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CAS No. : | 149771-44-8 | MDL No. : | MFCD17016708 |
Formula : | C11H20N2O2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | HNINFCBLGHCFOJ-UHFFFAOYSA-N |
M.W : | 212.29 | Pubchem ID : | 15740908 |
Synonyms : |
|
Num. heavy atoms : | 15 |
Num. arom. heavy atoms : | 0 |
Fraction Csp3 : | 0.91 |
Num. rotatable bonds : | 3 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 66.0 |
TPSA : | 41.57 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.83 cm/s |
Log Po/w (iLOGP) : | 2.68 |
Log Po/w (XLOGP3) : | 1.08 |
Log Po/w (WLOGP) : | 0.6 |
Log Po/w (MLOGP) : | 1.15 |
Log Po/w (SILICOS-IT) : | 0.65 |
Consensus Log Po/w : | 1.23 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.64 |
Solubility : | 4.88 mg/ml ; 0.023 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.54 |
Solubility : | 6.05 mg/ml ; 0.0285 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -1.37 |
Solubility : | 8.97 mg/ml ; 0.0423 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 3.73 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302+H312+H332-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
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* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With hydrogen In ethanol | 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester (Intermediate); A mixture of 3-benzyl-3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid te/if-butyl ester (13.0 g, 43.0 mmol), palladium on carbon (4.0 g, 5percent) and ethanol (100 ml, 99percent) was stirred under hydrogen. The mixture was filtered on celite, dried and evaporated. A white powder was isolated. Yield 8.4 g (92percent). Mp 103.4-106°C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With potassium carbonate In methanol; water at 20℃; for 16 h; | EXAMPLE 1I 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic Acid Tert-Butyl Ester To the product of Example 1H (2.0 g, 6.5 mmol) in 57 mL CH3OH and 11 mL H2O was added 2.8 g K2CO3 (20.3 mmol). The mixture stirred for 16 h at ambient temperature then was filtered, concentrated under reduced pressure and purified via column chromatography (SiO2, 50percent hexanes-EtOAc) to give 1.2 g of the title compound (5.65 mmol, 87percent yield). MS (DCI/NH3) m/z 213 (M+H)+. |
87% | With water; potassium carbonate In methanol at 20℃; for 16 h; | Example 1I 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester To the product of Example 1H (2.0 g, 6.5 mmol) in 57 mL CH3OH and 11 mL H2O was added 2.8 g K2CO3 (20.3 mmol). The mixture stirred for 16 h at ambient temperature then was filtered, concentrated under reduced pressure and purified via column chromatography (SiO2, 50percent hexanes-EtOAc) to give 1.2 g of the title compound (5.65 mmol, 87percent yield). MS (DCl/NH3) m/z 213 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | Pd(OH)2-C; In methanol; | G. tert-Butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate A mixture of tert-butyl 3-benzyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate, Pd(OH)2-C (1.1 g) in MeOH (22 mL) was stirred under hydrogen atmosphere (4 atm) for 10 h at room temperature. The mixture was filtered through celite and the filtrate was concentrated in vacuo to give a product (1.45 g, 94%) as a white solid. This product was used for next step without purification. |
92% | With hydrogen;5%-palladium/activated carbon; In ethanol; | 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester (Intermediate); A mixture of 3-benzyl-3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid te/if-butyl ester (13.0 g, 43.0 mmol), palladium on carbon (4.0 g, 5%) and ethanol (100 ml, 99%) was stirred under hydrogen. The mixture was filtered on celite, dried and evaporated. A white powder was isolated. Yield 8.4 g (92%). Mp 103.4-106C. |
With palladium 10% on activated carbon; hydrogen; In methanol; at 20℃; for 4h; | To a stirred solution of compound LXVIII (0.00028 mol, 85 mg) in MeOH (5 mL) was hydrogenated with 10% Pd-C (15 mg) for 4 h at room temperature. After completion of the reaction (checked by TLC), the reaction mixture was filtered through celite and the filtrate was concentrated under reduced pressure. The crude residue was purified by column chromatography (silica gel, 60-120 mesh; MeOH-DCM, 1:9) to afford Compound LXIX in 85% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3,8-diazabicyclo[3.2.1]octane-3-carboxylic acid, phenylmethyl ester and 3-(phenylmethyl)-3,8-diazabicyclo[3.2.1]octane. Triethylamine (1.44 mL, 10.363 mmol) was added to a solution of 8-boc-3,8-diaza-bicyclo[3.2.1]ocatane (2.0 g, 9.421 mmol) in CH2Cl2 (20 mL), Benzyl chloroformate (1.46 mL, 10.363 mmol) was added dropwise at 0 C. and the reaction mixture was stirred at 0 C. for 0.5 hr, then allowed to warm to rt. and stirring was continued for 3 days. The reaction mixture was then quenched with water and acidified with 1N HCl solution. The organic layer was separated, washed with brine, dried (MgSO4) and concentrated to give a colorless thick oil as the crude product. 70 mg of this material was then dissolved in 1,2-dichloroethane (2 mL) and TFA (0.5 mL) was added. The reaction mixture was stirred at rt. for 2 hr. The solvent and TFA were then evaporated to give a mixture of the two title compounds as a colorless thick oil. | ||
