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CAS No. : | 90905-33-2 | MDL No. : | MFCD07186434 |
Formula : | C6H6N2O | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | IJBONYUNKRDIFC-UHFFFAOYSA-N |
M.W : | 122.12 | Pubchem ID : | 3160970 |
Synonyms : |
|
Num. heavy atoms : | 9 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.17 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 32.39 |
TPSA : | 42.85 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.0 cm/s |
Log Po/w (iLOGP) : | 1.12 |
Log Po/w (XLOGP3) : | 0.07 |
Log Po/w (WLOGP) : | 0.6 |
Log Po/w (MLOGP) : | -0.7 |
Log Po/w (SILICOS-IT) : | 1.48 |
Consensus Log Po/w : | 0.51 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.07 |
Solubility : | 10.4 mg/ml ; 0.0854 mol/l |
Class : | Very soluble |
Log S (Ali) : | -0.52 |
Solubility : | 36.6 mg/ml ; 0.299 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.94 |
Solubility : | 1.4 mg/ml ; 0.0115 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.07 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | With sodium tetrahydroborate In methanol at 0 - 15℃; for 3 h; | To a mixture of 2-methylpyrimidine-5-carbaldehyde (8 g, 66 mmol, compound 44b) in MeOH (100 mL) was added NaBH4 (7.5 g, 197 mmol) at 0 °C, and the resulting reaction mixture was stirred at 15°C for 3 hrs. Then the reaction mixture was quenched by saturated NH4C1 solution (30 mL), extracted by ethyl acetate (20 mL) three times. The separated organic layer was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by column chromatography to afford (2-methylpyrimidin-5-yl)methanol (4.1 g, 51percent, compound 44c) as a white solid. |
39% | at 0 - 20℃; for 1 h; | A solution of 2-methyl-pyrimidine-5-carbaldehyde (5 g, 41 mmol) in MeOH (100 mL) was added NaBH4 (2.3 g, 61.5 mmol) at 0° C. in portions and the resulting mixture was stirred at room temperature for 1 h. The solvent was removed under reduced pressure to give the remains, which was suspended in H2O (20 mL) and extracted with EtOAc (5×50 ml). The organic layer was dried over Na2SO4 and concentrated to afford the title compound (2 g, yield: 39percent). 1H NMR (CDCl3 400 MHz): δ8.64 (s, 2H), 4.72 (s, 2H), 2.73 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
10 g | With sodium In ethanol for 5 h; Reflux | To 500 mL of EtOH was added sodium (12 g, 0.50 mol) in portions at room temperature and the resulting mixture was stirred until the sodium was dissolved completely. To a suspension of the previously prepared salt (60 g, 0.17 mol) and acetamidine hydrochloride (17.4 g, 0.19 mol) in EtOH (2.5 L) was added the above solution at room temperature and the resulting mixture was heated to reflux for 5 h. After filtration, the solvent was removed under reduced pressure to give the remains, which was suspended in H2O (200 mL) and extracted with DCM (3 mL×100). The organic layer was washed with brine, dried over Na2SO4 and concentrated. The crude product was purified by column chromatography on silica gel (petroleum ether: EtOAc=5:1 to 2:1) to afford 2-methyl-pyrimidine-5-carbaldehyde (10 g, yield: 50percent). 1H NMR (CDCl3 400 MHz): δ10.10 (s, 1H), 9.07 (s, 2H), 2.84 (s, 3H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In N,N-dimethyl-formamide; | Step E 1-(2-Methyl-pyrimidin-5-yl)-7-(5,6,7,8-tetrahydro-[1,8]naphthyridin-2-yl)-hept-1-en-3-one (1-7) To a solution of 1-6 (5.5 g, 16.2 mmol), <strong>[90905-33-2]5-formyl-2-methylpyrimidine</strong> (1-6a, 1.8 g, 14.7 mmol; for preparation, see J. Heterocyclic Chem., 28, 1281 (1991)) in 40 mL DMF was added K2CO3(4.07 g, 32 mmol). The mixture was stirred at ambient temperature for 15 hr, and concentrated to a paste. The residue was diluted with water, extracted with ethyl acetate, and dried over magnesium sulfate. Following concentration, the residue was chromatographed on silica gel (70 chloroform/25 ethyl acetate/5 methanol) to give 1-7 as a white solid. Rf=0.20 (silica, 70 chloroform/20 ethyl acetate/10 methanol). 1H NMR (400 MHz, CDCl3) delta 8.80 (s, 2H), 7.44 (d, 1H, J=16 Hz), 7.05 (d, 1H, J=7 Hz), 6.81 (d, 1H, J=16 Hz), 6.35 (d, 1H, J=7 Hz), 4.72 (br s, 1H), 3.39 (m, 2H), 2.69 (s, 3H), 2.64 (m, 4H), 2.58 (m, 2H), 1.91 (m, 2H), 1.74 (m, 4H). | |
