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CAS No. : | 73930-39-9 | MDL No. : | MFCD07995722 |
Formula : | C9H12ClN | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | ABUWJOHYZALSMF-UHFFFAOYSA-N |
M.W : | 169.65 | Pubchem ID : | 194548 |
Synonyms : |
|
Num. heavy atoms : | 11 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.33 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 1.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 48.46 |
TPSA : | 26.02 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -5.96 cm/s |
Log Po/w (iLOGP) : | 0.0 |
Log Po/w (XLOGP3) : | 1.93 |
Log Po/w (WLOGP) : | 2.27 |
Log Po/w (MLOGP) : | 2.1 |
Log Po/w (SILICOS-IT) : | 2.22 |
Consensus Log Po/w : | 1.7 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 2.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.45 |
Solubility : | 0.608 mg/ml ; 0.00359 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.1 |
Solubility : | 1.35 mg/ml ; 0.00794 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.82 |
Solubility : | 0.256 mg/ml ; 0.00151 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.0 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | With sodium azide; sulfuric acid In chloroform | 1-Phenylcyclopropa ne carboxylic acid(1) is reacted with sodium azide and sulfuric acid in CHCl3 to yield 1-phenylcyclopropanamine (2). 1-Phenylcyclopropanamine is then reacted with 2-mesitylenesulfonyl chloride in chloroform under basic conditions to yield the protected derivative (3), N-(I- phenylcyclopropyl)mesitylenesulfonamide. N-(I- phenylcyclopropyl)mesitylenesulfonamide (3) is then reacted with N-(4- bromobutyl)phthalimide (4) in DMF with sodium hydride at room temperature overnight, to yield N-(2-mesitylenesulfonyl)-N-(l-phenylcyclopropyl)-4- phthalimidobutylamine (5).[0092] The phthaloyl group is removed from N-(2-mesitylenesulfonyi)-N-(l- phenylcyclopropyl)-4-phthalimidobutylamine (5) by reaction with hydroxylamine hydrochloride in benzene and sodium methoxide in methanol, to produce N-(4- aminobutyl)-N-(l-phenylcyclopropyl)-2-mesitylenesulfonamide (6). The free amino group is then re-protected with 2-mesitylenesulfonyl chloride in 2N NaOH in CHCl3 to give (7), N-(4-(mesitylene-2-sulfonylamino)butyl)-N-(l-phenylcyclopropyl)~2- mesitylenesulfonamide. (7) is then reacted with l,2-bis(mesitylene-2- --> sulfonyloxymethyl)cyclopropane (8) in DMF with sodium hydride at room temperature overnight to yield (9), the tetra-mesitylene-2-sulfonyl- protected derivative of l,2-bis((N-(l-phenylcyclopropyl)-4- aminobutyl)aminomethyl)cyclopropane. The mesitylene protecting groups are then removed using HBr in acetic acid and phenol in methylene chloride to yield 1,2- bis((N-(l-phenylcyclopropyl)-4-aminobutyl)aminomethyl)cyclopropane (CGC-11255; SL-11255). |
51% | Stage #1: With diphenyl phosphoryl azide; triethylamine In toluene for 0.75 h; Reflux Stage #2: With ammonium chloride In water; toluene |
INTERMEDIATE PREPARATION 31 -phenylcyclop hydrochloride.bul.HCITo a solution of 1-phenylcyclopropanecarboxylic acid (8.80 g, 54.3 mmol) in toluene (260 mL) was added diphenylphosphoryl azide (12.12 mL, 56.2 mmol) and Et3N (8.94 mL, 64.1 mmol). The mixture was heated to reflux for 45 min, cooled to room temperature, and quenched with saturated aqueous NH4CI (860 mL). The two phases were separated and the aqueous phase extracted with Et20 (3 x 400 mL). The combined ethereal extracts were washed with brine, dried over MgS04, filtered and concentrated in vacuo to provide the isocyanate as oil. This material was dissolved in Et20 (40 ml.) and concentrated HCI (30 ml.) was added. The resulting mixture was heated on a steam bath for 30 min. Acetone (100 ml.) was added to the mixture and the precipitate was isolated by filtration to provide 1- phenylcyclopropanamine (4.68 g, 51 percent) as the hydrochloride salt. 1H NMR (400 MHz, DMSO-de) δ 9.01 (br. s., 3H), 7.37 - 7.48 (m, 4H), 7.30 - 7.37 (m, 1 H), 1 .38 - 1.46 (m, 2H), 1.14 - 1.21 (m, 2H); MS (m/z) 133.8 (M+H+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether at -10 - 20℃; for 2 h; Inert atmosphere; Large scale Stage #2: With boron trifluoride diethyl etherate In tert-butyl methyl ether at 15 - 20℃; Large scale |
