SGI-1027 | DNMT inhibitor

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CAS No. :	1020149-73-8
Formula :	C₂₇H₂₃N₇O
M.W :	461.52
SMILES Code :	O=C(NC1=CC=C(NC2=NC(N)=NC(C)=C2)C=C1)C3=CC=C(NC4=CC=NC5=CC=CC=C45)C=C3
Synonyms :	DNA Methyltransferase Inhibitor II
MDL No. :	MFCD27937047
InChI Key :	QSYLKMKIVWJAAK-UHFFFAOYSA-N
Pubchem ID :	24858111

GHS Pictogram:
Signal Word:	Warning
Hazard Statements:	H302
Precautionary Statements:	P280-P305+P351+P338

DNMT3Acat	0.8 µM (IC50)		To study the inhibitory activity of SGI-1027 against DNMT3Acat	PMC4358266
DNMT1	10 µM (IC50)	2 hours	To study the mechanism of inhibition of DNMT1 by SGI-1027, results showed it as a DNA-competitive and AdoMet non-competitive inhibitor	PMC4358266
DNMT1	10 µM (IC50)	2 hours	To study the mechanism of inhibition of DNMT1 by SGI-1027, results showed it as a DNA-competitive and AdoMet non-competitive inhibitor	PMC4358266
HEK293 cells	10 µM	20 minutes	Evaluate the inhibitory effect of SGI-1027 and its derivatives on Rlig1-AMP, results showed that SGI-1027 and some of its derivatives effectively inhibited Rlig1-AMP activity	PMC11747885
HeLa cells	1 μM	24 hours	To evaluate the effect of SGI-1027 in combination with AH057 on cell cycle in HeLa cells, results showed that the combined treatment increased the proportion of cells in G1 phase.	PMC7476923
HeLa cells	1 μM	24 hours	To evaluate the effect of SGI-1027 in combination with AH057 on apoptosis in HeLa cells, results showed that the combined treatment significantly increased the percentage of apoptotic cells.	PMC7476923
Leukemia KG-1 cells	1-10 μM	24 hours	To test the ability of the compounds to reactivate the luciferase reporter gene controlled by a methylated CMV promoter. Results showed that SGI-1027 induced a 16-fold luciferase expression at 5 μM, but at 10 μM, the signal decreased due to cytotoxicity.	PMC4506529
MDA-MB-231 breast cancer cells	0.9 μM	48 hours	To evaluate cell viability and proliferation, results showed that MC3353 significantly inhibited cell viability and proliferation	PMC6501426
PC-3 prostate cancer cells	0.9 μM	48 hours	To evaluate cell viability and proliferation, results showed that MC3353 significantly inhibited cell viability and proliferation	PMC6501426
RAJI Burkitt’s lymphoma cells	0.4 μM	48 hours	To evaluate cell viability and proliferation, results showed that MC3353 significantly inhibited cell viability and proliferation	PMC6501426
U-937 acute myeloid leukemia cells	0.4 μM	48 hours	To evaluate cell viability and proliferation, results showed that MC3353 significantly inhibited cell viability and proliferation	PMC6501426
HCT116 colon cancer cells	0.5 μM	48 hours	To evaluate antiproliferative activity, results showed that MC3353 significantly inhibited cell proliferation	PMC6501426
HK-2 cells	3.916 μM	48 hours	To evaluate the cytotoxicity of SGI-1027 on renal cancer cells and HK-2 cells, it was found that SGI-1027 inhibited the cell viability of all tested cell lines in a dose-dependent manner	PMC11481186
Caki-1 cells	2.965 μM	48 hours	To evaluate the cytotoxicity of SGI-1027 on renal cancer cells and HK-2 cells, it was found that SGI-1027 inhibited the cell viability of all tested cell lines in a dose-dependent manner	PMC11481186
A-498 cells	1.702 μM	48 hours	To evaluate the cytotoxicity of SGI-1027 on renal cancer cells and HK-2 cells, it was found that SGI-1027 inhibited the cell viability of all tested cell lines in a dose-dependent manner	PMC11481186
786-O cells	1.121 μM	48 hours	To evaluate the cytotoxicity of SGI-1027 on renal cancer cells and HK-2 cells, it was found that SGI-1027 inhibited the cell viability of all tested cell lines in a dose-dependent manner	PMC11481186
Primary osteoblasts	10 μM	48 hours	SGI-1027 alleviated the ferroptotic changes caused by FAC, but not by a GPX4 inactivator RSL3	PMC11609303
Osteoblasts	10 μM	48 hours	SGI-1027 reversed titanium particle (TP)-induced GPX4 repression and ferroptotic changes, restoring GPX4 expression and reducing the lipid peroxidation marker 4-HNE.	PMC11331012
SMB cells	50 nM (IC50)	5 days	Evaluate the effect of SGI-1027 on PrPSc elimination, results showed that SGI-1027 effectively eliminated PrPSc	PMC6804459
ScN2a cells	50 nM (IC50)	5 days	Evaluate the effect of SGI-1027 on PrPSc elimination, results showed that SGI-1027 effectively eliminated PrPSc	PMC6804459
KG-1 acute myeloid leukemia cells	1 μM	5 hours	To evaluate CMV promoter-driven luciferase reporter system, results showed that MC3353 significantly enhanced luciferase expression	PMC6501426
HK2 cells	10 μM	60 hours	Evaluate the restorative effect of SGI-1027 on KLOTHO and NRF2 expression	PMC8761007
N2a cells	1 μM	96 hours	Evaluate the effect of SGI-1027 on prion infection prevention, results showed that SGI-1027 effectively prevented prion infection	PMC6804459
DNMT3Acat	0.8 µM (IC50)		To study the inhibitory activity of SGI-1027 against DNMT3Acat	PMC4358266
HEK293T cells	0-100 µM		SGI-1027 inhibits the interaction between GST-MKK3 and VF-MYC	PMC8456368
MDA-MB-468 triple-negative breast cancer cells	0-50 µM		SGI-1027 reduces MYC protein level and expression of its target genes CDK4 and PD-L1	PMC8456368
HCT116 colon cancer cells	0-50 µM		SGI-1027 inhibits MKK3-MYC protein-protein interaction, reduces MYC protein level and expression of its target genes CDK4 and PD-L1	PMC8456368