With K2CO3; In N,N-dimethyl-formamide; | Step E 1-(2-Methyl-pyrimidin-5-yl)-7-(5,6,7,8-tetrahydro-[1,8]naphthyridin-2-yl)-hept-1-en-3-one (1-7) To a solution of 1-6 (5.5 g, 16.2 mmol), <strong>[90905-33-2]5-formyl-2-methylpyrimidine</strong> (1-6a, 1.8 g, 14.7 mmol; for preparation, see J. Heterocyclic Chem., 28, 1281 (1991)) in 40 mL DMF was added K2CO3 (4.07 g, 32 mmol). The mixture was stirred at ambient temperature for 15 hr, and concentrated to a paste. The residue was diluted with water, extracted with ethyl acetate, and dried over magnesium sulfate. Following concentration, the residue was chromatographed on silica gel (70 chloroform/25 ethyl acetate/5 methanol) to give 1-7 as a white solid. Rf=0.20 (silica, 70 chloroform/20 ethyl acetate/10 methanol). 1H NMR (400 MHz, CDCl3) delta8.80(s, 2H), 7.44 (d, 1H, J=16Hz), 7.05 (d, 1H, J=7Hz), 6.81 (d, 1H, J=16Hz), 6.35 (d, 1H, J=7Hz), 4.72 (br s, 1H), 3.39 (m, 2H), 2.69 (s, 3H), 2.64 (m, 4H), 2.58 (m, 2H), 1.91 (m, 2H), 1.74 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
10 g | With sodium; In ethanol; for 5h;Reflux; | To 500 mL of EtOH was added sodium (12 g, 0.50 mol) in portions at room temperature and the resulting mixture was stirred until the sodium was dissolved completely. To a suspension of the previously prepared salt (60 g, 0.17 mol) and acetamidine hydrochloride (17.4 g, 0.19 mol) in EtOH (2.5 L) was added the above solution at room temperature and the resulting mixture was heated to reflux for 5 h. After filtration, the solvent was removed under reduced pressure to give the remains, which was suspended in H2O (200 mL) and extracted with DCM (3 mL×100). The organic layer was washed with brine, dried over Na2SO4 and concentrated. The crude product was purified by column chromatography on silica gel (petroleum ether: EtOAc=5:1 to 2:1) to afford 2-methyl-pyrimidine-5-carbaldehyde (10 g, yield: 50percent). 1H NMR (CDCl3 400 MHz): delta10.10 (s, 1H), 9.07 (s, 2H), 2.84 (s, 3H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
27.7 g (61%) | With sodium hydroxide; In tetrahydrofuran; | Step A 7-[6-(4-Methoxy-benzylamino)-pyridin-2-yl]-1-(2-methyl-pyrimidin-5-yl)-hept-1-en-3-one (16-1) To a solution of 6-7 (42.8 g, 102 mmol) and <strong>[90905-33-2]2-methyl-pyrimidine-5-carbaldehyde</strong> (12.45 g, 102 mmol) in THF (250 mL) at 0° was added 4M NaOH (26.7 mL, 107 mmol) dropwise. After 15 minutes the ice bath was removed and the mixture stirred for an additional 10 minutes. The solution was diluted with water, extracted with ethyl acetate, and dried (Na2SO4). Following concentration, the residue was triturated with ether to give 27.7 g (61percent) of 16-1 as a white solid. 1H NMR (400 MHz, CDCl3) 8.78 (s, 2H), 7.33 (m, 4H), 6.85 (m, 3H), 6.46 (d, J=7.1 Hz, 1H), 6.19 (d, J=8.3 Hz, 1H), 4.80 (br s, 1H), 4.39 (d, J=5.6 Hz, 2H), 3.80 (s, 3H), 2.78 (s, 3H), 2.67 (m, 4H), 1.76 (m, 4H). MS (M++H) 417.0. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With potassium carbonate; In N,N-dimethyl-formamide; | Step F 7-(2,3-Dihydro-1H-pyrrolo[2,3-b]pyridin-6-yl)-1-(2-methyl-pyrimidin-5-yl)-hept-1-en-3-one (23-8) To a solution of 23-7 (0.49 g, 1.5 mmol) and <strong>[90905-33-2]2-methyl-pyrimidine-5-carbaldehyde</strong> (0.183 g, 1.5 mmol) in 15 mL DMF was added K2CO3 (0.310 g, 2.25 mmol). The mixture was stirred at ambient temperature for 2 hr and concentrated to a paste. The residue was purified by PCTLC (0-10percent MeOH/CH2Cl2) which provided 0.400 g (83percent yield) of 23-8. 1H NMR (400 MHz, CDCl3) delta 8.79 (s, 2H), 7.42 (d, 1H, J=16.4 Hz), 7.18 (m, 1H), 6.81 (d, 1H, J=16.4 Hz), 6.38 (m, 1H), 4.39 (br s, 1H), 3.60 (m, 2H), 3.02 (m, 2H), 2.77 (s, 3H), 2.70 (d, 2H), 2.62 (d, 2H), 1.74 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In tetrahydrofuran; | Step B [8-(2-Methyl-pyrimidin-5-yl)-6-oxo-oct-7-enyl]-carbamic acid tert-butyl ester (24-3) A solution of 24-2 (3.13 g, 9.28 mmol), potassium carbonate (1.75 g, 12.6 mmol), and <strong>[90905-33-2]2-methyl-pyrimidine-5-carbaldehyde</strong> (1.04 g, 8.51 mmol) in THF (20 mL) was warmed to 40° C. for 5 h. The mixture was diluted with water and extracted four times with ether. The combined organics were washed with brine and dried (Na2SO4). Purification via silica chromatography (hexane/ethyl acetate) afforded the title compound 24-3 (1.67 g). 1H NMR (CDCl3, 400 MHz) delta 8.80 (s, 2H), 7.46 (d, 1H, J=16.3 Hz), 6.83 (d, 1H, J=16.3 Hz), 4.55 (s, 1H), 3.13 (m, 2H), 2.78 (s, 3H), 2.68 (t, 2H, J=7.3 Hz), 1.71 (m, 2H), 1.53 (m, 2H), 1.44 (s, 9H), 1.38 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
