Structure of 13534-90-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 13534-90-2 |
Formula : | C5H3Br2N |
M.W : | 236.89 |
SMILES Code : | BrC1=C(Br)C=NC=C1 |
MDL No. : | MFCD00234016 |
InChI Key : | ZFZWZGANFCWADD-UHFFFAOYSA-N |
Pubchem ID : | 817106 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 8 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 39.64 |
TPSA ? Topological Polar Surface Area: Calculated from |
12.89 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.87 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.23 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.61 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.01 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.8 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.31 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.27 |
Solubility | 0.128 mg/ml ; 0.000539 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.14 |
Solubility | 1.73 mg/ml ; 0.00731 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.74 |
Solubility | 0.0435 mg/ml ; 0.000184 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.16 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.44 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | In N,N-dimethyl-formamide; at 20℃; for 1h;Inert atmosphere; | To a solution of <strong>[13534-90-2]3,4-dibromopyridine</strong> (500 mg; 2.11 mmol; 1 eq.) in dry DMF (2 mL) sodium methanethionalate (163 mg; 2.32 mmol; 1.1 eq.) is added portionwise under Ar. After stirring at room temperature for 1 h, the reaction mixture is diluted with EtOAc and the organic layer is washed with water and brine, dried over Na2SO4 and concentrated in vacuo. The residue is purified by FCC (0-50% EtOAc gradient in hexane) to give 3-bromo-4- (methylsulfanyl)pyridine (370 mg; 1.81 mmol; yield: 86%; light yellow oil; UPLC purity: 100%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 55 4-[(3-Bromo-pyridin-4-ylamino)-methyl]-piperidine-1-carboxylic acid benzyl ester A mixture of benzyl-4-(aminomethyl)piperidine-1-carboxylate (EXAMPLE 13, Step 1, 0.20 g, 0.81 mmol), <strong>[13534-90-2]3,4-dibromo-pyridine</strong> (Chem. Abstracts, 58:5627) (0.19 g, 0.81 mmol) in IPA (0.5 mL) was heated at 100 C. in a sealed reaction tube for 7 h, then concentrated in vacuo. The residue was purified by silica gel chromatography (DCM IPA hexane)) to give 4-[(3-Bromo-pyridin-4-ylamino)-methyl]-piperidine-1-carboxylic acid benzyl ester. M.S.(M+1):405.27. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1 g | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate; In ethanol; water; for 3h;Reflux; Inert atmosphere; | A mixture of 4-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan-2-yl)-lH-pyrrole-2-carboxylic acid methyl ester (2.5 g, 10 mmol), <strong>[13534-90-2]3,4-dibromo-pyridine</strong> (2.6 g, 11 mmol), CS2CO3 (6.5 g, 20 mmol) and Pd(dppf)Cl2 (732 mg, 1 mmol) in EtOH (30 mL) and water (5 mL) was refluxed for 3 hours under N2 protection, and then poured into water (100 mL). The aqueous layer was extracted with EtOAc (100 mLx5). The combined organic layers were concentrated. The residue was purified by flash chromatography to give 4-(3-bromo-pyridin-4-yl)-lH-pyrrole-2-carboxylic acid methyl ester (1 g) as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | With tetrakis(triphenylphosphine) palladium(0); at 90℃; for 2.5h;Inert atmosphere; | Step I: A solution of cyclopropyl zink bromide (0.5 M, 12 mL, 6.0 mmol) was added to ethyl <strong>[13534-90-2]3,4-dibromopyridine</strong> (1.42 g, 6.0 mmol) and Pd(PPh3)4 (347 mg, 0.6 mmol) and the RM was stirred at 90 Cunder an inert atmosphere for 2.5 h. Subsequently, the volatiles were removed under reduced pressure and the residue was dissolved in water and extracted with CH2CI2. The combined organic layers were dried and the volatiles were removed under reduced pressure. The residue was purified by CC (SiC2, EtOAc/Cy (1:2)) to yield the desired compound (600 mg, 51%).LC-MS (Method 1): m/z [M+H] = 198.1 (MW calc. = 196.98); R1 = 2.6 mm. 1H-NMR (CDCI3): oe = 0.79 (m,2H); 1.15 (m, 2H); 2.20 (m, 1H); 6.72 (d, J = 5.2 H, 1H); 8.85 (d, J = 5.2 Hz, IH); 8.63 (s, 1H). 13C-NMR(CDCI3): oe = 9.7; 15.2; 119.9; 123.9; 148.1; 151.3; 152.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
455 mg | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate; In water; dimethyl sulfoxide; | The titled compound was prepared by the reaction of <strong>[13534-90-2]3,4-dibromopyridine</strong> (1.01 g, 4.26 mmol) with 4-nitrophenylboronic acid pinacol ester (1.06 g, 4.26 mmol) using cesium carbonate (2.07 g, 6.39 mmol) and [l, -bis(diphenylphosphino)ferrocene]dichloropalladium (II) (155 mg, 0.21 mmol) in a mixture of DMSO and water (20 mL, 3: 1) as per the procedure described in Step 1 of Intermediate 1 to yield 455 mg of the product; 1H NMR (300 MHz, CDC13) delta 7.33 (d, 7 = 4.8 Hz, 1H), 7.63 (d, 7 = 8.7 Hz, 2H), 8.35 (d, 7 = 8.7 Hz, 2H), 8.64 (d, 7 = 5.1 Hz, 1H), 8.89 (s, 1H) ; ESI-MS (m/z) 281 (M+2H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
513 mg | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate; In water; dimethyl sulfoxide; | The titled compound was prepared by the reaction of <strong>[13534-90-2]3,4-dibromopyridine</strong> (1.02 g, 4.30 mmol) with 4-chlorophenylboronic acid (673 mg, 4.30 mmol) using cesium carbonate (2.10 g, 6.45 mmol) and [l, -bis(diphenylphosphino)ferrocene]dichloropalladium (II) (157 mg, 0.22 mmol) in a mixture of DMSO and water (20 mL, 3: 1) as per the procedure described in Step 1 of Intermediate 1 to yield 513 mg of the product; 1H NMR (300 MHz, CDC13) delta 7.25 (d, J = 6.9 Hz, 1H), 7.37 (d, J = 8.4 Hz, 2H), 7.44 (d, J = 8.4 Hz, 2H), 8.54 (d, J = 5.1 Hz, 1H), 8.81 (s, 1H); APCI-MS (m/z) 268 (M)+, 270 (M+2H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With lithium diisopropyl amide; In tetrahydrofuran; diethyl ether; hexane; at -78 - 24℃; for 12h; | Thienothiophene dicarbaldehyde (5 g, 25.48 mmol) is dissolved in 250 mL of dry diethylether and dry tetrahydrofuran (THF) and then, cooled down to -78 C. Then, 42.12 mL of diisopropylamine (a 2.0 M hexane solution) is slowly added thereto in a dropwise fashion, and 2,3-dibromopyridine (13.3 g, 56.16 mmol) is added thereto. The mixture is slowly heated and stirred at room temperature (24 C.) for 12 hours. Subsequently, 100 mL of an ammonium chloride-saturated solution is added thereto, and an extract is obtained by using chloroform and several times washed with water. The obtained extract is dried with magnesium sulfate and then, filtered, and the chloroform solvent is removed to obtain a compound 2a. (a yield of 75%) |