Structure of SQ109
CAS No.: 502487-67-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
SQ109 is a potent inhibitor of the trypomastigote form of the parasite, with IC50 for cell killing of 50±8 nM.
Synonyms: NSC 722041
4.5
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| CAS No. : | 502487-67-4 |
| Formula : | C22H38N2 |
| M.W : | 330.55 |
| SMILES Code : | C/C(C)=C/CC/C(C)=C/CNCCNC1[C@H]2C[C@H]3C[C@@H]1C[C@H](C3)C2 |
| Synonyms : |
NSC 722041
|
| MDL No. : | MFCD11046358 |
| InChI Key : | JFIBVDBTCDTBRH-REZTVBANSA-N |
| Pubchem ID : | 5274428 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H302 |
| Precautionary Statements: | P280-P305+P351+P338 |
In Vitro:
|
Cell Line
|
Concentration | Treated Time | Description | References |
| Mycobacterium tuberculosis (Mtb) | 100 µM | 1 hour | CYP124 binds and hydroxylates SQ109, producing a monooxygenated product with m/z 347.4 | Int J Mol Sci. 2020 Oct 16;21(20):7683 |
| Human liver microsomes | 10 µM | 10 minutes | Evaluate the metabolic rate of SQ109 in human liver microsomes, showing 58.3% of SQ109 remained after 10 minutes | Br J Pharmacol. 2006 Mar;147(5):476-85 |
| Dog liver microsomes | 10 µM | 10 minutes | Evaluate the metabolic rate of SQ109 in dog liver microsomes, showing 50.8% of SQ109 remained after 10 minutes | Br J Pharmacol. 2006 Mar;147(5):476-85 |
| Mouse liver microsomes | 10 µM | 10 minutes | Evaluate the metabolic rate of SQ109 in mouse liver microsomes, showing 48.4% of SQ109 remained after 10 minutes | Br J Pharmacol. 2006 Mar;147(5):476-85 |
| Rat liver microsomes | 10 µM | 10 minutes | Evaluate the metabolic rate of SQ109 in rat liver microsomes, showing 22.8% of SQ109 remained after 10 minutes | Br J Pharmacol. 2006 Mar;147(5):476-85 |
| Escherichia coli | 15 µM (IC50) | 12 hours | Test the growth inhibitory activity of SQ109 against E. coli, IC50 was 15 μM. | ACS Infect Dis. 2021 Aug 13;7(8):2492-2507 |
| Bacillus subtilis | 16 µM (IC50) | 12 hours | Test the growth inhibitory activity of SQ109 against B. subtilis, IC50 was 16 μM. | ACS Infect Dis. 2021 Aug 13;7(8):2492-2507 |
| Trypanosoma cruzi epimastigotes | 4.6 µM | 120 hours | SQ109 inhibited epimastigotes with an IC50 of 4.6 µM, causing rounding of the cell body and depressions on the cell surface. | Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61 |
| Mycobacterium smegmatis MC2155 | 2.0 μg/ml | 2 weeks | Evaluate the antibacterial activity of SQ109 on M. smegmatis, results showed that SQ109 alone has antibacterial effect on M. smegmatis. | Antimicrob Agents Chemother. 2010 Jul;54(7):2840-6 |
| Mycobacterium tuberculosis H37Rv | 0.5 μg/ml | 2 weeks | Evaluate the antibacterial activity of SQ109, results showed that SQ109 alone has antibacterial effect on H37Rv strain. | Antimicrob Agents Chemother. 2010 Jul;54(7):2840-6 |
| Peritoneal macrophages | 0.39 μg/ml and 0.78 μg/ml | 24 and 48 hours | SQ109 significantly reduces the bacterial burden in macrophages infected with H37Rv, MDR, and XDR strains of M.tb and induces M1 macrophage polarization, promoting protective inflammatory responses. | Commun Biol. 2022 Jul 28;5(1):759 |
| Mycobacterium tuberculosis | 10 µM | 24 hours | To evaluate the transcriptional regulatory effects of SQ109 on Mycobacterium tuberculosis | Antimicrob Agents Chemother. 2018 Jun 26;62(7):e02459-17 |
| Trypanosoma cruzi trypomastigotes | 50 nM | 24 hours | SQ109 was a potent inhibitor of the trypomastigote form with an IC50 of 50 nM and had little effect on red blood cell hemolysis (EC50 ~80 µM). | Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61 |
| THP-1-derived macrophages | 0.5 µM | 3 days | To measure the bactericidal activity of SQ109 against intracellular M. tuberculosis, showing 90% growth inhibition at 0.5 μM and 1-log kill at 4 μM after 3 days of exposure. | Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421 |
| PfNF54 stage IV/V gametocytes | 0.105 µM (IC50) | 48 hours | Evaluation of SQ109 activity against late-stage gametocytes, showing selective inhibition | Nat Commun. 2021 Jan 11;12(1):269. |
| Leishmania mexicana amastigotes (inside J774 macrophages) | 11 nM (IC50) | 48 hours | SQ109 potently inhibits amastigote proliferation in infected macrophages | Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9 |
| Mycobacterium smegmatis | 2.4 µM (IC50) | 48 hours | Test the growth inhibitory activity of SQ109 against M. smegmatis, IC50 was 2.4 μM. | ACS Infect Dis. 2021 Aug 13;7(8):2492-2507 |
| Plasmodium falciparum late-stage gametocytes (LGc, stage IV/V) | 0.14±0.03 µM (IC50) | 48 hours | Evaluate the antimalarial activity of SQ109 against late-stage gametocytes | ACS Infect Dis. 2024 Sep 13;10(9):3358-3367 |
| Plasmodium falciparum immature-stage gametocytes (IGc, stage II/III) | 0.38±0.10 µM (IC50) | 48 hours | Evaluate the antimalarial activity of SQ109 against immature gametocytes | ACS Infect Dis. 2024 Sep 13;10(9):3358-3367 |