49% | (ii) A suspension of the above perchlorate salt (14.8 g) and acetamidine hydrochloride (4.0 g) in methanol (200 ml) was stirred at 40° C. during the gradual addition of a solution of sodium (1.0 g) in methanol(50 ml). After 3 hours the solution was neutralized with acetic acid and evaporated under reduced pressure. The residue was diluted with water (50 ml) and extracted with chloroform (2*100 ml). The chloroform extracts were dried and evaporated to give 2 -methylpyrimidine-5-carboxaldehyde (2.5 g, 49percent). The product was characterized by proton nuclear magnetic resonance spectroscopy and the spectrum is recorded in Table 2 below. The mono-substituted pyrimidine-5-carboxaldehydes of formula V listed in Table 2 below were prepared from {2-[(dimethylamino)methylene]propanediylidene}bis-[dimethylammonium perchlorate] and the appropriate amidine hydrochloride following the procedure described above for the preparation of 2-methylpyrimidine-5 -carboxaldehyde. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | With sodium tetrahydroborate; In methanol; at 0 - 15℃; for 3h; | To a mixture of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (8 g, 66 mmol, compound 44b) in MeOH (100 mL) was added NaBH4 (7.5 g, 197 mmol) at 0 °C, and the resulting reaction mixture was stirred at 15°C for 3 hrs. Then the reaction mixture was quenched by saturated NH4C1 solution (30 mL), extracted by ethyl acetate (20 mL) three times. The separated organic layer was dried over sodium sulfate, filtered and concentrated in vacuo. The residue was purified by column chromatography to afford (2-methylpyrimidin-5-yl)methanol (4.1 g, 51percent, compound 44c) as a white solid. |
39% | With methanol; sodium tetrahydroborate; at 0 - 20℃; for 1h; | A solution of <strong>[90905-33-2]2-methyl-pyrimidine-5-carbaldehyde</strong> (5 g, 41 mmol) in MeOH (100 mL) was added NaBH4 (2.3 g, 61.5 mmol) at 0° C. in portions and the resulting mixture was stirred at room temperature for 1 h. The solvent was removed under reduced pressure to give the remains, which was suspended in H2O (20 mL) and extracted with EtOAc (5×50 ml). The organic layer was dried over Na2SO4 and concentrated to afford the title compound (2 g, yield: 39percent). 1H NMR (CDCl3 400 MHz): delta8.64 (s, 2H), 4.72 (s, 2H), 2.73 (s, 3H). |
With methanol; sodium tetrahydroborate; at 0℃; for 0.5h; | B) (2-Methylpyrimidin-5-yl)methanolA solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (6.48 g, 53.1 mmol) in methanol (320 mL) was cooled to 0° C. and treated with sodium tetrahydroborate (2.9 g, 77 mmol). After 30 min, the reaction was treated with H2O (50 mL) and extracted with EtOAc (250 mL.x.15). The organic layers were combined and dried over MgSO4 and concentrated to yield a white solid. |
A solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (7.5 g, 0.058 mol) in methanol (370 mL, 9.1 mol) was cooled to 0 0C and treated with sodium tetrahydroborate (3.4 g, 0.090 mol). After 30 min, the reaction was quenched with eq H2O (200 mL) and extracted with ethyl acetate. The organic layer was dried over MgSO4 and concentrated to give the title compound as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
B) 1-(2-methylpyrimidin-5-yl)ethanolTo a stirred solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (5.00 g, 38.9 mmol) in tetrahydrofuran (85 mL) was slowly added 33 muL of 1.4 M methylmagnesium bromide solution in tetrahydrofuran at 0° C. The mixture was stirred at room temperature for 1 hour and then quenched with water (50 mL) and extracted with EtOAc (3.x.200 mL). The combined organic layers were dried over sodium sulfate and concentrated in vacuo. The residue was purified by silica gel chromatography (0-100percent EtOAc/hexane) to afford a colorless oil. | ||
