Hz), 3.92 (m, 1H), 3.85 (s, 3H), 3.353.75 (m, 15H), 3.05 (m, 3H), 3.00 (t, 2H, J = 6.4 Hz),2.92 (dd, 1H, J = 12.0 and 14.8 Hz), 2.39 (m, 4H), 2.02 (m, 2H), 2.00 (s, 1H), 1.101.75(m, 18H), 1.10 (m, 1H), 0.94 (d, 3H, J = 6.8 Hz), 0.85 (m, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30.5% | In N,N-dimethyl-formamide; at 20℃; for 1.5h;pH 8.5; | Compound (16): SMCC-Lys(DOTA-La)?NH2. To a solution of (4) Fmoc-Lys(DOTA-La)?NH2 (88.0 mg, 0.10 mmol) dissolved in DMF (8 mL), DEA (71.3 mg, 1.0 mmol) was added drop-wise. The solution was stirred for 2 hours at room temperature while using LC-MS method A: 20-100percent to check the reaction progress every 0.5 hours. Once the reaction was complete, the material was rotary evaporated. This concentrated material was then dissolved in H2O and added to a separatory funnel for extraction using pure EtOAc for the organic layer and water for the aqueous layer. A sequential back extraction was done on the aqueous layers with a single layer of EtOAc. Product was found in the aqueous layer which was concentrated and dried in a vacuum. Yield of H-Lys(DOTA-La)?NH2: 63.0 mg (0.95×10?2 mmol, 95.0percent); LC-MS=Calcd. for C22H38LaN7O8: 667.18 (m/z). found: 666.3 [M?H]?, 668.4 [M+H]+, To a solution of H-Lys(DOTA-La)?NH2 (55.00 mg, 8.16×10?2 mmol) dissolved in PBS buffer (1 mL) of pH 8.5, the SMCC linker (17.51 mg, 5.24×10?2 mmol) in DMF (2 mL) was added. The solution was stirred for 1.5 h at room temperature while using LC-MS method B: 20-100percent to check the reaction progress every 0.5 h. Once the reaction was complete, the material was concentrated in a vacuum. The product was purified through SPE method B: 10-50percent. The product was found in fractions 15-25percent. Yield: 22.1 mg (2.5×10?2 mmol, 30.5percent); LC-MS=Calcd. for C34H51LaN8O11: 886.27 (m/z). found: 885.5 [M?H]?. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; at 20℃; for 18h;Inert atmosphere; | [000911 DM1 (87 mg, 0.117 mmol) and SMCC (118 mg, 0.354 mmol) in THF (2.0 mL) at room temperature were treated with DIPEA (45.7 mg, 0.354 nimol). The reaction mixture was stirred under nitrogen at room temperature for 18 hours. The reaction was quenched with water and extracted with CH2C12. The organic layer was washed with brine, dried over MgSO4(s), and concentrated under reduced pressure to give yellow solid. The yellow solid was purified by column chromatography to give SMCC-DM1 (3a). ?H NMR (500 MHz, CDC13): & 0.80 (m, 3H), 1.02 (m, 3H), 1.20-2.00 (m, 25H), 2.014.00 (m, 36H), 4.12 (s, 311), 4.27 (m, 1H), 4.78 (d, 1H), 5.30 (s, 1H), 5.39 (m, 1H),5.7 (m, 1H) , 6.26 ( s, 1H), 6.43 (m, 1H), 6.606.71 (m, 2H), 6.83( d, 111). MS(M+l): 1073. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | In aq. phosphate buffer; N,N-dimethyl acetamide; for 2h;pH 8; | DM1 (25 mg, 0.034 mmol) and 4-(2-aminoethyl)aniline (compound 15) (9.22 mg, 0.068 mmol) were dissolved in a solution of dimethylacetamide (1.0 mE) and 100 mM potassium phosphate pH 8 buffer (1.0 mE) to which was added compound 17 (11.32mg, 0.034 mmol). Afier 2 hr the mixture was purified by preparative HPEC method 3. Fractions containing pure product were combined in a flask then the flask was cooled in a dry/ice acetone bath until the solvent was frozen. Then the sample was lyophilized to give 26mg (92percent yield) of desired product. Mass spectrum (M+K) calcd for C55H73C1N60135, 1131.4. found 1131.3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