Intermediates 29 and 30; <n="70"/>3,8-diazabicyclo[3.2.1]octane-3-carboxylic acid, phenylmethyl ester and 3- (phenylmethyl)-3,8-diazabicyclo [3.2.1] octane. Triethylamine (1.44 mL, 10.363 mmol) was added to a solution of 8-boc-3,8-diaza-bicyclo[3.2. l]ocatane (2.0 g, 9.421 mmol) in CH2CI2 (20 mL), Benzyl chloroformate (1.46 mL, 10.363 mmol) was added dropwise at 00C and the reaction mixture was stirred at 00C for 0.5 hr, then allowed to warm to rt. and stirring was continued for 3 days. The reaction mixture was then quenched with water and acidified with IN HCl solution. The organic layer was separated, washed with brine, dried (MgSO4) and concentrated to give a colorless thick oil as the crude product. 70 mg of this material was then dissolved in 1,2- dichloroethane (2mL) and TFA (0.5 mL) was added. The reaction mixture was stirred at rt. for 2 hr. The solvent and TFA were then evaporated to give a mixture of the two title compounds as a colorless thick oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | EXAMPLE 2; 3,8-Diazabicyclo[3.2.1]octane-8-carboxylic acid, 3-[[8-cyclohexyl-5-[[[(dimethylamino)sulfonyl]amino]carbonyl]-1,12b-dihydro-11-methoxycycloprop[d]indolo[2,1-a][2]benzazepin-1a(2H)-yl]carbonyl]-1,1-dimethylethyl ester, (+/-)-. TBTU (131 mg, 0.408 mmol) and DIPEA (0.237 mL, 1.36 mmol) were added to a solution of (+/-) cycloprop[d]indolo[2,1-a][2]benzazepine-1a(2H)-carboxylic acid, 8-cyclohexyl-5-[[[(dimethylamino)sulfonyl]amino]carbonyl]-1,12b-dihydro-11-methoxy- (150 mg, 0.272 mmol) in DMSO (4.0 mL). The reaction mixture was stirred at rt for 15 min. 8-Boc-3,8-diaza-bicyclo[3.2.1]octane (86.7 mg, 0.408 mmol) was then added and the reaction mixture was stirred at rt overnight. It was then concentrated and the residue was purified by preparative reverse phase HPLC to give the title product as a light yellow solid, (110 mg, 54% yield). MS m/z 746(MH+), Retention time: 3.040 min. 1H NMR (300 MHz, MeOD) delta ppm 0.17 (m, 0.25 H) 1.08 (m, 0.25 H) 1.17-2.28 (m, 24.5 H) 2.38-3.12 (m, 8 H) 3.43-4.43 (m, 10 H) 4.76-4.85 (m, 0.25 H) 4.96-5.19 (m, 0.75 H) 7.02 (dd, J=8.60, 2.38 Hz, 1 H) 7.17 (d, J=2.19 Hz, 0.25 H) 7.20 (d, J=2.20 Hz, 0.75 H) 7.26-7.39 (m, 1 H) 7.49-7.70 (m, 1 H) 7.80-8.00 (m, 1.75 H) 8.12 (s, 0.25 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With triethylamine; In dichloromethane; at 20℃; for 22h; | INTERMEDIATE 61; 3-Benzyl 8-tert-butyl 3,8-diazabicyclo[3.2.11octane-3,8-dicarboxylate; A mixture of 8-ter/~butoxycarbonyl-3,8-diazabicyclo[3.2.1]octane (238 mg, 1.12 mmol), benzyl chloroformate (160 muL, 1.12 mmol) and triethylamine (280 muL, 2.0 mmol) in DCM (20 mL) was stirred at room temperature for 22 h. The reaction mixture was diluted with DCM (20 mL) and washed with water (25 mL). The organic phase was dried (magnesium sulfate) and the solvent was removed in vacuo to give the title compound(336 mg, 87%) as a clear oil. deltaH (DMSO-d6) 7.45-7.28 (5H, m), 5.17-5.03 (2H, m), 4.18- 4.06 (2H, m), 3.79-3.69 (2H, m), 3.10-2.90 (2H, m), 1.85-1.72 (2H, m), 1.60-1.49 (2H, m), 1.41 (9H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium carbonate; In N,N-dimethyl-formamide; at 100℃; for 0.666667h; | The 4-(3,8-diazabicyclo[3.2.1]oct-3-yl)-2-(2-difluoromethylbenzimidazol-l-yl)- 6-morpholinopyrimidine used as a starting material was prepared as follows :-; A mixture of 4-chloro-2-(2-difluoromethylbenzimidazol- 1 -yl)-6-morpholinopyrimidine (0.15 g), f°rt-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (0.109 g), sodium carbonate (0.071 g) and DMF (4 ml) was heated to 1000C under nitrogen in a sealed vessel in a microwave oven for 40 minutes. The reaction mixture was cooled to ambient temperature and diluted with water (50 ml). The resultant solid was isolated by filtration. There was thus obtained 4-(8-tert-butoxycarbonyl-3 ,8-diazabicy clo [3.2.1 ]oct-3 -yl)- 2-(2-difluoromethylbenzimidazol-l-yl)-6-morpholinopyrimidine which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 7 steps 1: toluene / 85 °C 2: xylene / Heating 3: 230 °C 4: H2; HCl / Pd/C / H2O / 85 h / 760 Torr 5: LiAlH4 / diethyl ether / Heating 6: CH2Cl2 / 20 °C 7: 72 percent / H2 / Pd/C / methanol / 760 Torr | ||
Multi-step reaction with 7 steps 1: toluene / 16 h / 85 °C 2: 5,5-dimethyl-1,3-cyclohexadiene / 18 h / Inert atmosphere; Reflux 3: 3 h / 210 - 220 °C / 760.05 Torr 4: hydrogenchloride; palladium 10% on activated carbon; hydrogen / methanol; water / 4 h / 20 °C 5: lithium aluminium tetrahydride / diethyl ether / 30 h / 0 - 20 °C / Inert atmosphere 6: dichloromethane / 16 h / 20 °C 7: palladium 10% on activated carbon; hydrogen / methanol / 4 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In DMF (N,N-dimethyl-formamide); at 120℃; for 48h; | tert-Butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (435 mg, 2.26 mmol), <strong>[96424-68-9]2-bromo-3-chloropyridine</strong> (400 mg, 1.88 mmol), and potassium carbonate (390 mg, 2.83 mmol) were combined in dry dimethylformamide (10 mL) and stirred at 120 C. for 48 hours. The mixture was allowed to cool room temperature, diluted with ethyl acetate, filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by chromatography on silica gel (85:15 hexanes:ethyl acetate) to provide the title compound. MS (ESI) m/z: 268 (100%), 324.0 (M+H)+; 1H NMR (CDCl3) delta 1.48 (s, 9H), 1.92 (m, 2H), 2.07 (m, 2H), 3.13 (d, 2H), 3.59 (br, 2H), 4.30 (br, 2H), 6.84 (dd, 1H), 7.58 (dd, 1H), 8.17 (dd, 1H). | |
With potassium carbonate; In DMF (N,N-dimethyl-formamide); at 120℃; for 48h; | Example 23J tert-butyl 3-(3-chloro-2-pyridinyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate tert-Butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (435 mg, 2.26 mmol), <strong>[96424-68-9]2-bromo-3-chloropyridine</strong> (400 mg, 1.88 mmol), and potassium carbonate (390 mg, 2.83 mmol) were combined in dry dimethylformamide (10 mL) and stirred at 120 C. for 48 hours. The mixture was allowed to cool room temperature, diluted with ethyl acetate, filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by chromatography on silica gel (85:15 hexanes:ethyl acetate) to provide the title compound. MS (ESI) m/z: 268 (100%), 324.0 (M+H)+; 1H NMR (CDCl3) delta1.48 (s, 9H), 1.92 (m, 2H), 2.07 (m, 2H), 3.13 (d, 2H), 3.59 (br, 2H), 4.30 (br, 2H), 6.84 (dd, 1H), 7.58 (dd, 1H), 8.17 (dd, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
22% | With caesium carbonate; 1,3-bis[2,6-diisopropylphenyl]imidazolium chloride;tris-(dibenzylideneacetone)dipalladium(0); In toluene; at 85℃; for 72h; | EXAMPLE 1J 3-(6-Phenyl-pyridazin-3-yl)-3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic Acid Tert-Butyl Ester To the product of Example 11 (1.2 g, 5.65 mmol) in 50 mL toluene was added <strong>[20375-65-9]3-chloro-6-phenylpyridazine</strong> (Aldrich, 1.62 g, 8.48 mmol), 1,3-bis(2,6-di-1-propylphenyl)imidazolium chloride (Strem, 0.144 g, 0.34 mmol), tris(dibenzylideneacetone)dipalladium (0) (Pd2(dba)3, Strem, 0.104 g, 0.113 mmol), and Cs2CO3 (2.03 g, 6.2 mmol). This mixture was degassed three times with N2 backflushing then was warmed to 85 C. and stirred for 72 h. The reaction was cooled to ambient temperature, filtered, concentrated under reduced pressure and purified via column chromatography (SiO2, 50% hexanes-EtOAc) to give 0.45 g of the title compound (1.2 mmol, 22% yield). MS (DCI/NH3) m/z 367 (M+H)+. |