B) 1 -(2-methylpyrimidin-5-yl)ethanol[00305] To a stirred solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (5.00 g, 38.9 mmol) in tetrahydrofuran (85 mL) was slowly added 33 mL of 1.4 M methylmagnesium bromide solution in tetrahydrofuran at 0 0C. The mixture was stirred at room temperature for 1 hour and then quenched with water (50 mL) and extracted with EtOAc (3 x 200 mL). The combined organic layers were dried over sodium sulfate and concentrated in vacuo. The residue was purified by silica gel chromatography (0-100percent EtOAc/hexane) to afford a colorless oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium tris(acetoxy)borohydride; acetic acid; In 1,2-dichloro-ethane; at 50℃; | (b) 6-((3S,4S)-4-methyl-1 -f(2-methylpyrimidin-5-vnmethylipyrrolidin-3-yll-1 - ftetrahvdro-2H-pyran-4-yl)-1 ,5-dihvdro-4H-pyrazolof3.4-dipyrimidin-4-oneSi) <n="104"/>To a solution of 6-[(3S,4S)-4-methylpyrrolidin-3-yl]-1-(tetrahydro-2H- pyran-4-yl)-1H-pyra2olo[3,4-d]pyrimidin-4(5H)-one hydrogen chloride (493 mg) in 1,2-dichloroethane (1OmL) was added acetic acid (174 mg), 2- methylpynmidine-5-carbaldehyde (236 mg) and sodium triacetoxy borohydnde (635 mg) The reaction mixture was heated at 50°C overnight The reaction mixture was concentrated onto silica gel and purified by CombiFlash chromatography to provide the title compound (146 mg) 400 MHz 1H NMR (CDCI3) delta 863 (s, 2H), 801 (s, 1H), 482-476 (m, 1H), 412-408 (m, 2H), 368 (d, J = 50 Hz, 3H), 364-354 (m, 2H), 328 (t, J = 83 Hz, 1 H), 304 (d, J =99 Hz, 1H), 289-286 (m, 1H), 271 (s, 3H), 266-262 (m, 1H), 249-227 (m, 3H), 197 (t, J= 79 Hz, 1H), 191-183 (m, 2H), 119 (d, J = 705 Hz, 3H) MS (M+H m/z 4102) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium tris(acetoxy)borohydride; acetic acid; In 1,2-dichloro-ethane; at 50℃; | To a solution of 6-[(3S,4S)-4-methylpyrrolidin-3-yl]-1-(tetrahydro-2H-pyran-4-yl)-1H-pyrazolo[3,4-d]pyrimidin-4(5H)-one hydrogen chloride (493 mg) in 1,2-dichloroethane (10 mL) was added acetic acid (174 mg), <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (236 mg) and sodium triacetoxy borohydride (635 mg). The reaction mixture was heated at 50° C. overnight. The reaction mixture was concentrated onto silica gel and purified by CombiFlash chromatography to provide the title compound (146 mg). 400 MHz 1H NMR (CDCl3) delta 8.63 (s, 2H), 8.01 (s, 1H), 4.82-4.76 (m, 1H), 4.12-4.08 (m, 2H), 3.68 (d, J=5.0 Hz, 3H), 3.64-3.54 (m, 2H), 3.28 (t, J=8.3 Hz, 1H), 3.04 (d, J=9.9 Hz, 1H), 2.89-2.86 (m, 1H), 2.71 (s, 3H), 2.66-2.62 (m, 1H), 2.49-2.27 (m, 3H), 1.97 (t, J=7.9 Hz, 1H), 1.91-1.83 (m, 2H), 1.19 (d, J=7.05 Hz, 3H). MS: (M+H m/z 410.2). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | With iron(III) chloride hexahydrate; In N,N-dimethyl-formamide; at 90℃; for 14h; | Example 26: l-{l-[9-Methyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]piperidin-4-yl}- l,3-dihydro-2H-benzimidazol-2-one Compoundl-(l-r9-Methyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yllpiperidin-4-yl)-1.3-dihvdro- 2H-benzimidazol-2-one[00230] To a solution of l-(l-(5-amino-6-(methylamino)pyrimidin-4-yl)piperidin-4-yl)- lH-benzo[d]imidazol-2(3H)-one (300 mg, 0.88 mmol) in anhydrous DMF (5 mL) were added <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (108 mg, 0.88 mmol) and Iron (III) chloride hexahydrate (0.88 g, 0.24 mmol). The dark brown solution was heated to 90 °C for 14 hour in an open air vessel. The reaction mixture was cooled to room temperature and poured over ice (5 g). The resulting mixture was extracted with ethyl acetate (50 mL), the organic layer was washed with brine (10 mL), and dried over MgS04. The solution was filtered, and concentrated under reduced pressure. The resulting solids were triturated with 15 mL of diethyl ether (15 mL) for 30 min. The precipitate was collected by vacuum filtration to give 201 mg (51 percent yield) of the title compound. NMR (400MHz, DMSO-d6): 5 10.86 (s, 1H), 