Structure of H-D-1-Nal-OH
CAS No.: 78306-92-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 78306-92-0 |
Formula : | C13H13NO2 |
M.W : | 215.25 |
SMILES Code : | O=C(O)[C@H](N)CC1=C2C=CC=CC2=CC=C1 |
MDL No. : | MFCD00038544 |
InChI Key : | OFYAYGJCPXRNBL-GFCCVEGCSA-N |
Pubchem ID : | 6950505 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 16 |
Num. arom. heavy atoms | 10 |
Fraction Csp3 | 0.15 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 63.01 |
TPSA ? Topological Polar Surface Area: Calculated from |
63.32 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.37 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.15 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.79 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.17 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.01 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.97 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.34 |
Solubility | 9.74 mg/ml ; 0.0452 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.73 |
Solubility | 40.5 mg/ml ; 0.188 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.55 |
Solubility | 0.0609 mg/ml ; 0.000283 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.72 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.7 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: To a flask containing DL-1-Naphthylalanine (1a) (1.0 g, 4.6 mmol), TMSCl (1.51 g, 14 mmol, 3 eq) was added, followed by anhydrous methanol (10 mL). The reaction was allowed to stir at room temperature overnight. Upon completion, the volatiles were removed in vacuo, affording the crude methyl ester hydrochloride (1.34 g). The crude salt was then dissolved in ethyl ether:methanol (7.5:1; 30 mL:4 mL) and cooled to -10 C. Triethylamine (6 mL) was slowly added and the reaction was stirred for one hour at -10 C. After reaction completion, the solution was filtered through a pad of celite to remove Et3N salt, and the filtrate was evaporated in vacuo affording the free base methyl ester (1.14 g). The methyl ester was dissolved in methanol (35 mL) and placed on an ice bath. Sodium borohydride (10 eq) was added portion-wise over 20 min and the reaction was allowed to come to room temperature overnight. The solvent was then evaporated, diluted with H2O (80 mL), and extracted with EtOAc (3 × 100 mL). The combined organic layers were dried over MgSO4, filtrated and concentrated in vacuo affording 2a as a white powder (0.87 g, 94%), which was used without further purification. 1H NMR (400 MHz, CDCl3T) delta8.05 (d, J = 7.0 Hz, 1H), 7.88 (d, J = 9.1 Hz, 1H), 7.77 (d, J = 8.7 Hz,1H), 7.53 (sext, J = 7.6 Hz, 2H), 7.43 (t, J = 7.7 Hz, 1H), 7.36 (d,J = 6.2 Hz, 1H), 3.72 (dd, J = 3.7, 10.6 Hz, 1H), 3.49 (dd, J = 6.6,10.6 Hz, 1H), 3.33 (m, 2H), 2.95 (dd, J = 9.7, 14.8 Hz, 1H). HRMS m/zcalculated for C13H16NO [M+H]+: 202.1232. Found: 202.1227. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With thionyl chloride; In methanol; at 20℃; for 21.0h; | Synthesis Example 85-1: Synthesis of D-3-(1-naphthyl) alanine methylester 1 ml of methanol was cooled to-10C, and 0.091 g of thionyl chloride was gradually added while stirring it. After 10 minutes, 0.04569 g of commercially available <strong>[78306-92-0]D-3-(1-naphthyl)alanine</strong> was added to the solution and the whole was stirred for 21 hours at room temperature, followed by concentrating it under reduced pressure. Then, 12 ml of methanol was added and the solvent was distilled off,these procedureswererepeated twice. The resulting mixture was distributed into a saturated sodiumbicarbonate aqueous solution and chloroform, followed by liquidly separating the mixture. A water layer was extracted with chloroform. An organic layer was dried with anhydrous sodium sulfate and then the solvent was distilled off, consequently 40.3 mg of the above-mentioned compound was obtained as a colorless liquid. MS(FAB,Pos.):m/z=230[M+1]+ 1H-NMR(500MHz,CDCl3):delta=3.14(1H,dd,J=13.9,8.8Hz),3.69(1H,dd,J=1 3.9,4.9Hz),3.91(1H,dd,J=8.8,4.9Hz),7.35(1H,d,6.1Hz),7.42(1H,d d,7.1,1.0Hz),7.48-7.57(2H,m),7.78(1H,d,8.3Hz),7.87(1H,dd,J=8. 