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Chemical Structure| 502487-67-4 Chemical Structure| 502487-67-4

Structure of SQ109
CAS No.: 502487-67-4

Chemical Structure| 502487-67-4

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SQ109 is a potent inhibitor of the trypomastigote form of the parasite, with IC50 for cell killing of 50±8 nM.

Synonyms: NSC 722041

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Product Details of SQ109

CAS No. :502487-67-4
Formula : C22H38N2
M.W : 330.55
SMILES Code : C/C(C)=C/CC/C(C)=C/CNCCNC1[C@H]2C[C@H]3C[C@@H]1C[C@H](C3)C2
Synonyms :
NSC 722041
MDL No. :MFCD11046358
InChI Key :JFIBVDBTCDTBRH-REZTVBANSA-N
Pubchem ID :5274428

Safety of SQ109

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302
Precautionary Statements:P280-P305+P351+P338

Isoform Comparison

Biological Activity

In Vitro:

Cell Line
Concentration Treated Time Description References
Mycobacterium tuberculosis (Mtb) 100 µM 1 hour CYP124 binds and hydroxylates SQ109, producing a monooxygenated product with m/z 347.4 Int J Mol Sci. 2020 Oct 16;21(20):7683
Human liver microsomes 10 µM 10 minutes Evaluate the metabolic rate of SQ109 in human liver microsomes, showing 58.3% of SQ109 remained after 10 minutes Br J Pharmacol. 2006 Mar;147(5):476-85
Dog liver microsomes 10 µM 10 minutes Evaluate the metabolic rate of SQ109 in dog liver microsomes, showing 50.8% of SQ109 remained after 10 minutes Br J Pharmacol. 2006 Mar;147(5):476-85
Mouse liver microsomes 10 µM 10 minutes Evaluate the metabolic rate of SQ109 in mouse liver microsomes, showing 48.4% of SQ109 remained after 10 minutes Br J Pharmacol. 2006 Mar;147(5):476-85
Rat liver microsomes 10 µM 10 minutes Evaluate the metabolic rate of SQ109 in rat liver microsomes, showing 22.8% of SQ109 remained after 10 minutes Br J Pharmacol. 2006 Mar;147(5):476-85
Escherichia coli 15 µM (IC50) 12 hours Test the growth inhibitory activity of SQ109 against E. coli, IC50 was 15 μM. ACS Infect Dis. 2021 Aug 13;7(8):2492-2507
Bacillus subtilis 16 µM (IC50) 12 hours Test the growth inhibitory activity of SQ109 against B. subtilis, IC50 was 16 μM. ACS Infect Dis. 2021 Aug 13;7(8):2492-2507
Trypanosoma cruzi epimastigotes 4.6 µM 120 hours SQ109 inhibited epimastigotes with an IC50 of 4.6 µM, causing rounding of the cell body and depressions on the cell surface. Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61
Mycobacterium smegmatis MC2155 2.0 μg/ml 2 weeks Evaluate the antibacterial activity of SQ109 on M. smegmatis, results showed that SQ109 alone has antibacterial effect on M. smegmatis. Antimicrob Agents Chemother. 2010 Jul;54(7):2840-6
Mycobacterium tuberculosis H37Rv 0.5 μg/ml 2 weeks Evaluate the antibacterial activity of SQ109, results showed that SQ109 alone has antibacterial effect on H37Rv strain. Antimicrob Agents Chemother. 2010 Jul;54(7):2840-6
Peritoneal macrophages 0.39 μg/ml and 0.78 μg/ml 24 and 48 hours SQ109 significantly reduces the bacterial burden in macrophages infected with H37Rv, MDR, and XDR strains of M.tb and induces M1 macrophage polarization, promoting protective inflammatory responses. Commun Biol. 2022 Jul 28;5(1):759
Mycobacterium tuberculosis 10 µM 24 hours To evaluate the transcriptional regulatory effects of SQ109 on Mycobacterium tuberculosis Antimicrob Agents Chemother. 2018 Jun 26;62(7):e02459-17