400 mg | With triethylamine; In N,N-dimethyl-formamide; at 20℃; | Cibacron blue amine was prepared as described in Example 1. A vial was charged with the Cibacron blue amine (450 mg, 0.51 mg) and DMF was added (9 mL). Succinimidyl- 4-[N-maleimidomethyl]cyclohexane-l-carboxylate (204 mg, 0.61 mmol) and triethylamine (0.37 mL, 2.6 mmol) were added and the solution was stirred overnight at RT. The crude solution was concentrated to dryness and the crude product was subjected to a separation. Separation performed using a Waters Xbridge CI 8 5muiotaeta column (water/ACN/0.1percent TFA gradient). 400 mg of product at 74percent purity was obtained. Structural identity was confirmed by HRMS. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc-?E-Amc-Ahx-dGlu-dGlu-dGlu-Gly-Tyr-Gly-Gly-Gly-Cys-NH2 (SEQ ID NO: 12) was assembled on the resin using standard Fmoc peptide synthesis. Fmoc-?E stands for Fmoc(Glu)-OtBu where the gamma-carboxyl group is unprotected. After removal of the last Fmoc on the assembled peptide, the resin is washed with DMF, methanol and chloroform. Then, a chloroform solution containing a 5-fold excess of H-Glu(OtBu)-OtBu mixed with 2.5 eq (with respect to H-Glu(OtBu)-OtBu) of diisopropylethylamine was prepared. The solution was then added slowly to 0.25 eq (with respect to H-Glu(OtBu)-OtBu) triphosgene over 10 minutes at room temperature. The presumed product of this reaction is an isocyanate derivative of H-Glu(OtBu)-OtBu. After a 15 minute incubation to allow for isocyanate formation, the reaction is mixed with the ?E-Amc-Ahx-Glu-Glu-Glu-Gly-Tyr-Gly-Gly-Gly-Cys-NH2 (SEQ ID NO: 13) on a rink amide resin pre-swollen in chloroform with 2.5 eq of diisopropylethylamine. After 30 minutes of mixing, a Ninhydrin test was administered to test for residual free-amine on the resin. Once the reaction is complete, the resin is washed and the complete peptide product is cleaved. The product elutes at 12.4 minutes on analytical HPLC column with a 10percent-95percent gradient in 40 minutes (flow rate 0.8 ml/min; A: water with 0.1percent TFA; B: acetonitrile). The mass was verified by MALDI/TOF mass spectrometry?Calculated: 1452.6 (C60H88N14O26S). found m/z: 1453.4 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The peptide Fmoc-Ahx-dGlu-dGlu-dGlu-G was assembled on a Wang resin. The three glutamates (dGlu) are of D-isoform. Peptide synthesis was carried out manually by Fmoc chemistry with HCTU (2-(6-Chloro-1H-benzotriazole-1-yl)-1,1,3,3-tetramethylaminium hexafluorophosphate) activation. Generally, peptides were synthesized at a 0.01 mmol scale starting from the C-terminal amino acid on solid support. Fmoc-deprotection at each cycle was carried out using 20percent piperidine in DMF. Coupling reactions were carried out using 3.3 eq. of Fmoc-amino acids in DMF activated with 3.3 eq. of HCTU and 5 equivalents of diisopropylethylamine (DIPEA) in DMF. These steps were repeated each time with an amino acid added. After the peptide sequence was built on the resin, the Fmoc group of the N-terminal amino acid was deprotected. Coupling of 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC) to the N-terminal amine group was achieved with 3.3 equivalents of SMCC in DMF. Coupling of Cys-C(O)-Glu was performed using 3.3 equivalents of Cys-C(O)-Glu in DMF after coupling SMCC to the peptide. The final peptide resin was washed with DMF and then dichloromethane and dried. Cleavage and deprotection were carried out using TFA/water/triisopropylsilane (950:25:25) for 1 h, the resin was removed by filtration and washed with TFA. The combined filtrate was dried under nitrogen. The synthesized peptide was precipitated by the addition of diethyl ether and collected by centrifugation. The cleaved peptide was purified by preparative HPLC. The products were ascertained by high resolution matrix-assisted laser desorption/ionization mass (MALDI-MS) spectra. Then Fmoc was deprotected followed by coupling of SMCC and Cys-C(O)-Glu. The product has retention