With 1,3-bis(2,6-di-1-propylphenyl)imidazolium chloride; caesium carbonate;tris-(dibenzylideneacetone)dipalladium(0); In toluene; at 85℃; for 12 - 72h; | Method (A): The bicyclic secondary amine (5 mmol) was combined with <strong>[20375-65-9]3-chloro-6-phenylpyridazine</strong> (Aldrich, 7.5 mmol) in toluene (50 mL). Cesium carbonate (5.5 mmol), 1,3-bis(2,6-di-1-propylphenyl)imidazolium chloride (Strem, 0.3 mmol), tris(dibenzylideneacetone)dipalladium (0) (Pd2(dba)3, Strem, 0.2 mmol) were added, and the mixture was evacuated, then purged with N2 (three times). The mixture was warmed under N2 to 85 C. for 12-72 h. The reaction was cooled to room temperature, filtered and concentrated under reduced pressure. The residue was purified by column chromatography to provide respective aminopyridazine. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With potassium carbonate; In methanol; water; at 20℃; for 16h; | EXAMPLE 1I 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic Acid Tert-Butyl Ester To the product of Example 1H (2.0 g, 6.5 mmol) in 57 mL CH3OH and 11 mL H2O was added 2.8 g K2CO3 (20.3 mmol). The mixture stirred for 16 h at ambient temperature then was filtered, concentrated under reduced pressure and purified via column chromatography (SiO2, 50% hexanes-EtOAc) to give 1.2 g of the title compound (5.65 mmol, 87% yield). MS (DCI/NH3) m/z 213 (M+H)+. |
87% | With water; potassium carbonate; In methanol; at 20℃; for 16h; | Example 1I 3,8-Diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester To the product of Example 1H (2.0 g, 6.5 mmol) in 57 mL CH3OH and 11 mL H2O was added 2.8 g K2CO3 (20.3 mmol). The mixture stirred for 16 h at ambient temperature then was filtered, concentrated under reduced pressure and purified via column chromatography (SiO2, 50% hexanes-EtOAc) to give 1.2 g of the title compound (5.65 mmol, 87% yield). MS (DCl/NH3) m/z 213 (M+H)+. |
With ammonia; water; In methanol; at 20℃; | tert-Butyl 3-(trifluoroacetyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (6.54 mmol) in methanol (85 mL) was treated with ammonium hydroxide (8.5 mL) and stirred overnight at room temperature. The mixture was concentrated under reduced pressure and purified by chromatography on silica gel (5% MeOH, 0.5% NH4OH in CH2Cl2; then 10% MeOH, 1% NH4OH in CH2Cl2) to provide the title compound. MS (DCI/NH3) m/z: 213 (M+H)+; 1H NMR (CDCl3) delta 1.47 (s, 9H), 1.81 (m, 2H), 1.94 (m, 2H), 2.65 (dd, 2H), 3.00 (br, 2H), 4.11 (br, 2H). |
With ammonium hydroxide; In methanol; at 20℃; | Example 23I tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate tert-Butyl 3-(trifluoroacetyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (6.54 mmol) in methanol (85 mL) was treated with ammonium hydroxide (8.5 mL) and stirred overnight at room temperature. The mixture was concentrated under reduced pressure and purified by chromatography on silica gel (5% MeOH, 0.5% NH4OH in CH2Cl2; then 10% MeOH, 1% NH4OH in CH2Cl2) to provide the title compound. MS (DCI/NH3) m/z: 213 (M+H)+; 1H NMR (CDCl3) delta 1.47 (s, 9H), 1.81 (m, 2H), 1.94 (m, 2H), 2.65 (dd, 2H), 3.00 (br, 2H), 4.11 (br, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 120℃; for 18h; | The MONOCHLORO compound of preparation 159 (100MG, 0. 27MOL), tert-butyl 3, 8-diazabicyclo [3.2. 1] octane-8-carboxylate (Tet. Lett. 43 (2002), 899-902) (229mg, 1. 08MMOL) and N-ETHYIDIISOPROYLAMINE (232, UL, 1. 33mmol) were dissolved in DIMETHYLSULFOXIDE (3mL) and the reaction mixture heated to 120C for 18 hours in a sealed vessel. The reaction mixture was diluted with dichloromethane and washed with water (x2), 10% aqueous citric acid solution and brine. The organic phase was dried over magnesium sulphate and concentrated in vacuo. The residue was purified by column chromatography on silica gel eluting with DICHLOROMETHANE : methanol (100: 0 to 95: 5) to yield the title product. 1H NMR (CD30D, 400MHZ) 8 : 1.11 (t, 3H), 1.50 (s, 9H), 1.79 (m, 2H), 1.92 (m, 2H), 2.39 (s, 3H), 3.14 (m, 2H), 3.43 (s, 3H), 3.58 (q, 2H), 3.87 (t, 2H), 4.33 (m, 2H), 4.39 (m, 2H), 4.67 (m, 4H), 6.91 (d, 1H), 8.13 (d, 1H), 8.18 (s, 1H). LRMS: M/Z APCI+ 553 [MH] + |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With cesium fluoride; In dimethyl sulfoxide; at 110℃; for 18h; | A mixture of the chloro compound from preparation 171 (150mg, 0. 42MOL), TERT-BUTYL 3, 8-DIAZABICYCLO [3.2. 1] OCTANE-8-CARBOXYLATE (Tet. Lett. 43 (2002), 899- 902) (446mg, 2. 1 MMOL), and caesium fluoride (63. 8mg, 0. 42MMOL) in dimethylsulfoxide (3mL) was heated at 110C for 18 hours in a sealed vessel. The reaction was poured into water, and the resulting precipitate filtered off. This solid was dissolved in dichloromethane, and the solution evaporated in vacuo. The solid was REDISSOLVED in DICHLOROMETHANE (6mL), trifluoroacetic acid (2mL) added, and the solution stirred at room temperature for 3 hours. The mixture was concentrated in vacuo and the residue partitioned between DICHLOROMETHANE and 2N hydrochloric acid and the layers separated. The aqueous solution was basified using solid sodium carbonate and then extracted with DICHLOROMETHANE (3x). These organic extracts were dried over magnesium sulphate and evaporated in vacuo. The crude product was purified by column chromatography on silica gel using an elution gradient of DICHLOROMETHANE : methanol : 0.88 ammonia (100: 0: 0 to 98: 2: 0.25) to give the title compound as a yellow solid, 65mg. H NMR (CD30D, 400MHZ) 8 : 0.73 (t, 3H), 1.57 (m, 2H), 1.75-1. 86 (m, 4H), 2.40 (s, 3H), 2.44 (s, 3H), 3.11 (m, 2H), 3. 