9.16 (s, 2H), 8.33 (s, 1H), 7.18 - 7.1 1 (m, 1H), 6.98 - 6.87 (m, 3H), 4.55 (t, lH), 3.86 (s, 3H), 2.71 (s, 3H), 2.34 (dd, 2H), 1.84 (d, 2H); MS (EI) for C23H23N90: 442.3 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With hydroxylamine hydrochloride; sodium carbonate; In methanol; water; at 30℃; for 0.5h; | Step-2: 2-Methyl-pyrimidine-5-carbaldehvde oxime:To a mixture of 2-methyl-5-formyl-pyrimidine (180 gm) and hydroxylamine hydrochloride (128 gm) in 50percent v/v aqueous methanol (3600 ml) was added sodium carbonate (94 gm). The reaction mixture was stirred at 30°C for 0.5 h. The resulting suspension was cooled and filtered at -10°C to provide single isomer of title compound in 1 13.5 gm quantity (56percent) as a solid.H'NMR: (DMSO-de) delta 1 1.64 (s, 1H), 8.83 (s, 2H), 8.14 (s, 1H), 2.60 (s, 3H).Further processing of the filtrate such as evaporation and salt removal, provided a mixture of isomers in 51 gm quantity which can be used for the next reaction. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | Preparation 4: 2-Bromomethyl-5-isoxazol-3-yl-pyrimidine:Step- 1 : 2-Methyl-5-formyl-pyrimidine:To a mixture of vinamidium diperchlorate salt (310 gm, prepared as per procedure described in Collection Czechoslov Chem. Commun. Vol. 30, 1965) and acetamidine hydrochloride (106 gm) in actonitrile (2.5 L) at 30°C was added w/v 50percent aqueous sodium hydroxide (96.8 gm dissolved in 97 ml water) solution drop wise over a period of 2 h under stirring. The suspension was stirred for 3 h and pH of the reaction mixture was adjusted to 7 by addition of acetic acid (~ 147 ml). The solid was filtered and washed with acetonitrile (750 ml). The filtrate was evaporated under vacuum to provide a residue. The residue was stirred with water (750 ml) and the mixture was extracted with dichloromethane (300 ml X 5). The layers were separated and organic layer was evaporated to provide title compound in 52 gm quantity (52percent) as a low melting solid.H'NMR: (DMSO-de) delta 1 1.08 (bs, 1H), 10.08 (s, 1H), 9.09 (s, 2H), 2.69 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | 152. (+)-2- 3,4-trans)-4-methyl-l-g2-methylpyrimidin-5- yl)methyl)pyrrolidin-3-yl)-7-ftetrahvdro-2H-pyran-4-yl)imidazo[5,l- f] ri,2,41triazin-4(3H)-one [1111] To a stirred solution of (-)-2-((3,4-trans)-4-methylpyrrolidin-3-yl)-7- (tetrahydro-2H-pyran-4-yl)imidazo[5,l- J[l,2,4]triazin-4(3H)-one (150 mg, 0.49 mmol) in MeOH (10 mL) was added <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (78 mg, 0.64 mmol) at room temperature and stirred for 2 h under argon atmosphere. To the resulting solution was added NaCNBH3 (93 mg, 1.48 mmol) and stirring was continued for another 8 h at room temperature. The volatiles were evaporated under reduced pressure. The residue was diluted with water and extracted with CH2C12 (2 x 50 mL). Combined organic layer was dried over sodium sulphate, filtered and concentrated in vacuo to obtain the crude product. The crude material was purified by silica gel column chromatography to afford (+)-2-((3,4-trans)-4-methyl-l-((2- methylpyrimidin-5-yl)methyl)pyrrolidin-3-yl)-7-(tetrahydro-2H-pyran-4- yl)imidazo[5,l- J[l,2,4]triazin-4(3H)-one (50 mg, 31percent) as an off-white solid. 1H- NMR (DMSO-d6, 400 MHz): delta 11.52 (bs, 1H), 8.62 (s, 2H), 7.65 (s, 1H), 3.96-3.92 (m, 2H), 3.72-3.67 (m, 1H), 3.62-3.59 (m, 1H), 3.54-3.47 (m, 2H), 3.42-3.38 (m, 1H), 2.94-2.85 (m, 4H), 2.66-2.65 (m, 1H), 2.63 (s, 3H), 2.28-2.24 (m, 1H), 1.89-1.85 (m, 4H), 1.09 (d, 3H); Mass (ESI): 410 [M++l]; LC-MS: 97.36percent; 410.4 (M++l); (column; Eclipse XDB C-18, (150x4.6 mm, 5.0mu); RT 5.74 min. 0.05percent TFA (Aq): ACN; 1.0 ml/min); UPLC (purity): 99percent; (column; Acquity UPLC HSS-T3, 100x2.1 mm, 1.8mu; RT 2.92 min. 0.025percent TFA (Aq): ACN; 0.30 ml/min; Chiral HPLC: 100percent, R, = 15.87 min (Chiralpak IA, 250 x 4.6mm, 5mu; mobile phase (A) 0.1percent DEA in n- Hexane (B) DCM:MeOH (80:20) (A: B : 80:20); flow Rate: 1.00 mL/min); Optical rotation [a]D2°: + 5.0° (c = 0.25, DCM). TLC: 10percent MeOH/DCM (Rf: 0.5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | With methanesulfonic