time of 11.9 minutes on analytical HPLC with 0-55percent gradient over 45 minutes (flow rate 1 ml/min; A: 10 mM triethylammonium acetate TEAA, pH 7.0; B was acetonitrile.) The mass was verified by MALDI/TOF mass spectrometry?Calculated: 1088.4 (C44H64N8O22S). Found m/z: 1089.4 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc-?E-Amc-Ahx-dGlu-dGlu-dGlu-Tyr-Lys-NH2 (SEQ ID NO: 14) was assembled on the resin using standard Fmoc peptide synthesis. The glutamates (dGlu) are D-isomers. Fmoc-?E stands for Fmoc(Glu)-OtBu where the gamma-carboxyl group is unprotected. The last Fmoc on the assembled peptide is then removed by 20percent piperidine. Then a chloroform solution containing 5 eq. of H-Glu(OtBu)-OtBu mixed with 2.5 eq (with respect to H-Glu(OtBu)-OtBu) of diisopropylethylamine was prepared. The solution was then added slowly to 0.25 eq (with respect to H-Glu(OtBu)-OtBu) triphosgene in chloroform over 10 minutes at room temperature. After a 15 minute incubation to allow for isocyanate formation, the reaction is mixed with the ?E-Amc-Ahx-Glu-Glu-Glu-Gly-Tyr-Gly-Gly-Gly-Cys-NH2 (SEQ ID NO: 13) on a rink amide resin pre-swollen in chloroform with 2.5 eq of diisopropylethylamine. After 30 minutes of mixing, a Ninhydrin test was administered to test for residual free-amine on the resin. The reaction was repeated if needed. Once the reaction is complete, the resin is washed and the complete peptide product is cleaved. To couple the purified peptide E?EAmc-Ahx-EEEYK(Bn-NOTA)-NH2 (SEQ ID NO: 15) with SCN-Bn-NOTA (Macrocyclics), E?EAmc-Ahx-dEdEdEYK (SEQ ID NO: 16) was dissolved in DMF at a concentration of 25 mg/mL and an equimolar amount of SCN-Bn-NOTA was dissolved in DMSO at a concentration of 200 mg/mL. After mixing the above DMF and DMSO solutions of the reactants, DIPEA was added to concentration of 2percent v/v. The reaction was monitored by HPLC and allowed to proceed up to 2 hours. Then, glacial acetic acid equivolume to DIPEA is added to stop the reaction. The final product was E?EAmc-Ahx-dGlu-dGlu-dGlu-Tyr-Lys(Bn-NOTA)-NH2 (compound 4) (SEQ ID NO: 8) The product elutes at 14.8 min on an analytical column with a 10percent-90percent gradient in 45 minutes with a flow rate of 0.8 ml/min (A: water with 0.1percent TFA; B: acetonitrile). The mass was verified by MALDI/TOF mass spectrometry?Calculated: 1699.7. found m/z: 1700.7 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 2h; | [0121] 1. General procedure to prepare exemplary sugar-MCCa compounds (0199) [0122] The amine substrates (Globo H-pantyl amine, SSEA-3-pantyl amine, or SSEA-4-pantyl amine), MCCa-OSu and DIPEA were mixed in DMF at ambient temperature. The reaction crude was stirred for 2 hours. After reaction completed assessed by TLC, monitoring, the reaction was then cooled, neutralized, and quenched by water. The resulted mixture was then added on a pad of RPC18 gel for purification. After chromatography purification through RPC18 gel, the collected fractions were concentrated by rota-evaporator and high-vacuum system to afford the expected sugar-MCCa compound as white solid. The yield is around 65-80percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Trifluoroacetic Acid/N-(2-aminoethyl)-4-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)cyclohexanecarboxamide (1:1) The title compound was prepared by classical methods of peptide chemistry from commercially available 1-[(4-[(2,5-dioxopyrrolidin-1-yl)oxy]carbonyl}cyclohexyl)methyl]-1H-pyrrole-2,5-dione and tert-butyl (2-aminoethyl)carbamate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25 mg | A solution of 84.5 mg (0.115 mmol) of tert-butyl (8-((6-(4-((2-aminoethyl)carbamoyl)benzyl)-5,6,7,8-tetrahydro-1,6-naphthyridin-3-yl)carbamoyl)-4-(dipropylcarbamoyl)-3H-benzo[b]azepin-2-yl)carbamate