48 (t, 2H), 3.60 (m, 2H), 3.84 (t, 2H), 4.27 (m, 2H), 4.65 (t, 2H), 6.90 (d, 1H), 7.66 (m, 1H), 8.10 (BRD, 1H). LRMS: M/Z APCI+ 437 [MH] + |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 120℃; for 18h; | A mixture of the chloro compound from preparation 193 (150mg, 0. 35MMOL), ter-butyl 3, 8-DIAZABICYCLO [3.2. 1] OCTANE-8-CARBOXYLATE (J. Med. Chem. 1998,41, 674) (160mg, 0. 72MMOL) and N-ETHYIDIISOPROPYLAMINE (244RL, 1. 4MMOL) in DIMETHYLSULFOXIDE (3mL) were heated at 120C for 18 hours in a REACTIVIAL . The mixture was poured into water, and extracted with dichloromethane (2x). The combined organic fractions were washed with water, dried over magnesium sulphate and evaporated in vacuo The residual oil was dissolved in DICHLOROMETHANE (6mL), trifluoroacetic acid (2mL) added, and the solution stirred at room temperature 3 hours. The reaction was concentrated in vacuo, the residue partitioned between DICHLOROMETHANE and 2N hydrochloric acid and the layers separated. The aqueous phase was washed with DICHLOROMETHANE, then basified using solid sodium bicarbonate. This solution was extracted with dichloromethane (3x), these combined organic extracts dried over magnesium sulphate and evaporated in vacuo The crude product was purified by column chromatography on silica gel using an elution gradient of DICHLOROMETHANE : methanol : 0.88 ammonia (98: 2: 0.25 to 96: 4: 0.5) to afford the title compound as a yellow foam, 80MG. 1H NMR (CD30D, 400MHZ) 8 : 1.76-1. 84 (m, 4H), 2.39 (s, 3H), 3.15 (m, 2H), 3.42 (s, 3H), 3.59 (m, 2H), 4.02 (q, 2H), 4.10 (t, 2H), 4.28 (m, 2H), 4.68 (s, 2H), 4.77 (t, 2H), 6.92 (m, 1 H), 8.13 (m, 2H). LRMS: M/Z APCI 507 [MH] + |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 10A tert-butyl 3-(6-nitro-3-pyridinyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate tert-Butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (0.4 g; 1.9 mmol), prepared as described in (J. Med. Chem., (1998) 41, 674), 5-bromo-2-nitropyridine (0.43 g; 2.27 mmol), prepared as described in (J. Am. Chem. Soc., (1945) 67, 668), and triethylamine (0.23 g; 2.27 mmol) in toluene (10 mL) were heated at reflux for 14 hours. After evaporation of the solvent, additional triethylamine (0.23 g) was added and the mixture further heated at 140 C for 2 hours. The residue was purified on SiO2 (CH2Cl2:EtOAc 9:1) to provide the title compound. | ||
With triethylamine; In dimethyl sulfoxide; at 110℃; for 16h;Inert atmosphere; | Step I tert-butyl 3-(6-nitro-3-pyridyl}-3,8-diazabicyclo[3.2.1]octane-8-carboxylate To a solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (1.00 g, 4.71 mmol, 1.00 equivalent) in dimethylsulfoxide (20.00 mL) were added triethylamine (1.43 g, 14.13 mmol, 3.00 equivalents) and 5-bromo-2-nitro-pyridine (1.15 g, 5.65 mmol, 1.20 equivalents). The mixture was stirred at 100C for 16 hours. LC/MS showed completion of the reaction. 40 mL of water was added to the mixture until the mixture was cooled to 20C. The aqueous phase was subjected to extraction using dichloromethane (50 mL*2), washed with saturated brine (50 mL*1), dried over anhydrous sodium sulfate, filtered and concentrated. The crude product was purified by being beaten in methanol (2 mL*3) to give the title compound (639.00 mg, crude product) as a yellow solid. 1H NMR (400MHz, CDCl3) delta 8.18 (d, J = 9.2 Hz, 1H), 8.09 (d, J = 3.0 Hz, 1H), 7.15 (dd, J = 9.2 Hz, 3.0 Hz, 1H), 4.47 (br. s., 2H), 3.58 (d, J = 10.0 Hz, 2H), 3.27 (br. s., 2H), 2.12-1.99 (m, 2H), 1.86-1.76 (m, 2H), 1.49 (s, 9H). LC/MS (ESI) m/z: 335.2 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 4-methyl-morpholine; (benzotriazo-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate; In dichloromethane; at 20℃; for 5h; | To a mixture of hydroxycarboxylic acid product from Step 5 (60 mg, 0.144mmol) and <strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (61 mg,0.29 mmol) in DCM (1.0 mL) was added BOP reagent (65 mg, 0.144 mmol) followedby N-methylmorpholine (47 pL, 0.43 mmol). The mixture was stirred at RT for 5 h.The mixture was quenched with brine, extracted with EtOAc and DCM. Combinedorganic phases were dried over magnesium sulfate and concentrated. The residue was purified by flash-chromatography over silica gel (eluted with 4% MeOH in DCM)to furnish 60 mg of hydroxyamide. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | With triethylamine; In tetrahydrofuran; at 180℃; for 0.166667h; | 3-Pyrimidin-2-yl-<strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> A solution of 3,8-diaza-bicyclo[3,2,1]octane-8-carboxyli acid tert-butyl ester (50 mg, 0.24 mmol), 2-chloropyrimidine (27 mg, 0.24 mmol), triethylamine (0.1 ml, 0.72 mmol) and THF (2.5 ml) was heated at 180 C. for 10 minutes. The solution was concentrated to afford a solid residue that was dissolved in dichloromethane, which was washed sequentially with sat. aq. sodium bicarbonate and brine, dried (Na2SO4), filtered, and concentrated to afford 50 mg (71 %) of the product as a brown solid: 1H NMR (400 MHz, CDCl3): delta 8.30 (d, J=12.0 Hz, 2H), 6.52 (t, J=12.0 Hz, 1 H), 4.38-4.29 (m, 4H), 3.13 (sb, 2H), 2.42 (m, 2H), 1.69 (q, J=18.0 Hz, 2H), 1.49 (s, 9H); MS (M+1)=291. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3,8-diazabicyclo[3.2.1]octane-3-carboxylic acid, phenylmethyl ester and 3-(phenylmethyl)-3,8-diazabicyclo[3.2.1]octane. ; Triethylamine (1.44 mL, 10.363 mmol) was added to a solution of 8-boc-3,8-diaza-bicyclo[3.2.1]ocatane (2.0 g, 9.421 mmol) in CH2Cl2 (20 mL), Benzyl chloroformate (1.46 mL, 10.363 mmol) was added dropwise at 0 C. and the reaction mixture was stirred at 0 C. for 0.5 hr, then allowed to warm to rt. and stirring was continued for 3 days. The reaction mixture was then quenched with water and acidified with 1N HCl solution. The organic layer was separated, washed with brine, dried (MgSO4) and concentrated to give a colorless thick oil as the crude product. 70 mg of this material was then dissolved in 1,2-dichloroethane (2 mL) and TFA (0.5 mL) was added. The reaction mixture was stirred at rt. for 2 hr. The solvent and TFA were then evaporated to give a mixture of the two title compounds as a colorless thick oil. | ||
