Structure of 1210838-82-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1210838-82-6 |
Formula : | C7H5BrN2 |
M.W : | 197.03 |
SMILES Code : | BrC1=CN=C(C(=C1)C#C)N |
MDL No. : | MFCD10566045 |
InChI Key : | MKIMFNOYJFCQRQ-UHFFFAOYSA-N |
Pubchem ID : | 45789786 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 44.28 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.91 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.92 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.44 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.5 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.56 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.9 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.66 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.41 |
Solubility | 0.762 mg/ml ; 0.00387 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.86 |
Solubility | 2.7 mg/ml ; 0.0137 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.6 |
Solubility | 0.489 mg/ml ; 0.00248 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.48 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.01 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With lithium hydroxide; In 1-methyl-pyrrolidin-2-one; water; at 60 - 75℃; under 37.5038 - 75.0075 Torr; | Example 7; a) Preparation of 5-bromo-7-azaindole (3 or Ia) from isolated 2-amino-5-bromo-3-iodopyridine; A suspension of 2-amino-5-bromo-3-iodopyridine (5.0 g, 16.7 mmol), bis-(triphenylphosphine)-palladium(II)-dichloride (43 mg, 0.061 mmol), copper(I)iodide (29.4 mg, 0.15 mmol) and triethylamine (2.21 g, 21.8 mmol) in dichloromethane (20 mL) was treated at 23 to 30 C. within 1 to 2 hours with a solution of 1,1-dimethyl-2-propyn-1-ol (1.85 g, 21.7 mmol) in dichloromethane (10 mL) and the resulting mixture was stirred at 25 C. for 4 hours. The mixture was diluted with dichloromethane (10 mL) and washed with water (2×25 mL). The organic phase was then treated with 1 M HCl (40 mL). The layers were separated and the organic layer was extracted with 1 M HCl (15 mL). The combined product containing aqueous layers were washed with dichloromethane (2×8 mL). The pH of the aqueous layer was adjusted to pH 7-9 by the drop wise addition of sodium hydroxide solution (28% in water). The resulting suspension was stirred at 20 C. over night and the crystals were then filtered off and washed with water (2×5 mL). The wet crystals were dissolved in N-methylpyrrolidone (50 mL) and treated within 2 hours at 60 C. and 50-100 mbar with an aqueous solution of lithium hydroxide (2.4 M, 32 mL). The resulting mixture was heated to 75 C. and stirred at this temperature and under reduced pressure (50-100 mbar) for 15-20 hours. Toluene (20 mL) and water (20 mL) were then added and the layers were separated. The aqueous layer was extracted with toluene (3×25 mL). The combined organic layers were washed with water (3×10 mL) and then concentrated to dryness. The residue was dissolved in N-methylpyrrolidone (50 mL) and treated at 60 C. with potassium tert.-butylate (3.52 g, 30.7 mmol). After stirring for 3 hours at 60 C., the mixture was cooled to ambient temperature and diluted with toluene (40 mL) and water (40 mL). The aqueous layer was separated and back extracted with toluene (3×50 mL). The combined toluene layers were washed with water (3×10 mL) and then concentrated to dryness. The residue was dissolved in a hot mixture of toluene and n-heptane (20 mL). The clear solution was cooled to -5 C. within 4 to 6 hours whereupon crystals precipitated. The suspension was stirred at -5 C. for 2-4 hours. The crystals were filtered off, washed with heptane and dried at 45 C./<30 mbars over night to afford 5-bromo-7-azaindole (2.05 g, 62% yield) as slightly yellow crystals with a purity of 99.6% (HPLC, area %). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With potassium tert-butylate; In N,N-dimethyl-formamide; at 60 - 85℃;Large scale; | Add 150 kg of DMF to a 200 L reactor, slowly add 70 kg of potassium t-butoxide, stir to 60-70 C, and slowly add 50 kg of <strong>[1210838-82-6]5-bromo-3-ethynyl-2-aminopyridine</strong>. The temperature control is not higher than 80 C , plus complete the reaction incubated 80-85 C 2 ~ 3h, TLC monitoring completion of the reaction (PE / DCM = 1/1), cooled after completion of the reaction, the reaction system was slowly added to 400kg of ice water, cooled to 10 C was stirred for 2h, filtered off with suction (suction Should difficult, adding an appropriate amount of filter aid such as diatomaceous earth, etc.), to give a brown solid crude wet weight of about 75 kg (about 95% HPLC purity). The wet product was added to a 500 L reaction vessel, 300 kg of ethyl acetate (EA) was added, 5 kg of activated carbon was added, and the mixture was heated under reflux for 30 minutes, and then suction filtered. The filter cake was washed with an appropriate amount of EA, and then the filtrate and the washing liquid were combined, and the EA was evaporated to about 250 kg under reduced pressure. (Remaining about 50kg in the kettle), cooling to 0-5 C for 2h, suction filtration, filter cake washed with appropriate amount of cold EA, blasting at 60 C to obtain a light yellow solid product 5-bromo-7-azaindole 45kg, yield 90%, HPLC purity 99.3% |
Example 7; a) Preparation of 5-bromo-7-azaindole (3 or Ia) from isolated 2-amino-5-bromo-3-iodopyridine; A suspension of 2-amino-5-bromo-3-iodopyridine (5.0 g, 16.7 mmol), bis-(triphenylphosphine)-palladium(II)-dichloride (43 mg, 0.061 mmol), copper(I)iodide (29.4 mg, 0.15 mmol) and triethylamine (2.21 g, 21.8 mmol) in dichloromethane (20 mL) was treated at 23 to 30 C. within 1 to 2 hours with a solution of 1,1-dimethyl-2-propyn-1-ol (1.85 g, 21.7 mmol) in dichloromethane (10 mL) and the resulting mixture was stirred at 25 C. for 4 hours. The mixture was diluted with dichloromethane (10 mL) and washed with water (2×25 mL). The organic phase was then treated with 1 M HCl (40 mL). The layers were separated and the organic layer was extracted with 1 M HCl (15 mL). The combined product containing aqueous layers were washed with dichloromethane (2×8 mL). The pH of the aqueous layer was adjusted to pH 7-9 by the drop wise addition of sodium hydroxide solution (28% in water). The resulting suspension was stirred at 20 C. over night and the crystals were then filtered off and washed with water (2×5 mL). The wet crystals were dissolved in N-methylpyrrolidone (50 mL) and treated within 2 hours at 60 C. and 50-100 mbar with an aqueous solution of lithium hydroxide (2.4 M, 32 mL). The resulting mixture was heated to 75 C. and stirred at this temperature and under reduced pressure (50-100 mbar) for 15-20 hours. Toluene (20 mL) and water (20 mL) were then added and the layers were separated. The aqueous layer was extracted with toluene (3×25 mL). The combined organic layers were washed with water (3×10 mL) and then concentrated to dryness. The residue was dissolved in N-methylpyrrolidone (50 mL) and treated at 60 C. with potassium tert.