Mice	NMDA-induced retinal injury model	Intravitreal injection	10 µM	Single injection, lasting 24 hours	SGI-1027 induced Oct4 expression in MG at 24hpi after retinal injury.	PMC5108807
Mice	Ovariectomy-induced osteoporosis model	Intraperitoneal injection	2.5 mg/kg	Once daily for 6 weeks	SGI-1027 reversed promoter hypermethylation, GPX4 suppression and ferroptotic osteoporosis	PMC11609303
Mice	Calvarial osteolysis model	Intraperitoneal injection	2.5 mg/kg	Once daily for 2 weeks	SGI-1027 significantly reversed TP-induced Gpx4 promoter hypermethylation and GPX4 repression, improving ferroptotic osteolysis to a similar extent as the ferroptosis inhibitor liproxstatin-1.	PMC11331012
ICR mice	D-galactose-induced accelerated aging model	Intraperitoneal injection	2.5 mg/kg	Daily for 8 weeks	Evaluate the protective effect of SGI-1027 on D-gal-induced renal aging	PMC8761007
Nude mice	A-498 cell subcutaneous xenograft model	Oral gavage	30 mg/kg/day (SGI-1027) and 2 mg/kg/day (everolimus)	Once daily for 16 days	To evaluate the in vivo anti-tumor effect of SGI-1027 in combination with everolimus, the results showed that the combination treatment significantly inhibited tumor growth and induced GSDME-dependent pyroptosis	PMC11481186
BALB/c nude mice	HeLa cell xenograft model	Oral gavage	50 mg/kg/day	Once daily for 30 consecutive days	To evaluate the effect of SGI-1027 in combination with AH057 on tumor volume, results showed that the combined treatment significantly reduced tumor volume.	PMC7476923

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CAS No.: 1020149-73-8

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CAS No.: 1020149-73-8

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Precautionary Statements-General

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Preparing Stock Solutions		1mg	5mg	10mg
Preparing Stock Solutions	1 mM 5 mM 10 mM	2.17mL 0.43mL 0.22mL	10.83mL 2.17mL 1.08mL	21.67mL 4.33mL 2.17mL
Dissolving Methods	Animal experiment Please choose the appropriate dissolution scheme according to your animal administration guide.For the following dissolution schemes, clear stock solution should be prepared according to in vitro experiments, and then cosolvent should be added in turn: in order to ensure the reliability of the experimental results, the clarified stock solution can be properly preserved according to the storage conditions; The working fluid for in vivo experiment is recommended to be prepared now and used on the same day; The percentage shown in front of the following solvent refers to the volume ratio of the solvent in the final solution; If precipitation or precipitation occurs in the preparation process, it can be assisted by heating and/or ultrasound. Protocol 1 Protocol 2