With triethylamine; In dichloromethane; at 0 - 20℃; for 72.5h; | Intermediate 14 and 15 3,8-diazabicyclo[3.2.1]octane-3-carboxylic acid, phenylmethyl ester and 3-(phenylmethyl)-3,8-diazabicyclo[3.2.1]octane. Triethylamine (1.44 mL, 10.363 mmol) was added to a solution of 8-boc-3,8-diaza-bicyclo[3.2.1]ocatane (2.0 g, 9.421 mmol) in CH2Cl2 (20 mL), Benzyl chloroformate (1.46 mL, 10.363 mmol) was added dropwise at 0 C. and the reaction mixture was stirred at 0 C. for 0.5 hr, then allowed to warm to rt. and stirring was continued for 3 days. The reaction mixture was then quenched with water and acidified with 1N HCl solution. The organic layer was separated, washed with brine, dried (MgSO4) and concentrated to give a colorless thick oil as the crude product. 70 mg of this material was then dissolved in 1,2-dichloroethane (2 mL) and TFA (0.5 mL) was added. The reaction mixture was stirred at rt. for 2 hr. The solvent and TFA were then evaporated to give a mixture of the two title compounds as a colorless thick oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32% | With 2-(1H-9-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluroniumhexafluorophosphate; triethylamine; In N,N-dimethyl-formamide; at 20℃; for 1h; | 3,8-Diazabicyclo[3.2.1]octane-8-carboxylic acid, 3-[[13-cyclohexyl-10-[[[(dimethylamino)sulfonyl]amino]carbonyl]-3-methoxy-7H-indolo[2,1-a][2]benzazepin-6-yl]carbonyl]-, 1,1-dimethylethyl ester. To a stirred solution of 13-cyclohexyl-N-[(dimethylamino)sulfonyl]-3-methoxy-7H-indolo[2,1-a][2]benzazepine-10-carboxamide-6-carboxylic acid (300 mg, 0.56 mmol), <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (150 mg, 0.71 mmol) and triethylamine (0.25 mL) in DMF (2.5 mL) was added HATU (250 mg, 0.66 mmol). The reaction mixture was stirred at rt for 1 h, diluted with H2O (10 mL), acidified with 1M HCl (aq.). (0.5 mL) and the precipitate was collected by filtration and flushed with H2O. The solids were dissolved into MeOH/DMF (1:1) and purified by preparative HPLC (CH3CN/H2O with 10 mM NH4OAc) to yield 3,8-diazabicyclo[3.2.1]octane-8-carboxylic acid, 3-[[13-cyclohexyl-10-[[[(dimethylamino)sulfonyl]amino]carbonyl]-3-methoxy-7H-indolo[2,1-a][2]benzazepin-6-yl]carbonyl]-, 1,1-dimethylethyl ester (130 mg, 0.18 mmol, 32%) as a yellow solid. 1HNMR (300 MHz, CDCl3) delta 8.85 (br s, 1H), 8.08 (s, 1H), 7.85 (d, J=8.4 Hz, 1H), 7.47 (d, J=8.4 Hz, 1H), 7.44 (d, J=8.8 Hz, 1H), 7.03 (dd, J=2.6, 8.8 Hz, 1H), 6.86 (d, J=2.6 Hz, 1H), 6.75 (s, 1H), 5.25-5.00 (m, 1H), 4.49-4.01 (m, 3H), 3.88 (s, 3H), 3.35-2.90 (m, 2H), 3.03 (s, 6H), 2.86-2.72 (m, 1H), 2.12-1.12 (m, 16H), 1.41 (s, 9H). LCMS: m/e 730 (M-H)-, ret time 3.41 min, column A, 4 minute gradient. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydrogencarbonate; In N,N-dimethyl-formamide; at 90 - 105℃; for 1.25h; | The l-[6-(3,8-diazabicyclo[3.2.1]oct-3-yl)-2-morpholin-4-yl-pyrimidin-4-yl]-2-(difluoromethyl)benzoimidazole used as a starting material was prepared as follows:-; A mixture of l-(6-chloro-2-morpholin-4-yl-pyrimidin-4-yl)-2- (difluoromethyl)benzoimidazole (0.147 g), tert-bvyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (0.090 g), sodium bicarbonate (0.222 g) and DMF (2 ml) was heated under nitrogen to 90C for 15 minutes and then at 105C for 1 hour. The resultant mixture was cooled, filtered and evaporated. The residue was taken into dichloromethane (1.0 ml) and trifluoroacetic acid (1.0 ml), shaken at ambient temperature for 1 hour and evaporated. The residue was dissolved in methanol (5 ml), filtered and added to an Isolute SCX-3 cation exchange cartridge (5 g), followed by methanol (30 ml). The product was then eluted by addition of a 7M solution of ammonia in methanol (10 ml) and the eluent evaporated. There was thus obtained l-[6-(3,8-diazabicyclo[3.2.1]oct-3-yl)-2-morpholin-4-yl-pyrimidin-4-yl]-2- (difluoromethyl)benzoimidazole (0.15Og); Mass Spectrum: M+H+ 422. HPLC: method Al, Retention Time 2.11 minutes. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
66% | With triethylamine; In isopropyl alcohol; at 180℃; for 0.5h;Microwave irradiation; | 6.3. Example 3N-(3-bromophenyl)-3-(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxamide A. Preparation of tert-butyl 3-(5-methyl-7H-pyrrolo [23-d]pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate. To a solution of 4-chloro-5-methyl-7H-pyrrolo[2,3-d]pyrimidine (25 mg, 0.15 mmol) and <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (30 mg, 0.14 mmol) in isopropanol (2 ml) was added triethylamine (36 muL, 0.26 mmol). The reaction was heated at 180 C. for 30 min in the microwave, then concentrated under vacuum. The residue was purified by prep HPLC (Sunfire C18 30×50 mm, 10-90% H2O/MeOH w/0.01% TFA, 15 min, 35 ml/min, 220 nm) to give tert-butyl 3-(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 0.10 mmol, 66%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | Step D: 3,8-Diaza-bicyclo[3.2.1]octane-3-carboxylic acid amide hydrochloride. A solution of <strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (2.5 g, 11.7 mmol) in CH2Cl2 (50 mL) was treated with trimethylsilyl isocyanate (14 mL, 117 mmol). The resultant mixture was stirred at rt for 4 h., concentrated and redissolved in CH2Cl2 (50 mL). To this solution was added HCl (4.0 N in 1,4-dioxane, 12 mL), and the resultant mixture was stirred at rt for 3 h. Concentration afforded the title compound as a white powder (2.4 g, 99%). MS (ESI): mass calcd. for C7H13N3O, 155.1; m/z found, 156.2 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In dichloromethane; at 0℃; for 2h; | To a solution of <strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (212 mg, 1.0 mmol) in DCM (4 mL) were added triethylamine (208 muL, 1.5 mmol) and trifluoroacetic anhydride (169 muL, 1.2 mmol) at 0 C and the mixture stirred at 0 C for 2 h. The reaction mixture was concentrated in vacuo and the resultant residue was purified by column chromatography to give 3-(2,2,2-trifluoro-acetyl)-3,8-diaza-bicyclo[3.2.1]octane-8- carboxylic acid tert-butyl ester as a colourless oil. | |
