Structure of 1194-21-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1194-21-4 |
Formula : | C4H4ClN3O |
M.W : | 145.55 |
SMILES Code : | O=C1N=C(NC(=C1)Cl)N |
MDL No. : | MFCD12028107 |
InChI Key : | VBWACOJLJYUFKJ-UHFFFAOYSA-N |
Pubchem ID : | 135403356 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 34.27 |
TPSA ? Topological Polar Surface Area: Calculated from |
71.77 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.38 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.46 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.01 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.17 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.14 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.18 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.95 |
Solubility | 16.5 mg/ml ; 0.113 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.58 |
Solubility | 38.2 mg/ml ; 0.262 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.79 |
Solubility | 2.34 mg/ml ; 0.0161 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.51 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.71 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With sodium hydroxide; In water; for 5h;Reflux; | To a solution of 4,6-dichloropyrimidin-2-amine (21.2 g, 129.27 mmol) in 200 mL of IN NaOH was added NaOH (4 g, 100.00 mmol) in several batches. The resulting solution was refluxed for 5 hours. The reaction mixture was cooled in a bath of H2O/ice. Adjustment of the pH to 5-6 was accomplished by the addition of CH3COOH. A filtration was performed and the filter cake was collected. The solid was washed with water and dried under an oven with reduced pressure. This resulted in 17 g (86percent) of 2-amino-6-chloropyrirnidin-4(3H)-one as a white solid. |
With sodium hydroxide; water; for 5h;Heating / reflux; | 2-Amino-4, 6-dichloropyrimidine (10.6 g) was suspended in 1N NAOH (100 mL) and heated to reflux. Additional NaOH(s) (1.0 g) was added after 2 h and 4 h. After 5H, the solution was cooled with an ice bath and neutralized with acetic acid. The white precipitate was filtered, washed with water, and dried on a high vacuum to yield 9.28 g of white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | In water; at 120 - 130℃; for 8h; | Preparation of Intermediate N-lTo a solution of Intermediate M (5g, 34.48 mmol) was added 40percent aqueous methyl amine solution (50 mL), and the resulting mixture was heated in a steel bomb at 120-130 °C (bath temperature) for 8 hours. The reaction mixture was cooled to room temperature and then concentrated to obtain a crude residue that was washed with EtOH several times to obtain pure Intermediate N-l (3.5g, 72percent). Rf = 0.6 (20percent MeOH/CHCl3/0.2 mL of aqueous NH3). 1H-NMR (400MHz, DMSO-d6) delta 9.66 (br. s, exchanged with D20, 1H), 6.25 (br. s, exchanged with D20, 1H), 6.10 (br. s, exchanged with D20, 2H), 4.36 (s, exchanged with D20, 1H), 2.61(s, 3H). Mass (APCI positive mode, m/z): 141.0 (M++l). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In water; at 120 - 130℃; for 8h; | Synthesis of Compound (50)To a solution of Intermediate M (5g, 34.48 mmol) was added n-propylamine (50 mL) and H20 (20 mL), and the resulting mixture was heated in a steel bomb at 120-130 °C (bath temperature) for 8 hours. The reaction mixture was cooled to room temperature and concentrated to obtain a crude residue. This residue was washed with EtOH several times to obtain pure Compound (50) as a yellow solid. Rf = 0.5(20percent MeOH/CHC /0.2 mL of aqueous NH3). - MR (400MHz, DMSO-<3/4) delta 9.62 (s, exchanged with D20, 1H), 6.35 (s, exchanged with D20, 1H), 6.10 (s, exchanged with D20, 1H), 4.49 (s, 1H), 3.34 (br. s, 2H), 1.70-1.60 (m, 2H), 0.85 (t, J = 7.6 Hz, 2H). Mass (m/z): 168.8 (M++l). HPLC: (Column: Acquity; UPLC BEH; C-8 (100 chi 2.1 mm) 1.7 mu, A: 0.05M Ammonium bicarbonate (Aqueous), B: Acetonitrile, T/percentB: 0/20, 4/80, 6/80, 6.1/20, Flow rate: 0.3 mL/min, Diluent: A:B (7:3)), Rt=1.194 min, 98.07 (215 nra), 98.51 (254 nra), 96.45 (Max plot). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With sulfuric acid; nitric acid; | EXAMPLE 4 2-Amino-6-chloro-5-nitro-4(3H)-pyrimidinone A solution of 64 ml of concentrated sulfuric acid and 64 ml of concentrated nitric acid was cooled to 0° to -5° C. in an ice-salt bath, when 11.75 g (0.0807 mole) of 2-amino-6-chloro-4-(3H)-pyrimidinone were added in small portions so that the reaction temperature did not exceed 10° C. After 45 minutes, all of the starting material was added. The mixture was stirred for 3 hours at 5° C., when the mixture was poured over 400 g of ice and stirred for 1 hour at 5° C. The precipitated solids were collected by filtration and washed with 35 ml of ethanol and 35 ml of ether and dried at 20° C./2 mm Hg overnight to produce 14.7 g of a yellow solid, m.p. 268° C. The yield was 87percent. NMR, IR and MS were consistent with the expected compound. Analysis: Calculated for C4 H3 ClN4 O3.H2 O: C, 23.04; H, 2.42; N, 26.87; H2 O 8.64. Found: C, 22.70; H, 2.32; N, 26.82; H2 O (Karl Fischer), 8.48. |
87% | With sulfuric acid; nitric acid; In water; at 20℃; | To a solution of <strong>[1194-21-4]2-amino-6-chloropyrimidin-4(3H)-one</strong> (10 g, 68.73 mmol) in H2SO4 (46 mL, 98percent) at 4O0C was added HNO3 (9 g, 65percent) dropwise with stirring. The resulting solution was stirred for an hour at room temperature. The solution was poured into 100 g of ice. A filtration was performed. The filter cake was collected and dried under an oven with reduced pressure, resulted in 12 g (87percent) of 2-amino-6-chloro-5-nitropyrimidin-4(3H)-one as a yellow solid. 1H NMR (300 MHz, DMSO-d6) delta 7.13(1H, s), 8.59 (IH, s), 12.16 (IH, s). |
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