Example 4 Synthesis of N-hydroxy-2-((1-phenylcyclopropyl)amino)pyrimidine-5-carboxamide (Compound D) Synthesis of Intermediate 2 A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about -10 to -5° C. under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5° C. The reaction mixture was allowed to warm to 15-20° C. for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15° C. The reaction mixture was stirred at 15-20° C. for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30° C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30° C. The reaction mixture was extracted with MTBE (3 L*2) and EtOAc (3 L*2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45° C.) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether at -10 - 20℃; for 2 h; Inert atmosphere Stage #2: at 15 - 20℃; |
Synthesis of Intermediate 2 A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about -10 to -5° C. under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5° C. The reaction mixture was allowed to warm to 15-20° C. for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15° C. The reaction mixture was stirred at 15-20° C. for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30° C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30° C. The reaction mixture was extracted with MTBE (3 L*2) and EtOAc (3 L*2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45° C.) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether at -10 - 20℃; for 2 h; Inert atmosphere Stage #2: With boron trifluoride diethyl etherate In tert-butyl methyl ether at 15 - 20℃; Inert atmosphere Stage #3: With hydrogenchloride In tert-butyl methyl ether at 30℃; Inert atmosphere |
Synthesis of Intermediate 2: A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about -10 to - 5 °C under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5 °C. The reaction mixture was allowed to warm to 15-20 °C for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15 °C. The reaction mixture was stirred at 15-20 °C for 1-2 hr. and stopped when a low level of benzonitrile remained. IN HC1 (2500 ml) was added dropwise while maintaining the inner temperature below 30 °C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30 °C. The reaction mixture was extracted with MTBE (3 L x 2) and EtOAc (3 L x 2), and the combined organic layers were dried with anhydrous Na2S04 and concentrated under reduced pressure (below 45 °C) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HC1 gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether at -10 - 20℃; for 2 h; Inert atmosphere Stage #2: With boron trifluoride diethyl etherate In tert-butyl methyl ether at 15 - 20℃; Inert atmosphere Stage #3: With hydrogenchloride In tert-butyl methyl ether |
0118] A solution of intermediate 1, benzonitrile, (250 g, 1.0 equiv), and Ti(OiPr)4 (1330 mL, 1.5 equiv.) in MBTE (3750 mL) was cooled to about -10 to -5°C under a nitrogen atmosphere. EtMgBr (1610 mL, 3.0 M, 2.3 equiv) was added dropwise over a period of 60 min, during which the inner temperature of the reaction was kept below 5°C. The reaction mixture was allowed to warm to 15-20°C for 1 hr. BF3-ether (1300 mL, 2.0 equiv) was added dropwise over a period of 60 min, while the inner temperature was maintained below 15°C. The reaction mixture was stirred at 15-20°C for 1-2 hr and stopped when a low level of benzonitrile remained. 1N HCl (2500 mL) was added dropwise while maintaining the inner temperature below 30°C. NaOH (20percent, 3000 mL) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30°C. The reaction mixture was extracted with MTBE (3L x 2) and EtOAc (3L x 2) and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45°C) to yield a red oil. MTBE (2500 mL) was added to the oil to give a clear solution and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of intermediate 2. |
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether; benzonitrile at -10 - 20℃; for 2 h; Inert atmosphere Stage #2: With boron trifluoride diethyl etherate In tert-butyl methyl ether; benzonitrile at 15 - 20℃; Stage #3: With hydrogenchloride In tert-butyl methyl ether; water; benzonitrile at 30℃; |