acid; potassium carbonate; In isopropyl alcohol; at 20℃; for 23h; | To a mixture of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (1.0 g, 8.2 mmol) and triisopropoxymethane (2.3 g, 12 mmol) in isopropanol (15 ml) was added methanesulfonic acid (0.079 g, 0.053 ml, 0.819 mmol). The reaction was stirred at room temperature for 23 hours. Potassium carbonate (1.132 g, 8.19 mmol) was added and the mixture was filtered and the solution was concentrated in vacuo. The crude mixture was purified by flash chromatography to yield 5-(diisopropoxymethyl)-2-methylpyrimidine (536 mg, 29percent) [0357] 1H NMR (500 MHz, CDCl3) delta 8.71 (s, 2H), 5.60 (s, 1H), 3.93 (dt, J=12.3, 6.1 Hz, 2H), 2.74 (s, 3H), 1.21 (dd, J=14.8, 6.1 Hz, 12H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With toluene-4-sulfonic acid; In tetrahydrofuran; toluene; at 65℃; for 4.5h; | To a solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (0.808 g, 6.62 mmol) and propane-1,3-diol (1.01 g, 0.868 ml, 13.2 mmol) in toluene (7.6 ml) and THF (1.9 ml) was added p-toluenesulfonic acid (11 mg, 0.066 mmol). The reaction was heated at 65° C. for 4.5 hours. The reaction mixture was then poured into H2O (50 mL) and extracted with AcOEt (3×50 mL). The combined organic phases were washed with brine, dried over MgSO4 and concentrated in vacuo to yield 5-(1,3-dioxan-2-yl)-2-methylpyrimidine (620 mg, 3.44 mmol, 52percent) used for next step without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32% | With ammonium hydroxide; potassium hydroxide; In ethanol; at 20℃; | 2-Methylpyrimidine-5-carbaldehyde (0.27 g, 2.21 mmol) was dissolved in EtOH (40 mL), and 4-acetylpyridine (0.57 mL, 0.62 g, 5 mmol) was added followed by crushed solid KOH (0.33 g, 5.90 mmol) after which the solution turned red. Aqueous NH3 (25percent in water, 13.9 mL, 90 mmol) was added dropwise and the mixture stirred overnight at ambient temperature. A yellow precipitate formed which was separated by filtration, washed with water (3 * 7 mL) and ethanol (3 * 7 mL) and recrystallized from chloroform/methanol. Compound 4 was obtained as a white solid (0.26 g, 0.78 mmol, 32percent). Decomposition > 260 °C. 1H NMR (500 MHz, CDCl3) ?/ppm 9.02 (s, 2H, HC4), 8.83 (m, 4H, HA2), 8.09 (m, 4H, HA3), 8.01 (s, 2H, HB3), 2.87 (s, 3H, HMe); 13C{1H} NMR (126 MHz, CDCl3) ?/ppm 169.3 (CC2), 155.9 (CA4), 155.14 (CC4), 150.8 (CB4) 150.7 (CA2), 145.3 (CB2), 128.5 (CC5), 121.1 (CA3), 118.3 (CB3), 25.9 (CMe); IR (solid, nu/cm-1) 3077 (w), 3033 (w), 1609 (m), 1594 (s), 1569 (m), 1549 (m), 1544 (m), 1539 (m), 1531 (m), 1464 (s), 1461 (s), 1456 (s), 1447 (m), 1432 (m), 1429 (m), 1423 (m), 1404 (m), 1377 (m), 1373 (m), 1368 (m), 1247 (m), 1064 (m), 1028 (m), 999 (m), 995 (m), 895 (m), 851 (m), 844 (m), 835 (s), 791 (m), 739 (m), 731 (m), 670 (m), 664 (m), 649 (m), 637 (s), 629 (s), 619 (m), 616 (m), 604 (m), 597 (m), 582 (m), 570 (m), 564 (m), 543 (m), 541 (m), 535 (m), 528 (m), 523 (m), 519 (m), 513 (s), 506 (s), 502 (s). UV-Vis (MeCN, 2.5 * 10-5 M) lambda/nm (epsilon/dm3 mol-1 cm-1) 247 (44 458), 312 (7856). ESI-MS m/z 326.3 [M+H]+ (calc. 326.1). Found: C, 69.04; H, 4.75; N, 20.22; required for C20H15N5.H2O C, 69.96; H, 4.99; N, 20.40. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 15h; | To a solution of 4-6 (5.5 g, 16.2 mmol), <strong>[90905-33-2]5-formyl-2-methylpyrimidine</strong> (4-6a, 1.8g, 14.7 mmol; for preparation, see J. Heterocyclic Chem., 28, 1281 (1991)) in 40 mL DMF wasadded K2C03 (4.07 g, 32 mmol). The mixture was stirred at ambient temperature for 15 hr, and concentrated to a paste. The residue was diluted with water, extracted with ethyl acetate, and dried over magnesium sulfate. Following concentration, the residue was chromatographed on silica gel (70 chloroform / 25 ethyl acetate / 5 methanol) to give 4-7 as a white solid. Rf= 0.20 (silica, 70 chloroform / 20 ethyl acetate / 10 methanol).?H NIVIR (400 MFIz, CDC13) oe 8. 