-butylate (3.52 g, 30.7 mmol). After stirring for 3 hours at 60 C., the mixture was cooled to ambient temperature and diluted with toluene (40 mL) and water (40 mL). The aqueous layer was separated and back extracted with toluene (3×50 mL). The combined toluene layers were washed with water (3×10 mL) and then concentrated to dryness. The residue was dissolved in a hot mixture of toluene and n-heptane (20 mL). The clear solution was cooled to -5 C. within 4 to 6 hours whereupon crystals precipitated. The suspension was stirred at -5 C. for 2-4 hours. The crystals were filtered off, washed with heptane and dried at 45 C./<30 mbars over night to afford 5-bromo-7-azaindole (2.05 g, 62% yield) as slightly yellow crystals with a purity of 99.6% (HPLC, area %). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40.9% | 5-Bromo-3-(l-isopropyl- IH- [ 1 ,2 ,3] triazol-4-yl)-pyridin-2-ylamine: A mixture of isopropyl bromide (5.0 g, 40.65 mmol) and sodium azide (2.6 g, 40.65 mmol) in t-BuOH/water (1 :2) (50 mL) was stirred for 2 h at 80 C. Then the reaction mixture was cooled to room temperature, to which was added <strong>[1210838-82-6]5-bromo-3-ethynyl-pyridin-2-ylamine</strong> (0.8 g, 4.065 mmol) and Cul (catalytic amount). The reaction mixture was stirred for 16 h at 80 C. The reaction mixture was cooled to RT, diluted with EtOAc (100 mL) and washed with water (50 mL). The organic layer was washed with brine solution (50 mL), dried over anhydrous Na2S04 and solvent was evaporated under reduced pressure to afford crude compound. Crude compound was washed with diethyl ether to afford the title compound as ash colour solid. Yield: 450 mg (40.9 %) 1H NMR (DMSO-dg, 400 MHz, TMS) delta: 8.87 (IH, s), 8.09-8.08(lH, d), 8.04 (IH, s), 7.15 (2H, br), 4.90-4.83 (IH, m), 1.55 (3H, s), 1.53 (3H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With copper(ll) sulfate pentahydrate; sodium 2-(1,2-dihydroxyethyl)-4-hydroxy-5-oxo-2,5-dihydro-furan-3-olate; sodium hydrogencarbonate; In water; tert-butyl alcohol; at 20℃;Inert atmosphere; | Step 3: 5-Bromo-3-(3-(((tert-butyldimethylsilyl)oxy)methyl)isoxazol-5-yl)pyridin-2-amine To a suspension of <strong>[1210838-82-6]5-bromo-3-ethynylpyridin-2-amine</strong> (Intermediate C15) (500 mg, 2.54 mmol) and sodium ascorbate (0.254 ml, 0.254 mmol) in t-BuOH (10 ml) and water (10ml) under N2 was added copper(ll) sulfate pentahydrate (13mg, 0.051 mmol, 2mol%) and NaHCOs (853mg, 10.15mmol) followed by 2-((tert-butyldimethylsilyl)oxy)-N- hydroxyacetimidoyl chloride (step 3) (1.7g, 7.61 mmol, 3eq) slowly over 15mins. The mixture was stirred at RT overnight. The resulting mixture was extracted into DCM, washed with water, brine, the organic layer separated, dried over MgS04, filtered and the solvent removed under reduced pressure. The crude product was purified by flash column chromatography elution with iso-hexane:ethyl acetate (0-30%) on a 24g silica cartridge. The required fractions were combined and the solvent removed under reduced pressure to afford the title compound; LCMS: Rt = 1.62mins MS m/z 384.4 [M+H]+; Method 2minl_owpHv03. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With copper(ll) sulfate pentahydrate; sodium 2-(1,2-dihydroxyethyl)-4-hydroxy-5-oxo-2,5-dihydro-furan-3-olate; sodium hydrogencarbonate; In water; tert-butyl alcohol; at 20℃;Inert atmosphere; | Step 1 : Ethyl 5-(2-amino-5-bromopyridin-3-yl)isoxazole-3-carboxylate To a suspension of <strong>[1210838-82-6]5-bromo-3-ethynylpyridin-2-amine</strong> (Intermediate C15) (2.84 g, 14.41 mmol) and sodium ascorbate (1.441 ml, 1.441 mmol) in t-BuOH (50 ml) and water (50ml) under N2 was added copper(ll) sulfate pentahydrate (72mg, 0.288mmol, 2 mol%) and NaHC03 (4.84g, 57.7mmol) followed by (Z)-ethyl 2-chloro-2-(hydroxyimino)acetate (2.2g, 14.4mmol, 1 eq) slowly over 15mins.The resulting mixture was stirred at room temp for 1 hour. To the mixture was slowly added further (Z)-ethyl 2-chloro-2-(hydroxyimino)acetate (2.2g, 14.4mmol, 1eq) over 15mins and stirring continued for a further hour. Further (Z)-ethyl 2-chloro-2-(hydroxyimino)acetate (2.2g, 14.4mmol, 1eq) was added over 15mins and the mixture was stirred at RT overnight. The mixture was extracted into ethyl acetate, washed with water, brine, the organic layer separated, dried over MgS04, filtered and the solvent removed under reduced pressure. The crude product was purified by flash column chromatography elution with iso-hexane:ethyl acetate (0-40%) on a 80g silica cartridge. The required fractions were combined and the solvent removed under reduced pressure. A solid crystallised on concentration. The solid was collected by filtration to yield the title compound as orange crystals; LCMS: Rt = 1.18mins MS m/z 314.1 [M+H]+; Method 2minl_owpHv03. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With copper(ll) sulfate pentahydrate; sodium 2-(1,2-dihydroxyethyl)-4-hydroxy-5-oxo-2,5-dihydro-furan-3-olate; sodium hydrogencarbonate; In water; tert-butyl alcohol; at 20℃;Inert atmosphere; | Step 5: 5-Bromo-3-(3-(trifluoromethyl)isoxazol-5-yl)pyridin-2-amine To a 50 mL round-bottomed flask was added <strong>[1210838-82-6]5-bromo-3-ethynylpyridin-2-amine</strong> (500 mg, 2.54 mmol), and sodium ascorbate (0.254 ml, 0.254 mmol) in t-BuOH (10 ml) and water (10ml) under N2 to give a brown suspension. To the mixture was added copper(ll) sulfate pentahydrate (13mg, 0.051 mmol, 2mol%) and NaHC03 (923mg, 10.99mmol) followed by 2,2,2-trifluoro-N-hydroxyacetimidoyl bromide (1.239g, 2.54mmol) in 250muIota portions over 15mins. The reaction mixture was stirred at RT for 1 hour. To the mixture was added 2,2,2- trifluoro-N-hydroxyacetimidoyl bromide (700mg, 1.433mmol) and stirring continued at RT overnight. The resulting mixture was extracted into ethyl acetate, washed with water, brine, the organic layer separated, dried over MgS04, filtered and the solvent removed under reduced pressure. The crude product was purified by flash column chromatography elution with iso hexane:ethyl acetate (0-20%) on a 12g silica cartridge. The product fractions were combined and the solvent removed under reduced pressure to yield a yellow solid. The product was purified by a second flash column chromatography,, elution with iso hexane:ethyl acetate (0-20%) on a 12g silica cartridge. The fractions were combined and the solvent removed under reduced pressure to yield the title compound as a yellow solid; LCMS: Rt = 1.20mins MS m/z 308.4 [M+H]+; Method 2minl_owpHv01. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hypochlorite; In tetrahydrofuran; at 0 - 20℃;Inert atmosphere; | Step 2: 5-Bromo-3-(3-(chloromethyl)isoxazol-5-yl)pyridin-2-amine To a 100 ml_ round-bottomed flask was added <strong>[1210838-82-6]5-bromo-3-ethynylpyridin-2-amine</strong> (Intermediate C15) (1.3 g, 6.60 mmol), and 2-chloroacetaldehyde oxime (mixture of isomers, from Step 1)(1.424 g, 9.90 mmol) in THF (15 ml) under N2 to give a brown solution. To the mixture at 0C was then added NaOCI (30ml) dropwise over 90mins. The mixture was stirred at RT overnight. The resulting mixture was extracted into DCM, washed with water, brine, the organic layer separated, dried over MgS04, filtered and the solvent removed under reduced pressure. The crude product was purified by flash column chromatography elution with iso- hexane:ethyl acetate (0-50%) on a 40g silica cartridge. The product fractions were combined and the solvent removed under reduced pressure to yield the title compound as a brown oil; LCMS: Rt = 1.21 mins MS m/z 290.1 (Br isotope) [M+H]+; Method 2minLowpHv03. |
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