With triethylamine; In dichloromethane; at 0 - 20℃; for 2h; | Step 1: Into a 10 mL round bottom flask containing a solution of tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.33 mmol) in dichloromethane (2 mL) at 0 oC were added triethylamine (0.14 mL, 0.99 mmol) and trifluoroacetic anhydride (0.1 mL, 0.49 mmol) and the reaction mixture was stirred at room temperature for 2 h. The reaction mixture was treated with water (3 mL) and extracted with dichloromethane (3 x 10 mL). The combined organic layers were washed with brine (20 mL), dried over anhydrous sodium sulfate, filtered, concentrated under reduced pressure and purified by flash chromatography (silica gel) eluting with 20-30% ethyl acetate in petroleum ether to afford tert-butyl 3-(2,2,2-trifluoroacetyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate as a liquid. MS calc?d [M-Boc+H]+ 209.1, found 209.4 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In dichloromethane; for 1h; | Step 1: 3-(9H-Fluoren-9-yl)methyl 8-tert-butyl 3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate[00682] A solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (105 mg, 0.5 mmol) in dichloromethane (3 niL) and triethylamine (100 mg, 138 muL, 1.0 mmol) was treated with 9H-fluoren-9-ylmethyl carbonochloridate (128.0 mg, 0.5 mmol). The reaction mixture was stirred for 1 h. The reaction mixture was washed with 1 N HCl, water, 50% saturated bicarbonate and brine. The organic layer was dried over Na2SO4, filtered and concentrated to obtain a solution of 3-(9H-fluoren-9-yl)methyl 8-tert-butyl 3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate in DCM (2 mL), which was used directly for the next step. LC/MS m/z 435.5 [M+H]+. | |
With N-ethyl-N,N-diisopropylamine; In dichloromethane; at 25℃; for 10h;Inert atmosphere; | Intermediate M: Preparation of 3,8-Diaza-bicyclo[3.2.1]octane-3-carboxylic acid 9H- fluoren-9-ylmethyl ester · TFA (M) To a chilled solution of M-1 (1.00 g, 4.71 mmol) in DCM (50 mL) is added M-2 (1.22 g, 4.71 mmol) followed by DIPEA (900muL·, 5.17 mmol). After 10 h, the reaction is poured into water (100 mL) and extracted with DCM (100 mL). The organic layer is washed with 10% aqueous citric acid (100 mL), saturated aqueous NaHCC>3 (100 mL) and brine (100 mL), dried over MgS04, filtered and concentrated. The residue is purified on Si02 (0-50% EtOAc in heptane) to afford M-3. To a stirred solution of the M-3 (1.90 g, 4.37 mmol) in DCM (10 mL) is added TFA (10 mL). After 20 h, the mixture is concentrated to give the title product (M). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; | Step 1Preparation of 3-(6-Amino-pyridazine-3-carbonyl)-3,8-diaza-bicyclo[3.2.1 joctane-8- carboxy.ic acid tert-butyl ester. To a solution of 6-amino-pyridazine-3-carboxylic acid (212 mg, 1.0 mmol) in DMF (5 mL) was added 3,8-diaza-bicyclo[3.2.1 joctane-8- carboxylic acid tert-butyl ester (139 mg, 1.0 mmol), HATU (456 mg, 1.2 mmol) and N,N- diisopropylethylamine (0.52 mL, 3.0 mmol). The mixture was stirred at room temperature overnight after which it was diluted with EtOAc, washed with brine, dried over Na2S04, concentrated and purified over normal silica with 0-20% MeOH/DCM which gave a white solid (169 mg, 0.51 mmol). MS m/z 334.4 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95.7% | With triethylamine; In tetrahydrofuran; at 90℃; for 44h;Inert atmosphere; sealed tube; | To a solution of tert-bv yl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (67.1 mg, 0.316 mmol) and l-(trifluoromethyl)cyclobutyl lH-imidazole-l-carboxylate (88.8 mg, 0.379 mmol) in THF (2 mL) under nitrogen in a sealed tube was added triethylamine (88.0 muEpsilon, 0.632 mmol). The mixture was heated at 90 C for 20 h. The reaction was not complete and thus more 1- (trifluoromethyl)cyclobutyl lH-imidazole-l-carboxylate (88.8 mg, 0.379 mmol) andtriethylamine (88.0 muEpsilon, 0.632 mmol) were added and the reaction was continued to heat at 90 C for an additional day. The mixture was concentrated under reduced pressure and purified by Biotage column chromatography to afford the title compound as colorless oil (114.4 mg, 95.7%). Exact mass calculated for C17H25F3N2O4: 378.2, found: LCMS mlz = 379.2 [M+H]+; lU NMR (400 MHz, CDC13) delta ppm 1.47 (s, 9H), 1.61-1.77 (m, 2H), 1.79-2.05 (m, 4H), 2.45-2.64 (m, 2H), 2.67-2.80 (m, 1H), 2.80-2.93 (m, 1H), 3.03 (bs, 1H), 3.16 (bs, 1H), 3.69 (d, 1H), 3.83 (d, J = 12.88 Hz, 1H), 4.21 (bs, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; N,N-dimethyl acetamide;bis(tri-t-butylphosphine)palladium(0); at 100℃; for 18h; | Anhydrous dimethylacetamide (4.75 mL, degassed prior to use) was added to a mixture of 5-chloro-l-(2,2-dimethylpropyl)-3-methyl-l,3-dihydro-2H-imidazo[4,5-¾]pyridin-2- one (1-4, 1.0 g, 3.94 mmol), potassium phosphate tribasic (1.67 g, 7.88 mmol), bis(tri-t- butylphosphine)palladium(O) (81 mg, 0.158 mmol), and tert-butyl 3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (1.26 g, 5.91 mmol). The resulting suspension was heated to 100 C for 18 h. Following this duration, the reaction contents were cooled to room temperature, filtered, and washed with acetonitrile. Purification using reverse-phase chromatography (20-100%, 0.1% TFA in H20: acetonitrile) afforded tert-butyl 3-[l-(2,2-dimethylpropyl)-3-methyl-2-oxo-2,3- dihydro-lH-imidazo[4,5-¾]pyridin-5-yl]-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (26-1) as a white solid. MS m/z (Mu+Eta): calculated = 430.2813; observed = 430.2817. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In dichloromethane; at -20 - 25℃; for 24h; | Preparation of l-(3,8-Diaza-bicyclo[3.2.1]oct-3-yl)-ethanone hydrochloride (U) To a solution of <strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (1.00 g, 4.71 mmol) and triethylamine (1.41 mL, 10.0 mmol) in DCM (20 mL) cooled to -20C is added acetyl chloride (0.36 mL, 5.0 mmol) and the reaction stirred at about 25C for 24 hours. The reaction is concentrated, suspended in EtOAc (125 mL) then washed with 0.1M HCI (100 mL), sat. NaHC03 (100 mL) and brine (50 mL). The organic layer is dried (Na2S04) and concentrated to give (U-1) as an oil. | |