Precautionary Statements-General
Code	Phrase
P101	If medical advice is needed,have product container or label at hand.
P102	Keep out of reach of children.
P103	Read label before use
Prevention
Code	Phrase
P201	Obtain special instructions before use.
P202	Do not handle until all safety precautions have been read and understood.
P210	Keep away from heat/sparks/open flames/hot surfaces. - No smoking.
P211	Do not spray on an open flame or other ignition source.
P220	Keep/Store away from clothing/combustible materials.
P221	Take any precaution to avoid mixing with combustibles
P222	Do not allow contact with air.
P223	Keep away from any possible contact with water, because of violent reaction and possible flash fire.
P230	Keep wetted
P231	Handle under inert gas.
P232	Protect from moisture.
P233	Keep container tightly closed.
P234	Keep only in original container.
P235	Keep cool
P240	Ground/bond container and receiving equipment.
P241	Use explosion-proof electrical/ventilating/lighting/equipment.
P242	Use only non-sparking tools.
P243	Take precautionary measures against static discharge.
P244	Keep reduction valves free from grease and oil.
P250	Do not subject to grinding/shock/friction.
P251	Pressurized container: Do not pierce or burn, even after use.
P260	Do not breathe dust/fume/gas/mist/vapours/spray.
P261	Avoid breathing dust/fume/gas/mist/vapours/spray.
P262	Do not get in eyes, on skin, or on clothing.
P263	Avoid contact during pregnancy/while nursing.
P264	Wash hands thoroughly after handling.
P265	Wash skin thouroughly after handling.
P270	Do not eat, drink or smoke when using this product.
P271	Use only outdoors or in a well-ventilated area.
P272	Contaminated work clothing should not be allowed out of the workplace.
P273	Avoid release to the environment.
P280	Wear protective gloves/protective clothing/eye protection/face protection.
P281	Use personal protective equipment as required.
P282	Wear cold insulating gloves/face shield/eye protection.
P283	Wear fire/flame resistant/retardant clothing.
P284	Wear respiratory protection.
P285	In case of inadequate ventilation wear respiratory protection.
P231 + P232	Handle under inert gas. Protect from moisture.
P235 + P410	Keep cool. Protect from sunlight.
Response
Code	Phrase
P301	IF SWALLOWED:
P304	IF INHALED:
P305	IF IN EYES:
P306	IF ON CLOTHING:
P307	IF exposed:
P308	IF exposed or concerned:
P309	IF exposed or if you feel unwell:
P310	Immediately call a POISON CENTER or doctor/physician.
P311	Call a POISON CENTER or doctor/physician.
P312	Call a POISON CENTER or doctor/physician if you feel unwell.
P313	Get medical advice/attention.
P314	Get medical advice/attention if you feel unwell.
P315	Get immediate medical advice/attention.
P320
P302 + P352	IF ON SKIN: wash with plenty of soap and water.
P321
P322
P330	Rinse mouth.
P331	Do NOT induce vomiting.
P332	IF SKIN irritation occurs:
P333	If skin irritation or rash occurs:
P334	Immerse in cool water/wrap n wet bandages.
P335	Brush off loose particles from skin.
P336	Thaw frosted parts with lukewarm water. Do not rub affected area.
P337	If eye irritation persists:
P338	Remove contact lenses, if present and easy to do. Continue rinsing.
P340	Remove victim to fresh air and keep at rest in a position comfortable for breathing.
P341	If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing.
P342	If experiencing respiratory symptoms:
P350	Gently wash with plenty of soap and water.
P351	Rinse cautiously with water for several minutes.
P352	Wash with plenty of soap and water.
P353	Rinse skin with water/shower.
P360	Rinse immediately contaminated clothing and skin with plenty of water before removing clothes.
P361	Remove/Take off immediately all contaminated clothing.
P362	Take off contaminated clothing and wash before reuse.
P363	Wash contaminated clothing before reuse.
P370	In case of fire:
P371	In case of major fire and large quantities:
P372	Explosion risk in case of fire.
P373	DO NOT fight fire when fire reaches explosives.
P374	Fight fire with normal precautions from a reasonable distance.
P376	Stop leak if safe to do so. Oxidising gases (section 2.4) 1
P377	Leaking gas fire: Do not extinguish, unless leak can be stopped safely.
P378
P380	Evacuate area.
P381	Eliminate all ignition sources if safe to do so.
P390	Absorb spillage to prevent material damage.
P391	Collect spillage. Hazardous to the aquatic environment
P301 + P310	IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician.
P301 + P312	IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell.
P301 + P330 + P331	IF SWALLOWED: Rinse mouth. Do NOT induce vomiting.
P302 + P334	IF ON SKIN: Immerse in cool water/wrap in wet bandages.
P302 + P350	IF ON SKIN: Gently wash with plenty of soap and water.
P303 + P361 + P353	IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower.
P304 + P312	IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell.
P304 + P340	IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing.
P304 + P341	IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing.
P305 + P351 + P338	IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing.
P306 + P360	IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes.
P307 + P311	IF exposed: call a POISON CENTER or doctor/physician.
P308 + P313	IF exposed or concerned: Get medical advice/attention.
P309 + P311	IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician.
P332 + P313	IF SKIN irritation occurs: Get medical advice/attention.
P333 + P313	IF SKIN irritation or rash occurs: Get medical advice/attention.
P335 + P334	Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages.
P337 + P313	IF eye irritation persists: Get medical advice/attention.
P342 + P311	IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician.
P370 + P376	In case of fire: Stop leak if safe to Do so.
P370 + P378	In case of fire:
P370 + P380	In case of fire: Evacuate area.
P370 + P380 + P375	In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion.
P371 + P380 + P375	In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion.
Storage
Code	Phrase
P401
P402	Store in a dry place.
P403	Store in a well-ventilated place.
P404	Store in a closed container.
P405	Store locked up.
P406	Store in corrosive resistant/ container with a resistant inner liner.
P407	Maintain air gap between stacks/pallets.
P410	Protect from sunlight.
P411
P412	Do not expose to temperatures exceeding 50 oC/ 122 oF.
P413
P420	Store away from other materials.
P422
P402 + P404	Store in a dry place. Store in a closed container.
P403 + P233	Store in a well-ventilated place. Keep container tightly closed.
P403 + P235	Store in a well-ventilated place. Keep cool.
P410 + P403	Protect from sunlight. Store in a well-ventilated place.
P410 + P412	Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF.
P411 + P235	Keep cool.
Disposal
Code	Phrase
P501	Dispose of contents/container to ...
P502	Refer to manufacturer/supplier for information on recovery/recycling