A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MTBE (3750 ml) was cooled to about -10 to -5 °C under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5 °C. The reaction mixture was allowed to warm to 15-20 °C for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15 °C. The reaction mixture was stirred at 15-20 °C for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30 °C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30 °C. The reaction mixture was extracted with MTBE (3 L x 2) and EtOAc (3 L x 2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45 °C) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
143 g | With hydrogenchloride In tert-butyl methyl ether | [0251] A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about −10 to −5° C. under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5° C. The reaction mixture was allowed to warm to 15-20° C. for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15° C. The reaction mixture was stirred at 15-20° C. for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30° C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30° C. The reaction mixture was extracted with MTBE (3 L×2) and EtOAc (3 L×2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45° C.) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
143 g | With hydrogenchloride In tert-butyl methyl ether | A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about −10 to −5° C. under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5° C. The reaction mixture was allowed to warm to 15-20° C. for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15° C. The reaction mixture was stirred at 15-20° C. for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30° C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30° C. The reaction mixture was extracted with MTBE (3 L×2) and EtOAc (3 L×2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45° C.) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
143 g | With hydrogenchloride In tert-butyl methyl ether | A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about -10 to -5° C. under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5° C. The reaction mixture was allowed to warm to 15-20° C. for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15° C. The reaction mixture was stirred at 15-20° C. for 1-2 hr. and stopped when a low level of benzonitrile remained. 1N HCl (2500 ml) was added dropwise while maintaining the inner temperature below 30° C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30° C. The reaction mixture was extracted with MTBE (3*2) and EtOAc (3*2), and the combined organic layers were dried with anhydrous Na2SO4 and concentrated under reduced pressure (below 45° C.) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HCl gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
143 g | Stage #1: With titanium(IV) isopropylate In tert-butyl methyl ether at 10 - 20℃; for 2 h; Inert atmosphere Stage #2: With boron trifluoride diethyl etherate In tert-butyl methyl ether at 15 - 20℃; Stage #3: With hydrogenchloride In tert-butyl methyl ether; water at 30℃; |
A solution of compound 1, benzonitrile, (250 g, 1.0 equiv.), and Ti(OiPr)4 (1330 ml, 1.5 equiv.) in MBTE (3750 ml) was cooled to about -10 to - 5 °C under a nitrogen atmosphere. EtMgBr (1610 ml, 3.0M, 2.3 equiv.) was added dropwise over a period of 60 min., during which the inner temperature of the reaction was kept below 5 °C. The reaction mixture was allowed to warm to 15-20 °C for 1 hr. BF3-ether (1300 ml, 2.0 equiv.) was added dropwise over a period of 60 min., while the inner temperature was maintained below 15 °C. The reaction mixture was stirred at 15-20 °C for 1-2 hr. and stopped when a low level of benzonitrile remained. IN HC1 (2500 ml) was added dropwise while maintaining the inner temperature below 30 °C. NaOH (20percent, 3000 ml) was added dropwise to bring the pH to about 9.0, while still maintaining a temperature below 30 °C. The reaction mixture was extracted with MTBE (3 L x 2) and EtOAc (3 L x 2), and the combined organic layers were dried with anhydrous Na2S04 and concentrated under reduced pressure (below 45 °C) to yield a red oil. MTBE (2500 ml) was added to the oil to give a clear solution, and upon bubbling with dry HC1 gas, a solid precipitated. This solid was filtered and dried in vacuum yielding 143 g of compound 2 |
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