from step F above, 2,5-dioxopyrrolidin-1-yl 4-((2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)methyl)cyclohexane-1-carboxylate (38.3 mg, 0.115 mmol), and Hunig's base (0.040 mL, 0.229 mmol) in DCM (2.5 mL) was stirred at room temperature for 16 h. The reaction mixture was concentrated to dryness and the residue was purified by reverse phase column chromatography (ISCO Gold C18 100 g, 5-70% MeCN in water gradient, no TFA). The desired fractions were pooled and concentrated to provide 79 mg of the desired product as a yellow solid which was subsequently dissolved in 2.5 mL of DCM at room temperature and then treated with TFA (500 muL, 6.49 mmol). After 1h, the reaction mixture was concentrated, the residue dried in vacuo, neutralized with saturated NaHCO3, and purified by reverse phase column chromatography (ISCO Gold C18 100 g; 5-60% MeCN in water gradient, no TFA). The main fractions were pooled and concentrated. The residue was lyophilized from MeCN/water to afford 25 mg of the desired product as an off-white solid. 1H NMR (CD3OD) delta 8.67 (d, J=2.5 Hz, 1H), 7.91 (d, J=2.5 Hz, 1H), 7.80 (d, J=8.0 Hz, 1H), 7.68 (d, J=2.5 Hz, 1H), 7.55 (dd, J=2.0, 8.0 Hz, 1H), 7.53 (d, J=8.0 Hz, 2H), 7.45 (d, J=8.0 Hz, 1H), 6.89 (s, 1H), 6.77 (s, 2H), 4.57 (s, 1H), 3.81 (s, 2H), 3.49-3.38 (m, 8H), 3.00 (m, 2H), 2.90 (m, 2H), 2.84 (m, 1H), 2.11 (m, 1H), 1.88 (m, 1H), 1.70-1.58 (m, 8H), 1.39 (m, 2H), 1.0-0.89 (m, 10H). LCMS (M+H)=856.8. | |
25 mg | A solution of 84.5 mg (0.115 mmol) of tert-butyl (8-((6-(4-((2-aminoethyl)carbamoyl)benzyl)- 5,6,7,8-tetrahydro-l,6-naphthyridin-3-yl)carbamoyl)-4-(dipropylcarbamoyl)-3H-benzo[b]azepin- 2-yl)carbamate from step F above, 2,5-dioxopyrrolidin-l-yl 4-((2, 5-dioxo-2,5-dihydro- 1H- pyrrol-l-yl)methyl)cyclohexane-l-carboxylate (38.3 mg, 0.115 mmol), and Hunig's base (0.040 mL, 0.229 mmol) in DCM (2.5 mL) was stirred at rt for 16 h. The reaction mixture was concentrated to dryness and the residue was purified by reverse phase column chromatography (ISCO Gold C18 100 g, 5-70% MeCN in water gradient, no TFA). The desired fractions were pooled and concentrated to provide 79 mg of the desired product as a yellow solid which was subsequently dissolved in 2.5 mL of DCM at rt then treated with TFA (500 pL, 6.49 mmol). After lh, the reaction mixture was concentrated, the residue dried in vacuo, neutralized with saturated NaHC03, and purified by reverse phase column chromatography (ISCO Gold Cl 8 100 g; 5-60% MeCN in water gradient, no TFA). The main fractions were pooled and concentrated. The residue was lyophilized from MeCN/water to afford 25 mg of the desired product as an off- white solid. 1H NMR (CD3OD) d 8.67 (d, J=2.5Hz, 1H), 7.91 (d, J=2.5Hz, 1H), 7.80 (d, J= 8.0Hz, 1H), 7.68 (d, J=2.5Hz, 1H), 7.55 (dd, J=2.0, 8.0Hz, 1H), 7.53 (d, J=8.0Hz, 2H), 7.45 (d, J=8.0Hz, 1H), 6.89 (s, 1H), 6.77 (s, 2H), 4.57 (s, 1H), 3.81 (s, 2H), 3.49-3.38 (m, 8H), 3.00 (m, 2H), 2.90 (m, 2H), 2.84 (m, 1H), 2.11 (m, 1H), 1.88 (m, 1H), 1.70-1.58 (m, 8H), 1.39 (m, 2H), 1.0-0.89 (m, 10H). LCMS (M+H) = 856.8. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In N,N-dimethyl-formamide; at 20℃; for 2h; | 4-(3-(l-Aminoethyl)-4-nitrophenoxy)butanoic acid (268 mg, 10 mmol) was dissolved in dry DMF (10 ml). To the solution was added succinimidyl 4-[N- maleimidomethyl]cyclohexane-l-carboxylate (334 mg, 10 mmol) and triethylamine (1.0 m). The reaction mixture was stirred at room temperature for 2 hours, and DMF and triethylamine were removed under vacuum. The residue was recrystallized with EtOAc and hexanes to yield 4-(3-(l-(4-((2,5-dioxo-2,5-dihydro-lH-pyrrol-l-yl)methyl)cyclohexane-l- carboxamido)ethyl)-4-nitrophenoxy)butanoic acid as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃; for 4h; | General procedure: A solution containing 58 mg (0.10 mmol) of Compound 1.35 and 30 mg (0.1 mmol) of 2,5- dioxopyrrolidin-l-yl 6-(2,5-dioxo-2,5-dihydro-lH-pyrrol-l-yl)hexanoate in 2 mL of DCM was treated with 0.07 mL (0.4 mmol) of DIPEA and the reaction was stirred for 4h at room temperature. The reaction mixture was purified without work-up by reverse phase chromatography to provide 28 mg of Compound-Linker 2.3 as a white solid. 