Physical hazards
Code	Phrase
H200	Unstable explosive
H201	Explosive; mass explosion hazard
H202	Explosive; severe projection hazard
H203	Explosive; fire, blast or projection hazard
H204	Fire or projection hazard
H205	May mass explode in fire
H220	Extremely flammable gas
H221	Flammable gas
H222	Extremely flammable aerosol
H223	Flammable aerosol
H224	Extremely flammable liquid and vapour
H225	Highly flammable liquid and vapour
H226	Flammable liquid and vapour
H227	Combustible liquid
H228	Flammable solid
H229	Pressurized container: may burst if heated
H230	May react explosively even in the absence of air
H231	May react explosively even in the absence of air at elevated pressure and/or temperature
H240	Heating may cause an explosion
H241	Heating may cause a fire or explosion
H242	Heating may cause a fire
H250	Catches fire spontaneously if exposed to air
H251	Self-heating; may catch fire
H252	Self-heating in large quantities; may catch fire
H260	In contact with water releases flammable gases which may ignite spontaneously
H261	In contact with water releases flammable gas
H270	May cause or intensify fire; oxidizer
H271	May cause fire or explosion; strong oxidizer
H272	May intensify fire; oxidizer
H280	Contains gas under pressure; may explode if heated
H281	Contains refrigerated gas; may cause cryogenic burns or injury
H290	May be corrosive to metals
Health hazards
Code	Phrase
H300	Fatal if swallowed
H301	Toxic if swallowed
H302	Harmful if swallowed
H303	May be harmful if swallowed