| Plasmodium falciparum asexual blood stages (ABS) | 1.58±0.2 µM (IC50) | 48 hours | Evaluate the antimalarial activity of SQ109 against asexual blood stages of malaria parasites | ACS Infect Dis. 2024 Sep 13;10(9):3358-3367 |
| Mycobacterium tuberculosis | 0.52 µM (IC50) | 5 days | Test the growth inhibitory activity of SQ109 against M. tuberculosis, IC50 was 0.52 μM. | ACS Infect Dis. 2021 Aug 13;7(8):2492-2507 |
| Human monocyte-derived macrophages | 1 µM | 5 days | To evaluate the activity of SQ109 against intracellular M. tuberculosis under normoxic and hypoxic conditions, showing 90% inhibition at 1 μM in both conditions. | Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421 |
| RAW 264.7 murine macrophages | 1.56, 3.12, 6.24 µM | 7 days | Evaluate the antimicrobial activity of SQ109 against M. tuberculosis-infected macrophages. SQ109 showed potency and efficacy in inhibiting intracellular M. tuberculosis similar to INH but superior to EMB. | Br J Pharmacol. 2005 Jan;144(1):80-7 |
| Mycobacterium tuberculosis | 16–0.016 mg/L | 7 days | To evaluate the in vitro activity of SQ109 against clinical isolates of MDR-TB and pre-XDR-TB, the results showed MIC90, MIC95, and MIC99 values of 0.25 mg/L, 0.5 mg/L, and 1.0 mg/L, respectively | Ann Clin Microbiol Antimicrob. 2024 Sep 28;23(1):87 |
| J774 macrophages | 5.8 µM (IC50) | 72 hours | SQ109 has little effect on macrophage viability | Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9 |
| Leishmania mexicana promastigotes | 0.53 µM (IC50) | 72 hours | SQ109 inhibits the viability of L. mexicana promastigotes in a dose-dependent manner | Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9 |
| Trypanosoma cruzi amastigotes | 1.2 µM | 96 hours | SQ109 inhibited amastigotes with an IC50 of 1.2 µM and acted synergistically with the antifungal drug posaconazole (FICI of 0.48). | Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61 |
In Vivo:
|
Species
|
Animal Model
|
Administration | Dosage | Frequency | Description | References |
| C57BL/6 mice | M. tuberculosis H37Rv infection model | Oral | 0.1, 10, 25 mg/kg/day | Once daily for 28 days | Evaluate the therapeutic effects of SQ109 in M. tuberculosis-infected mice. SQ109 showed dose-dependent reductions in bacterial load in spleen and lungs, comparable to EMB but less potent than INH. | Br J Pharmacol. 2005 Jan;144(1):80-7 |
| C57BL/6 female mice | Chronic mouse model of TB | Intravenous injection | 10 mg/kg | Daily administration, 5 days/week for 4 or 8 weeks | The combination of SQ109 with INH, RIF, and PZA in the chronic mouse model of TB was more effective in reducing the number of M. tuberculosis in the lungs compared to the standard drug combination | Antimicrob Agents Chemother. 2007 Apr;51(4):1563-5 |
| C57BL/6 mice | Murine model of tuberculosis | Intraperitoneal injection | 10 mg/kg | Daily, starting from the 15th day post-infection until sacrifice | SQ109 treatment significantly reduces the bacterial burden in lungs and spleen, enhances protective immune responses including Th1 and Th17 responses, and promotes M1 macrophage polarization via the p38 MAPK pathway. | Commun Biol. 2022 Jul 28;5(1):759 |
| Rats | Tuberculosis model | Oral | 13 mg/kg | Single dose | Evaluate tissue distribution and elimination of SQ109 in rats, showing the highest radioactivity in the liver, followed by lung, spleen, and kidney | Br J Pharmacol. 2006 Mar;147(5):476-85 |
| Mice | Tuberculosis model | Oral | 25 mg/kg | Once daily, 5 days per week, for 3 months | Evaluate the therapeutic effect of SQ109 in combination with bedaquiline, clofazimine, and pyrazinamide on tuberculosis. Results showed that the BCZS regimen exhibited significant bactericidal activity in Rv0678 mutant-infected mice and performed better than the BCZ regimen in preventing relapse. | Antimicrob Agents Chemother. 2025 Jun 4;69(6):e0001925 |
| Rabbits | Tuberculosis model | Oral | 25 mg/kg | Once daily for 7 days | Test the metabolism and antibacterial activity of SQ109 in a tuberculosis model, found SQ109 is the major species in lung tissue with metabolites showing low activity. | ACS Infect Dis. 2021 Aug 13;7(8):2492-2507 |
| New Zealand white rabbits | Active TB model | Oral | 25 mg/kg | Once daily for 7 days | To characterize the pharmacokinetics of SQ109 and its penetration into lung tissue and lesions, showing significantly higher concentrations in lung and cellular lesions compared to plasma, but lower diffusion into caseous areas. | Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421 |
Clinical Trial:
| NCT Number | Conditions | Phases | Recruitment | Completion Date | Locations |
| NCT01252108 | Helicobacter Pylori Infection | PHASE2 | WITHDRAWN | 2025-08-15 | - |
| NCT01585636 | Tuberculosis | PHASE1 | COMPLETED | 2025-02-07 | Quintiles Phaes 1 Clinical Stu... More >>dy Unit, Lenexa, Kansas, 66219, United States Less << |
Tags: SQ109 | NSC 722041 | SQ 109 | SQ-109 | NSC722041 | NSC-722041 | Parasite | Bacterial | Antibiotic | inhibitor | 502487-67-4 |
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