Structure of 115619-30-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 115619-30-2 |
Formula : | C6H9F3O2 |
M.W : | 170.13 |
SMILES Code : | CCC(C(F)(F)F)CC(O)=O |
MDL No. : | MFCD20645428 |
InChI Key : | UWBFKJIVHZZGHM-UHFFFAOYSA-N |
Pubchem ID : | 14407062 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P280-P305+P351+P338-P310 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.83 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 32.92 |
TPSA ? Topological Polar Surface Area: Calculated from |
37.3 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.42 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.99 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.31 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.79 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.63 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.03 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.88 |
Solubility | 2.22 mg/ml ; 0.013 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.4 |
Solubility | 0.678 mg/ml ; 0.00399 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.38 |
Solubility | 7.09 mg/ml ; 0.0417 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.92 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.78 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
[00192] Step 2: To a suspension of 10% palladium on activated carbon (wet) (1.1 g, 1.0 mmol) in EtOH (20 mL) under N2 was added a solution of E and Z isomers of ethyl 3- (trifluoromethyl)pent-2-enoate in MeOH (10 mL). The mixture was purged under N2 (3 cycles) and back filled with H2. The mixture was then stirred under H2 balloon for 8 hours. The mixture was filtered through a Celite pad, and the Celite cake was washed well with additional EtOH. The filtrate collected was treated with lithium hydroxide hydrate (1.1 g, 25 mmol) in water (5 mL). The mixture was stirred at ambient temperature for 4 hours. The mixture was diluted with water (100 mL) and adjusted to pH 12 with 1 N NaOH. The mixture was washed with EtOAc (2 X 60 mL), and the basic aqueous layer was made acidic with 2 N HC1 then partitioned with DCM (3 X 50 mL). The combined organic layer was dried (MgS04), filtered and concentrated in vacuo to provide 3-(trifluoromethyl)pentanoic acid as an oil. 1H NMR (400 MHz, CDC13) delta 2.69-2.629 (m, 2H), 2.481-2.412 (m, 1H), 1.813-1.709 (m, 1H), 1.582-1.473 (m, 1H), 1.281-1.231 (m, 1H), 1.019 (t, J=8.589 Hz, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 27A A solution of racemic <strong>[115619-30-2]3-trifluoromethyl-pentanoic acid</strong> (8 g, 47 mmol), TBTU (16.6 g, 52 mmol) and diisopropylethylamine (24.1 mL, 141 mmol) in dimethylformamide (80 mL) was stirred at 20 C. for 1 h then (S)-(-)-1-phenylethylamine (10 g, 82 mmol) was added and the mixture was stirred for 16 h at 20 C. The solvent was removed and dichloromethane (200 mL) was added. The resulting mixture was washed with 10 citric acid aqueous solution (200 mL), K2CO320% in water (100 mL) and dried over Na2SO4. Evaporation of the solvent gave a crude solid that was mixed with methanol (10 mL) and filtered through a pad of activated basic alumina. Separation of diastereoisomers was obtained by flash chromatography on SiO2 eluting with a mixture of cyclohexane/ethyl acetate 85/15.4.5 g (35.8%) of the title compound were obtained as a solid.Rf: 0.25 (cyclohexane/ethyl acetate 85/15, stained with basic KMnO4)HPLC-MS (Method 1 E hydro): Rt: 9.35 minMS (APCI pos): m/z=274 (M+H)+.Chiral HPLC (Method Chiral 1): Rt: 5.58 min de: >99%Example 27B 4.4 g (34.2%) of a solid were obtained as second product from flash chromatography of Example 1B.Rf: 0.20 (cyclohexane/ethyl acetate 85/15, stained with basic KMnO4)HPLC-MS (Method 1 E hydro): Rt: 9.33 minMS (APCI pos): m/z=274 (M+H)+.Chiral HPLC (Method Chiral 1): Rt: 6.18 min de: >99% | ||
Example 1 B A solution of racemic 3-thfluoromethyl-pentanoic acid (8 g, 47 mmol), TBTU (16.6 g, 52 mmol) and diisopropylethylamine (24.1 ml_, 141 mmol) in dimethylformamide (80 ml_) was stirred at 200C for 1 h then (S)-(-)-1 -phenylethylamine (10 g, 82 mmol) was added and the mixture was stirred for 16 h at 200C. The solvent was removed and dichloromethane (200 ml_) was added. The resulting mixture was washed with citric acid 10 % in water (200 ml_), K2CO3 20 % in water (100 ml_) and dried over sodium sulphate. Evaporation of the solvent gave a crude solid that was mixed with methanol (10 ml_) and filtered through a pad of activated basic alumina. Separation of diastereoisomers was obtained by flash chromatography on SiO2 eluting with a mixture of cyclohexane/ethyl acetate 85/15. <n="153"/>4.5 g (35.8 %) of the title compound were obtained as white solid.Rf: 0.25 (cyclohexane/ethyl acetate 85/15, stained with basic KMnO-;)HPLC-MS (Method 1 E hydro): Rt: 9.35 minMS (APCI pos): m/z = 274 (M+H)+.Chiral HPLC (Method Chiral 1 ): Rt: 5.58 min de: >99 %Example 1 C 4.4 g (34.2 %) of a white solid were obtained as second product from flash chromatography of Example 1 B.Rf: 0.20 (cyclohexane/ethyl acetate 85/15, stained with basic KMnO-;)HPLC-MS (Method 1 E hydro): Rt: 9.33 minMS (APCI pos): m/z = 274 (M+H)+.Chiral HPLC (Method Chiral 1 ): Rt: 6.18 min de: >99 % |
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