With triethylamine; In dichloromethane; at -20 - 25℃; for 24h; | To a solution of <strong>[149771-44-8]3,8-diaza-bicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (1.00 g, 4.71 mmol) and triethylamine (1.41 mL, 10.0 mmol) in DCM (20 mL) cooled to -20 C. is added acetyl chloride (0.36 mL, 5.0 mmol) and the reaction stirred at about 25 C. for 24 hours. The reaction is concentrated, suspended in EtOAc (125 mL) then washed with 0.1M HCl (100 mL), sat. NaHCO3 (100 mL) and brine (50 mL). The organic layer is dried (Na2SO4) and concentrated to give (U-1) as an oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
7.4% | With tris-(dibenzylideneacetone)dipalladium(0); sodium t-butanolate; DavePhos; In 1,4-dioxane; at 100℃; for 23h;Inert atmosphere; | A mixture of rac-benzyl ((2S,3R,4R)- I -acetyl-6-bromo-2,3-dimethyl- I ,2,3,4-tetrahydroq uinolin-4- yl)carbamate (for a preparation see Intermediate 3, (74.8 mg, 0.173 mmol), tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (43.1 mg, 0.203 mmol), sodium-tert-butoxide (50.8 mg,0.529 mmol), DavePhos (14.0 mg, 0.036 mmol) and Pd2(dba)3 (16.3 mg, 0.018 mmol) had 1,4- dioxane (2 mL) added and were heated with stirring under nitrogen at 100 C for 23 h. The reaction mixture was allowed to cool to rt and filtered through a celite cartridge which was flushed with ethyl acetate. The filtrate was concentrated and purified by MDAP (Formic) to give the product (5.5 mg, 0.013 mmol, 7.40%) as a yellow gum. LCMS (2 mm Formic): Rt = 0.80 mi [MH] = 429. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In N,N-dimethyl-formamide; at 50℃; for 16h;Inert atmosphere; | A suspension of 1-fluoro-4-nitrobenzene (0.266 g, 1.884 mmol), tert-butyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (0.4 g, 1.884 mmol) and potassium carbonate (0.39 g, 2.83 mmol) in anhydrous DMF (5 mL) was heated to50 C under a nitrogen atmosphere for 16 h. The reaction mixture was allowed to cool to room temperature, partitioned between water (50 mL) and ethyl acetate (50 ml) . The ethyl acetate was separated and washed with water (3 x 20 ml), dried (anhydrous sodium sulfate),filtered and reduced in vacuo. The residue was purified by flash chromatography (0-100% ethyl acetate in cyclohexane) to afford the title compound (0.62 g, 100 %) . LCMS (Method A) : = 1.61 mi m/z = 334 [M+H]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
360 mg | With potassium carbonate; In N,N-dimethyl-formamide; at 50℃; for 16h;Inert atmosphere; | A suspension of 2-fluoro-5-nitrobenzaldehyde (0.358 g,2.120 mmol) tert-butyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (0.45 g, 2.120 mmol) and potassium carbonate(0.439 g, 3.18 mmol) in anhydrous DMF (2 mL) was heatedto 50 C under a nitrogen atmosphere for 16 h. Thereaction mixture was allowed to cool to room temperature, partitioned between water (50 mL) and ethyl acetate (50 mL) . The ethyl acetate was separated and washed with water (3 x 20 mL), dried (anhydrous sodium sulfate),filtered and reduced in vacuo. The residue was purified by flash chromatography (0-100% ethyl acetate in cyclohexane) to afford the title compound (360 mg, 0.996 mmol) . LCMS (Method C) : = 1.69 mi m/z = 384 [M+Na]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: To a stirred solution of acid VIII (0.001179 mol, 1 eq) in DMF (5 mL), EDCI (0.248 g, 0.00129 mol, 1.1 eq), HOBt (0.198 g, 0.00129 mol, 1.1 eq) and DIPEA (0.30 g, 0.00235 mol, 2 eq) were added at 0 C. and stirred for 15 minutes. A solution of amine LXIX from Example 11 (0.00117 mol, 1 eq) was then added at 0 C. and then the resulting mixture was allowed to stir at room temperature for overnight. After completion of the reaction, water (20 mL) was added and extracted with ethyl acetate (2×30 mL). The combined organic layer was dried over anhydrous Na2SO4 and concentrated under reduced pressure. The crude product was purified by column chromatography (silica gel, 60-120 mess, 70% ethyl acetate in hexane) to give LXXII in 57% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84.8% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 80℃; for 5h; | General procedure: To a solution of 12 (1000 mg, 4.71 mmol) in NMP (9.4 ml) was acdded ethyl 2-chloropyrimidine-5-carboxylate (967 mg,5.18 mmol) and diisopropyl ethylamine (913 mg, 7.07 mmol) at room temperature. The reaction mixture was stirred at 80 C for 5 h. The reaction mixture was diluted with water to afford the white precipitation. The resulting solid was collected by filtration to afford 13c (1627 mg, 95.3%) as the white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: To a solution of amine LXIX (0.00023 mol) and appropriate aldehyde (0.00023 mol) in DCM (5 mL), acetic acid (0.1 mL) was added at room temperature and the resulting mixture was allowed to stir for 30 min. Then STAB (0.100 gm, 0.00047 mol) was added to reaction mixture and the resulting mixture was allowed to stir at room temperature for 16 h. After completion of reaction, the crude mixture was diluted with DCM washed with water, dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by column chromatography (silica gel, 60-120 mesh; EtOAc-Hexane, 2:8) to afford product LXX in 70-75% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70.1% | With sodium hydrogencarbonate; potassium iodide; In acetonitrile;Reflux; | 3- (3-chloropropyl) -1H-indole-5-carbonitrile(2.80 g, 12.80 mmol),3,8-diazabicyclo [3.2.1] octane-8-carboxylic acid tert-butyl ester(2.72 g, 12.80 mmol),Sodium carbonate (2.04g, 19.21mmol) and potassium iodide (213mg, 1.28mmol) were sequentially added to acetonitrile (30 mL), and then the reaction temperature was raised, the reaction was refluxed overnight. (PE / EA (v / v) = 3/2) to give the title compound as a white solid (3.54 g, 70.1%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82.8% | In acetonitrile;Reflux; | A mixture of <strong>[22536-66-9]2-chloropyrimidine-4-carboxamide</strong> (0.74 g, 4.70 mmol), 3,8-diazabicyclo [3.2.1] octane-8-carboxylic acid tert-butyl ester (1.00 g, 4.71 mmol) and sodium carbonate(0.75 g, 7.05 mmol) was added to acetonitrile (15 mL) and the reaction was then raised in temperature