1H NMR (CD3OD) d 8.81 (d, J=2.3Hz, 1H), 8.19 (d, J=l.9Hz, 1H), 8.08 (t, J=2. lHz, 1H), 7.90 (m, 2H), 7.64 (dd, J=L9, 8. lHz, 1H), 7.25-7.15 (m, 5H), 7.06 (s, 1H), 6.77 (s, 2H), 4.62-4.57 (m, 3H), 4.39 (s, 2H), 3.45-3.40 (m, 4H), 3.39 (t, J=7.5Hz, 2H), 3.10 (m, 1H), 2.90 (m, 1H), 2.16 (t, J=7.5Hz, 2H), 1.70 (m, 4H), 1.50 (m, 4H), 1.10 (m, 4H), 0.95 (m, 6H). LCMS (M+H) = 775.8. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | General procedure: Thesynthesisofcompoundswascarriedoutaccordingtothemethoddescribedin[77,78].A portionof3mmolofanaminoacidisaddedtoasolutionofmaleicanhydride(0.3g,3mmol)in4mL ofDMF,stirredfor2hatroomtemperature.Aftercompletedissolution,atatemperatureof0C,0.43 g(3.75mmol)ofN-hydroxysuccinimide(NHS)and1.24g(6mmol)ofdicyclohexylcarbodiimide (DCC)areaddedtothesolution.Thereactionmassisstirredinanicebath5-10minandthen incubatedatroomtemperatureforaday.Theformationofawhiteprecipitateofdicyclohexylureais observed.Theprecipitateiswashedwith20mLofwaterand20mLofmethylenechloride.The organiclayeristreatedwith10mLofwater,extractedwithmethylenechloride,then10mLof5% NaHCO3areaddedandextractedwithmethylenechloride(theprocedureiscarriedoutthreetimes). TheorganiclayerwasdriedoverNa2SO4,thesolutionwasfilteredandthesolventwasevaporatedat the reduced pressure. The residue was purified by column chromatography on SiO2 with CHCl3/MeOH(from1:0to100:1)asaneluenttogivecompounds4-6. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine In dichloromethane at 20℃; for 0.75h; Inert atmosphere; | 45 [Example 45] Preparation of compound L-5 A homogeneous solution of N-succinimidyl 4-(N-maleimidomethyl)cyclohexane-carboxylate (85.5 mg, 0.26 mmol) and L-2 (75.3 mg, 0.28 mmol) in dry DCM at room temperature under N2 atmosphere was treated with DIPEA (44.5 uL, 0.26 mmol, 1 eq) and stirred to room temperature for 45 minutes. The reaction was diluted with DCM (32 mL) and washed with 1N HCl (30 mL), brine (30 mL), dried over anhydrous Na2SO4, filtered, and concentrated in vacuo. The residue was purified by prep-HPLC to give compound L-5 (70.8 mg, 61 %, mixture 9 mg) as a white gum. |
Tags: 64987-85-5 synthesis path| 64987-85-5 SDS| 64987-85-5 COA| 64987-85-5 purity| 64987-85-5 application| 64987-85-5 NMR| 64987-85-5 COA| 64987-85-5 structure
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Precautionary Statements-General | |
Code | Phrase |
P101 | If medical advice is needed,have product container or label at hand. |
P102 | Keep out of reach of children. |
P103 | Read label before use |
Prevention | |
Code | Phrase |
P201 | Obtain special instructions before use. |
P202 | Do not handle until all safety precautions have been read and understood. |
P210 | Keep away from heat/sparks/open flames/hot surfaces. - No smoking. |
P211 | Do not spray on an open flame or other ignition source. |
P220 | Keep/Store away from clothing/combustible materials. |
P221 | Take any precaution to avoid mixing with combustibles |
P222 | Do not allow contact with air. |
P223 | Keep away from any possible contact with water, because of violent reaction and possible flash fire. |
P230 | Keep wetted |
P231 | Handle under inert gas. |
P232 | Protect from moisture. |
P233 | Keep container tightly closed. |