80(s, 2H), 7.44 (d, 1H, J16Hz), 7.05 (d, 1H, J=7Hz), 6.81 (d,1H, J16Hz), 6.35 (d, 1H, J=7Hz), 4.72 (br s, 1H), 3.39 (m, 2H), 2.69 (s, 3H), 2.64 (m, 4H), 2.58(m, 2H), 1.91 (m, 2H), 1.74 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With iron(III) chloride hexahydrate; In N,N-dimethyl-formamide; at 80℃; for 18h; | 4-chloro-N2-methylpyridine-2, 3-diamine (840 mg, 5.33 mmol) and iron (III) chloride hexahydrate (360 mg, 1.33 mmol) were dissolved in DMF (26 ml). 2-Methylpyrimidine-5-carbaldehyde (716 mg, 5.86 mmol) was then added and the reaction was allowed to stir vigorously at 80 open to air for 18 h The reaction mixture was then diluted with 3:. 1 chloroform: IPA and washed with water The combined organic layers. were washed with brine, dried over MgSO 4, and concentrated in vacuo while loading onto silica gel Purification by column chromatography. (silica gel, eluting with a gradient of 0 -60percent 3: 1 EtOAc: EtOH in hexanes) gave 7-chloro -3-ethyl-2- (2- methylpyrimidin-5-yl) -3H-imidazo [4, 5-b] pyridine (Intermediate IV). MS ESI calc'd. for C 13 H 13 ClN 5 [M + 1]+ 274; found 274. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
26.7% | With sodium tris(acetoxy)borohydride; In dichloromethane; at 20℃; | To a solution of Intermediate 47 (200 mg, 0.292 mmol) in DCM (8 mL) was added 2 methylpyrimidine-5-carbaldehyde (42.8 mg, 0.350 mmol) and NaBH(OAc)3 (155 mg 0.73 mmol). After stirring at room temperature overnight, The mixture was (0937) concentrated to give a residue which was purified by prep-HPLC (Waters 2767/Qda, Column: Waters Xbridge 19* 150mm lOum, Mobile Phase A: H20 (0.1percentNH4OH), B: ACN) to yield Compound 90 (35 mg, 26.7percent yield) as a light yellow solid. NMR CD3OD (400 MHz): delta 8.66 (s, 2H), 8.27 (s, 1H), 7.62 (s, 1H), 4.10-3.71 (m, 6H), 3.56 (s, 2H), 2.68 (s, 3H), 2.62-2.33 (m, 6H), 1.89-1.61 (m, 2H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With lithium hydroxide; In tetrahydrofuran; at 20℃; for 72h;Molecular sieve; | To a mixture of 2-methylpyrimidine- 5-carbaldehyde (5.0 g, 40.9 mmol), /ert-butyl diethylphosphonoacetate (11.58 mL, 49.1 mmol), and molecular sieves (4A) (20 g, 189 mmol) in THF (100 mL) was added lithium hydroxide (1.176 g, 49.1 mmol). The mixture was stirred at rt for 72 h and then filtered. The filter cake washed with THF. The combined organic layers were concentrated in vacuo and the residue was dissolved in EtOAc and washed with H20. The combined organic layers were dried over Na2S04, filtered, concentrated, and the residue subjected to flash column chromatographpy (ethyl acetate/hexanes 1 : 1) to afford /er/-butyl (E)-3-(2-methylpyrimidin-5-yl)acrylate 86H (7.04 g, 32.0 mmol, 78 percent yield) as a white solid. NMR (400 MHz, CHLOROFORM-d) delta 8.75 (br s, 2H), 7.48 (br d, J=16.1 Hz, 1H), 6.47 (br d, J=16.1 Hz, 1H), 2.75 (br s, 3H), 1.53 (br s, 9H). MS (ESI) tm zi : 221.08(M+H)+. |
58% | With sodium t-butanolate; In tetrahydrofuran; at 20℃; for 24h; | Intermediate 23: To a solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (5 g, 40.9 mmol) in THF (45 mL) was added fert-butyl 2-(diethoxyphosphoryl)acetate (1 1.54 mL, 49.1 mmol) and sodium fert-butoxide (3.93 g, 40.9 mmol). The reaction was stirred at rt for 24 h. The reaction was diluted with water and extracted with ethyl acetate. The combine organic layers were washed with brine, dried over sodium sulfate, filtered, and concentrated under reduced pressure. The crude product was recystallized from ethyl acetate/hexanes (hot to cold) to afford tert-butyl (£)-3-(2-methylpyrimidin-5-yl)acrylate (5.2 g, 24 mmol, 58 percent yield) as an off white solid. NMR (500 MHz, chloroform-d)delta 8.77 (s, 2H), 7.55 - 7.44 (m, 1H), 6.57 - 6.39 (m, 1H), 2.85 - 2.72 (m, 3H), 1.61 - 1.47 (m, 9H)). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With ammonium acetate; In ethanol; at 80℃; for 4h; | Int-12A. 3-Amino-3-(2-methylpyrimidin-5-yl)propanoic acid: A mixture of commercially available <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (1.00 g, 8.19 mmol), malonic acid (1.28 g, 12.3 mmol) and ammonium acetate (1.58 g, 20.5 mmol) in EtOH (6.55 mL) were heated to 80 C for 4 h. The reaction mixture was cooled to rt and the precipitate was collected by filtration, washed with cold EtOH and dried under vacuum to yield Int- 12A (1.08 g, 73%) as an off- white solid which was used in the next step without further purification. NMR (500 MHz, D20) delta 8.79 (s, 2H), 4.75 - 4.73 (m, 1H), 3.01 - 2.92 (0451) (m, 1H), 2.90 - 2.82 (m, 1H), 2.70 (s, 3H). HPLC retention time (Method 2): 0.168 mia; LCMS (ES): m/z 182.1 [M+H]+. |