1,1.2Hz), 8.09 (1H,d,J=8.5Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With thionyl chloride; In methanol; | Example 85-1 Synthesis of methyl <strong>[78306-92-0]D-3-(1-naphthyl)alanine</strong> Methanol (1 ml) was cooled to -10C and thionyl chloride (0.091 g) was gradually added while stirring. After 10 minutes, commercially available <strong>[78306-92-0]D-3-(1-naphthyl)alanine</strong> (0.04569 g) was added. After stirring for 21 hours at room temperature, the reaction mixture was concentrated under reduced pressure. Methanol (12 ml) was added and the solvent was removed by distillation. The mixture obtained by repeating this procedure twice was fractioned into portions dissolvable into saturated sodium hydrogencarbonate aqueous solution and chloroform. The water layer was extracted with chloroform. The organic layer was dried over anhydrous sodium sulfate. The solvent was removed by distillation to obtain the title compound (40.3 mg) as a colorless liquid. MS(FAB,Pos.):m/z=230[M+1]+ 1H-NMR(500MHz,CDCl3):delta=3.14(1H,dd,J=13.9,8.8Hz),3.69(1H,dd, J=13.9,4.9Hz),3.91(1H,dd,J=8.8,4.9Hz),7.35(1H,d,6.1Hz),7.42 (1H,dd,7.1,1.0Hz),7.48-7.57(2H,m),7.78(1H,d,8.3Hz),7.87(1H,dd,J=8.1,1.2Hz),8.09(1H,d,J=8.5Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With chiral stationary phase including isopropyl-functionalized CF6; In methanol; acetic acid; triethylamine; acetonitrile; at 0℃;Purification / work up; | In addition to the foregoing, numerous other chromatographic separations using a column bonded with a CSP including a derivatized cyclofructan residue were carried out. Tables 5-9 list some additional examples of chromatographic separations using a column bonded with a CSP of the present invention. AU examples of chromatographic separations using columns bonded with CSPs of the present invention were carried out using the following experimental conditions and procedures.|0132| The high performance liquid chromatography (HPLC) column packing system was composed of an air driven fluid pump (HASKEL, DSTV- 122), an air compressor, a pressure regulator, a low pressure gauge, two high-pressure gauges (10,000 and 6,000 psi), a slurry chamber, check valves, and tubings. The CSPs were slurry packed into a 25 cm x 0.46 cm (inner diameter, I. D.) stainless steel column.|0133| The HPLC system was an Agilent 1 100 system (Agilent Technologies, Palo Alto,CA), which consisted of a diode array detector, an autosampler, a binary pump, a temperature- controlled column chamber, and Chemstation software. All chiral analytes were dissolved in ethanol, methanol, or other appropriate mobile phases, as indicated. For the LC analysis, the injection volume and flow rate were 5 muL and 1 mL/min, respectively. Separations were carried out at room temperature (~20 0C) if not specified otherwise. The wavelengths of UV detection were 195, 200, 210, and 254 nm. The mobile phase was degassed by ultrasonication under vacuum for 5 min. Each sample was analyzed in duplicate. Three operation modes (the normal phase mode, polar organic mode, and reversed phase mode) were tested, unless indicated otherwise. In the normal phase mode, heptane with ethanol or isopropanol was used as the mobile phase. In some cases, trifluoroacetic acid (TFA) was used as an additive, as indicated. The mobile phase of the polar organic mode was composed of acetonitrile/methanol and small amounts of acetic acid and triethylamine. Water/acetonitrile or acetonitrile/acetate buffer (20 mM, pH = 4.1 ) was used as the mobile phase in the reversed-phase mode.|0134| Two different supercritical fluid chromatographic instruments were used. One was a Berger SFC unit with an FCM 1200 flow control module, a TCM 2100 thermal column module, a dual pump control module, and a column selection valve. The flow rate was 4 mL/min. The cosolvent was composed of methanol/ethanol/isopropanol = 1 : 1 : 1 and 0.2% diethylamine (DEA). The gradient mobile phase composition was 5% cosolvent hold during 0- 0.6 min, 5-60% during 0.6-4.3 min, 60% hold during 4.3-6.3 min, 60%-5% during 6.3-6.9 min, and 5% hold during 6.9-8.0 min. The other SFC system was a Jasco (MD, USA) system comprised of an autosampler unit (AS-2059-SF Plus), a dual pump module (PU-2086 Plus), a column thermostat module (CO-2060 Plus), a UV/Vis detector (UV-2075 Plus), and a back pressure regulator module (SCH-Vch-BP). Unless otherwise specified, the mobile phase was composed of CCVmethanol (0.1 % TFA or 0.1% diethylamine). The flow rate was 3 mL/min.|0135| For the calculations of chromatographic data, the "dead time" to was determined by the peak of the refractive index change due to the sample solvent or determined by injecting l ,3,5-tri-/e/-/-butylbenzene in the normal phase mode. |