P234 | Keep only in original container. |
P235 | Keep cool |
P240 | Ground/bond container and receiving equipment. |
P241 | Use explosion-proof electrical/ventilating/lighting/equipment. |
P242 | Use only non-sparking tools. |
P243 | Take precautionary measures against static discharge. |
P244 | Keep reduction valves free from grease and oil. |
P250 | Do not subject to grinding/shock/friction. |
P251 | Pressurized container: Do not pierce or burn, even after use. |
P260 | Do not breathe dust/fume/gas/mist/vapours/spray. |
P261 | Avoid breathing dust/fume/gas/mist/vapours/spray. |
P262 | Do not get in eyes, on skin, or on clothing. |
P263 | Avoid contact during pregnancy/while nursing. |
P264 | Wash hands thoroughly after handling. |
P265 | Wash skin thouroughly after handling. |
P270 | Do not eat, drink or smoke when using this product. |
P271 | Use only outdoors or in a well-ventilated area. |
P272 | Contaminated work clothing should not be allowed out of the workplace. |
P273 | Avoid release to the environment. |
P280 | Wear protective gloves/protective clothing/eye protection/face protection. |
P281 | Use personal protective equipment as required. |
P282 | Wear cold insulating gloves/face shield/eye protection. |
P283 | Wear fire/flame resistant/retardant clothing. |
P284 | Wear respiratory protection. |
P285 | In case of inadequate ventilation wear respiratory protection. |
P231 + P232 | Handle under inert gas. Protect from moisture. |
P235 + P410 | Keep cool. Protect from sunlight. |
Response | |
Code | Phrase |
P301 | IF SWALLOWED: |
P304 | IF INHALED: |
P305 | IF IN EYES: |
P306 | IF ON CLOTHING: |
P307 | IF exposed: |
P308 | IF exposed or concerned: |
P309 | IF exposed or if you feel unwell: |
P310 | Immediately call a POISON CENTER or doctor/physician. |
P311 | Call a POISON CENTER or doctor/physician. |
P312 | Call a POISON CENTER or doctor/physician if you feel unwell. |
P313 | Get medical advice/attention. |
P314 | Get medical advice/attention if you feel unwell. |
P315 | Get immediate medical advice/attention. |
P320 | |
P302 + P352 | IF ON SKIN: wash with plenty of soap and water. |
P321 | |
P322 | |
P330 | Rinse mouth. |
P331 | Do NOT induce vomiting. |
P332 | IF SKIN irritation occurs: |
P333 | If skin irritation or rash occurs: |
P334 | Immerse in cool water/wrap n wet bandages. |
P335 | Brush off loose particles from skin. |
P336 | Thaw frosted parts with lukewarm water. Do not rub affected area. |
P337 | If eye irritation persists: |
P338 | Remove contact lenses, if present and easy to do. Continue rinsing. |
P340 | Remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P341 | If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P342 | If experiencing respiratory symptoms: |
P350 | Gently wash with plenty of soap and water. |
P351 | Rinse cautiously with water for several minutes. |
P352 | Wash with plenty of soap and water. |
P353 | Rinse skin with water/shower. |
P360 | Rinse immediately contaminated clothing and skin with plenty of water before removing clothes. |
P361 | Remove/Take off immediately all contaminated clothing. |
P362 | Take off contaminated clothing and wash before reuse. |
P363 | Wash contaminated clothing before reuse. |
P370 | In case of fire: |
P371 | In case of major fire and large quantities: |
P372 | Explosion risk in case of fire. |
P373 | DO NOT fight fire when fire reaches explosives. |
P374 | Fight fire with normal precautions from a reasonable distance. |
P376 | Stop leak if safe to do so. Oxidising gases (section 2.4) 1 |
P377 | Leaking gas fire: Do not extinguish, unless leak can be stopped safely. |
P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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