With ammonium acetate; In ethanol; at 80℃; for 4h; | A mixture of commercially available <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (1.00 g, 8.19 mmol), malonic acid (1.28 g, 12.3 mmol) and NH4OAc (1.58 g, 20.5 mmol) in EtOH (6.55 mL) was (0255) heated to 80 C for 4 h. After cooling to room temperature, the precipitate was collected by filtration, washed with cold EtOH and dried under vacuum to yield Int-12A (1.08 g, 73%) as an off-white solid which was used in the next step without further purification. (0256) NMR (500MHz, D2O) delta 8.79 (s, 2H), 4.75 - 4.73 (m, 1H), 3.01 - 2.92 (m, 1H), 2.90 - 2.82 (m, 1H), 2.70 (s, 3H). HPLC retention time (Method 2): 0.168 min.; LCMS (ES): (0257) m/z 182.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70 mg | With Oxone; In water; N,N-dimethyl-formamide; at 20℃; for 2h;Inert atmosphere; | To a stirred solution of N1-cyclopropyl-5-fluorobenzene-1,2-diamine Int-1 (200 mg, 1.20 mmol) in DMF (2 mL) and water (0.2 mL) under an inert atmosphere was added <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (176 mg, 1.44 mmol) and oxone (364 mg, 2.40 mmol) at room temperature. The reaction mixture was stirred at room temperature for 2 h. After consumption of starting material (by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2*20 mL). The combined organic extracts were dried over anhydrous Na2SO4 and concentrated under reduced pressure. The crude material was purified by silica gel column chromatography (eluent: 2percent MeOH/CH2Cl2) to afford 1-cyclopropyl-6-fluoro-2-(2-methylpyrimidin-5-yl)-1H-benzo[d]imidazole Ex. 20 (70 mg, 0.26 mmol, 22percent) as an off white solid. ?H NMR (400 MHz, CD3OD): oe 9.27 (s, 2H), 7.69 (dd, J=8.8, 4.8 Hz, 1H), 7.48 (dd, J=8.9, 2.4 Hz, 1H), 7.16-7.07 (m, 1H), 3.81-3.75 (m, 1H), 2.81 (s, 3H), 1.27-1.19 (m, 2H), 0.83-0.78 (m, 2H). EC-MS: m/z 269 [M+H] at 2.24 RT (99.87percentpurity). HPEC: 99.35percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With lithium hydroxide; In tetrahydrofuran;Molecular sieve; | To a solution of <strong>[90905-33-2]2-methylpyrimidine-5-carbaldehyde</strong> (1.0 g, 8.19 mmol) in THF (15 mL) was added 5 g of molecular sieves (4 A) followed by ethyl 2- (diethoxyphosphoryl)acetate (1.967 mL, 9.83 mmol) and LiOH (0.235 g, 9.83 mmol). After stirring overnight at room temperature, the reaction was filtered over CELITE® and the volatiles were removed. The residue was dissolved in EtOAc and sequentially washed with 10percent NaHCC aq solution and brine. The organic layer was dried over anhydrous Na2S04, filtered, and concentrated under reduced pressure. The crude product was purified by flash chromatography (0 to 50percent EtOAc/Hexanes) to give Example 22A (0.841 g, 4.38 mmol, 53percent yield) as a white solid. LCMS (ESI) m/z 193.1 (M+H)+. NMR (400MHz, CDC13) delta 8.79 (s, 1H), 7.61 (d, J = 16.3 Hz, 1H), 7.28 (s, 1H), 6.56 (d, J = 16.3 Hz, 1H), 4.31 (d, J = 7.2 Hz, 2H), 2.79 (s, 3H), 1.37 (t, J = 12 Hz, 3H). |
Tags: 90905-33-2 synthesis path| 90905-33-2 SDS| 90905-33-2 COA| 90905-33-2 purity| 90905-33-2 application| 90905-33-2 NMR| 90905-33-2 COA| 90905-33-2 structure
[ 304693-66-1 ]
2-(Trifluoromethyl)pyrimidine-5-carbaldehyde
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[ 166757-62-6 ]
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[ 120747-84-4 ]
2-Aminopyrimidine-5-carbaldehyde
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[ 1588441-19-3 ]
2-Aminopyrimidine-5-carbaldehyde hydrate
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[ 5194-32-1 ]
2-Methylpyrimidine-5-carboxylic acid
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[ 304693-66-1 ]
2-(Trifluoromethyl)pyrimidine-5-carbaldehyde
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[ 166757-62-6 ]
2-Hydroxypyrimidine-5-carbaldehyde
Similarity: 0.76
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