Trypanosoma cruzi trypomastigotes 50 nM 24 hours SQ109 was a potent inhibitor of the trypomastigote form with an IC50 of 50 nM and had little effect on red blood cell hemolysis (EC50 ~80 µM). Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61
THP-1-derived macrophages 0.5 µM 3 days To measure the bactericidal activity of SQ109 against intracellular M. tuberculosis, showing 90% growth inhibition at 0.5 μM and 1-log kill at 4 μM after 3 days of exposure. Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421
PfNF54 stage IV/V gametocytes 0.105 µM (IC50) 48 hours Evaluation of SQ109 activity against late-stage gametocytes, showing selective inhibition Nat Commun. 2021 Jan 11;12(1):269.
Leishmania mexicana amastigotes (inside J774 macrophages) 11 nM (IC50) 48 hours SQ109 potently inhibits amastigote proliferation in infected macrophages Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9
Mycobacterium smegmatis 2.4 µM (IC50) 48 hours Test the growth inhibitory activity of SQ109 against M. smegmatis, IC50 was 2.4 μM. ACS Infect Dis. 2021 Aug 13;7(8):2492-2507
Plasmodium falciparum late-stage gametocytes (LGc, stage IV/V) 0.14±0.03 µM (IC50) 48 hours Evaluate the antimalarial activity of SQ109 against late-stage gametocytes ACS Infect Dis. 2024 Sep 13;10(9):3358-3367
Plasmodium falciparum immature-stage gametocytes (IGc, stage II/III) 0.38±0.10 µM (IC50) 48 hours Evaluate the antimalarial activity of SQ109 against immature gametocytes ACS Infect Dis. 2024 Sep 13;10(9):3358-3367
Plasmodium falciparum asexual blood stages (ABS) 1.58±0.2 µM (IC50) 48 hours Evaluate the antimalarial activity of SQ109 against asexual blood stages of malaria parasites ACS Infect Dis. 2024 Sep 13;10(9):3358-3367
Mycobacterium tuberculosis 0.52 µM (IC50) 5 days Test the growth inhibitory activity of SQ109 against M. tuberculosis, IC50 was 0.52 μM. ACS Infect Dis. 2021 Aug 13;7(8):2492-2507
Human monocyte-derived macrophages 1 µM 5 days To evaluate the activity of SQ109 against intracellular M. tuberculosis under normoxic and hypoxic conditions, showing 90% inhibition at 1 μM in both conditions. Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421
RAW 264.7 murine macrophages 1.56, 3.12, 6.24 µM 7 days Evaluate the antimicrobial activity of SQ109 against M. tuberculosis-infected macrophages. SQ109 showed potency and efficacy in inhibiting intracellular M. tuberculosis similar to INH but superior to EMB. Br J Pharmacol. 2005 Jan;144(1):80-7
Mycobacterium tuberculosis 16–0.016 mg/L 7 days To evaluate the in vitro activity of SQ109 against clinical isolates of MDR-TB and pre-XDR-TB, the results showed MIC90, MIC95, and MIC99 values of 0.25 mg/L, 0.5 mg/L, and 1.0 mg/L, respectively Ann Clin Microbiol Antimicrob. 2024 Sep 28;23(1):87
J774 macrophages 5.8 µM (IC50) 72 hours SQ109 has little effect on macrophage viability Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9
Leishmania mexicana promastigotes 0.53 µM (IC50) 72 hours SQ109 inhibits the viability of L. mexicana promastigotes in a dose-dependent manner Antimicrob Agents Chemother. 2016 Sep 23;60(10):6386-9
Trypanosoma cruzi amastigotes 1.2 µM 96 hours SQ109 inhibited amastigotes with an IC50 of 1.2 µM and acted synergistically with the antifungal drug posaconazole (FICI of 0.48). Antimicrob Agents Chemother. 2015 Apr;59(4):1950-61

In Vivo:

Species
Animal Model
Administration Dosage Frequency Description References
C57BL/6 mice M. tuberculosis H37Rv infection model Oral 0.1, 10, 25 mg/kg/day Once daily for 28 days Evaluate the therapeutic effects of SQ109 in M. tuberculosis-infected mice. SQ109 showed dose-dependent reductions in bacterial load in spleen and lungs, comparable to EMB but less potent than INH. Br J Pharmacol. 2005 Jan;144(1):80-7
C57BL/6 female mice Chronic mouse model of TB Intravenous injection 10 mg/kg Daily administration, 5 days/week for 4 or 8 weeks The combination of SQ109 with INH, RIF, and PZA in the chronic mouse model of TB was more effective in reducing the number of M. tuberculosis in the lungs compared to the standard drug combination Antimicrob Agents Chemother. 2007 Apr;51(4):1563-5
C57BL/6 mice Murine model of tuberculosis Intraperitoneal injection 10 mg/kg Daily, starting from the 15th day post-infection until sacrifice SQ109 treatment significantly reduces the bacterial burden in lungs and spleen, enhances protective immune responses including Th1 and Th17 responses, and promotes M1 macrophage polarization via the p38 MAPK pathway. Commun Biol. 2022 Jul 28;5(1):759
Rats Tuberculosis model Oral 13 mg/kg Single dose Evaluate tissue distribution and elimination of SQ109 in rats, showing the highest radioactivity in the liver, followed by lung, spleen, and kidney Br J Pharmacol. 2006 Mar;147(5):476-85
Mice Tuberculosis model Oral 25 mg/kg Once daily, 5 days per week, for 3 months Evaluate the therapeutic effect of SQ109 in combination with bedaquiline, clofazimine, and pyrazinamide on tuberculosis. Results showed that the BCZS regimen exhibited significant bactericidal activity in Rv0678 mutant-infected mice and performed better than the BCZ regimen in preventing relapse. Antimicrob Agents Chemother. 2025 Jun 4;69(6):e0001925
Rabbits Tuberculosis model Oral 25 mg/kg Once daily for 7 days Test the metabolism and antibacterial activity of SQ109 in a tuberculosis model, found SQ109 is the major species in lung tissue with metabolites showing low activity. ACS Infect Dis. 2021 Aug 13;7(8):2492-2507
New Zealand white rabbits Active TB model Oral 25 mg/kg Once daily for 7 days To characterize the pharmacokinetics of SQ109 and its penetration into lung tissue and lesions, showing significantly higher concentrations in lung and cellular lesions compared to plasma, but lower diffusion into caseous areas. Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0002421

Clinical Trial:

NCT Number Conditions Phases Recruitment Completion Date Locations
NCT01252108 Helicobacter Pylori Infection PHASE2 WITHDRAWN 2025-08-15 -
NCT01585636 Tuberculosis PHASE1 COMPLETED 2025-02-07 Quintiles Phaes 1 Clinical Stu... More >>dy Unit, Lenexa, Kansas, 66219, United States Less <<

Protocol

Bio Calculators
Preparing Stock Solutions 1mg 5mg 10mg

1 mM

5 mM

10 mM

3.03mL

0.61mL

0.30mL

15.13mL

3.03mL

1.51mL

30.25mL

6.05mL

3.03mL

Dissolving Methods
Please choose the appropriate dissolution scheme according to your animal administration guide.For the following dissolution schemes, clear stock solution should be prepared according to in vitro experiments, and then cosolvent should be added in turn:

in order to ensure the reliability of the experimental results, the clarified stock solution can be properly preserved according to the storage conditions; The working fluid for in vivo experiment is recommended to be prepared now and used on the same day;

The percentage shown in front of the following solvent refers to the volume ratio of the solvent in the final solution; If precipitation or precipitation occurs in the preparation process, it can be assisted by heating and/or ultrasound.
Protocol 1
Protocol 2

References

 

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