and refluxed overnight. After the reaction was completed, the reaction solution was cooled to room temperature and concentrated under reduced pressure. The crude product was purified by silica gel column chromatography (petroleum ether / ethyl acetate (v / v) = 1/1) to give the title compound as a red solid (1.30 g, 82.8%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In acetonitrile; at 20 - 25℃; for 16h; | A solution of 1-(bromomethyl)-4-fluorobenzene (134 mg, 0.709 mmol) in acetonitrile (3 mL) was slowly added to a room temperature mixture of fe/f-butyl 3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (150 mg, 0.706 mmol) and potassium carbonate (293 mg, 2.12 mmol) in acetonitrile (12 mL) and the reaction mixture was stirred at 25 C for 16 hours. It was then filtered, and the filtrate was concentrated in vacuo; silica gel chromatography (Gradient: 0% to 20% ethyl acetate in petroleum ether) afforded the product as a colorless gum. Yield: 226 mg, 0.705 mmol, quantitative. 1 H NMR (400 MHz, CDCI3) delta 7.30-7.24 (m, 2H), 6.99 (br dd, J=8.8, 8.7 Hz, 2H), 4.26-4.03 (m, 2H), 3.43 (s, 2H), 2.58 (dd, J=10.7, 2.3 Hz, 2H), 2.36-2.16 (m, 2H), 1.93-1.78 (m, 4H), 1.47 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With sodium tert-pentoxide; bis(dibenzylideneacetone)-palladium(0); ruphos; In 1,4-dioxane; at 100℃; for 2h;Microwave irradiation; | A mixture of 12 (100 mg, 0.471 mmol), 1-bromo-4-(trifluoromethyl)benzene (117 mg, 0.518 mmol), Pd(dba)2 (13.54 mg,0.024 mmol), RuPhos (21.98, 0.024 mmol) and NaOt-Pen (130 mg,1.178 mmol) in 1,4-dioxane (1.0 ml) was heated at 100 C for 2 hunder microwave irradiation. After cooling to room temperature,the reaction mixture was diluted with water. The aqueous layer was separated and then extracted with EtOAc. The combined organic extracts were washed with water and brine, dried over MgSO4, filtered, and concentrated. The residue was purified by flash column chromatography (silica gel: EtOAc/hexane = 1/10) toafford 13a (157 mg, 94.0%) as the pale brown solid. 1H NMR (CDCl3)d 1.48 (s, 9H), 1.81 (d, J = 7.0 Hz, 2H), 1.98 (t, J = 4.5 Hz, 2H), 3.06 (s,2H), 3.47 (d, J = 11.3 Hz, 2H), 4.39 (s, 2H), 6.83 (d, J = 8.5 Hz, 2H),7.47 (d, J = 8.3 Hz, 2H). MS-ESI (m/z) = 357 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With sodium tert-pentoxide; bis(dibenzylideneacetone)-palladium(0); ruphos; In 1,4-dioxane; at 100℃; for 2h;Microwave irradiation; | General procedure: A mixture of 12 (100 mg, 0.471 mmol), 1-bromo-4-(trifluoromethyl)benzene (117 mg, 0.518 mmol), Pd(dba)2 (13.54 mg,0.024 mmol), RuPhos (21.98, 0.024 mmol) and NaOt-Pen (130 mg,1.178 mmol) in 1,4-dioxane (1.0 ml) was heated at 100 C for 2 hunder microwave irradiation. After cooling to room temperature,the reaction mixture was diluted with water. The aqueous layer was separated and then extracted with EtOAc. The combined organic extracts were washed with water and brine, dried over MgSO4, filtered, and concentrated. The residue was purified by flash column chromatography (silica gel: EtOAc/hexane = 1/10) toafford 13a (157 mg, 94.0%) as the pale brown solid |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95.3% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 80℃; for 5h; | To a solution of 12 (1000 mg, 4.71 mmol) in NMP (9.4 ml) was acdded ethyl 2-chloropyrimidine-5-carboxylate (967 mg,5.18 mmol) and diisopropyl ethylamine (913 mg, 7.07 mmol) at room temperature. The reaction mixture was stirred at 80 C for 5 h. The reaction mixture was diluted with water to afford the white precipitation. The resulting solid was collected by filtration to afford 13c (1627 mg, 95.3%) as the white solid. 1H NMR (CDCl3)d 1.37 (t, J = 7.2 Hz, 3H), 1.49 (s, 9H), 1.65 (dd, J = 14.0, 6.6 Hz, 2H),1.92 (t, J = 4.6 Hz, 2H), 3.21 (br, 2H), 4.34 (q, J = 7.2 Hz, 2H), 4.35(br, 2H) 4.56 (d, J = 12.8 Hz, 2H), 8.84 (d, J = 5.8 Hz, 2H). MS-ESI(m/z) = 363 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51.8% | With 1-[(1-(cyano-?2-?ethoxy-?2-?oxoethylidenaminooxy)?dimethylamino-?morpholino)]-uronium hexafluorophosphate; triethylamine; In N,N-dimethyl-formamide; at 20℃; for 1.5h; | General procedure: The mixture of 13a (151 mg, 0.423 mmol) and 4 N HCl in 1,4-dioxane solution (1.38 ml) was stirred at room temperature overnight. After concentration, the residue was crystalized with etherto afford the white precipitation. The resulting solid was collected by filtration to afford 14a (121 mg, 98.0%) as the white solid. MSESI (m/z) = 257 [M+H]+. To a solution of 4a (116 mg, 0.35 mmol)in DMF (2.3 ml) was added 14a (120 mg, 0.42 mmol), COMU (225 mg, 0.525 mmol) and Et3N (177 mg, 1.75 mmol) at room temperature.The reaction mixture was stirred at same temperature for 1.5 h. The reaction mixture was diluted with sat. NaHCO3 solution to afford the pale yellow precipitation. The resulting solid was collected by filtration to 16a |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | With potassium carbonate; In dichloromethane; at 20℃; for 15h;Inert atmosphere; | (a) Step 1 Potassium carbonate (0.163 g, 1.18 mmol) was added to 5 mL of a methylene chloride solution of the 7-(bromomethyl)-6-methoxybenzofuran-3(2H)-one (0.303 g, 1.18 mmol) described in [WO2011/136319]. Two milliliters of a methylene chloride solution of 8-Boc-3,8-diazabicyclo[3.2.1]octane (0.250 g, 1.18 mmol) was added dropwise to the reaction solution, and stirring was continued for 15 hours at room temperature. The reaction solution was filtered, and the residue obtained by concentrating the filtrate was purified by silica gel chromatography (ethyl acetate/hexane) to obtain tert-butyl 3-[(6-methoxy-3-oxo-2,3-dihydrobenzofuran-7-yl)methyl]-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (0.182 g, 39%). 1H NMR (300 MHz, CDCl3) delta 1.43 (s, 9H), 1.77 (m, 4H), 2.37 (m, 2H), 2.60 (dd, J=2.1, 11.1 Hz, 2H), 3.65 (s, 2H), 3.91 (s, 3H), 4.08-4.16 (m, 2H), 4.61 (s, 2H), 6.68 (d, J=9.0 Hz, 1H), 7.59 (d, J=9.0 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | With N,N,N,N,N,N-hexamethylphosphoric triamide; potassium carbonate; at 70℃; | Into a 100-mL round-bottom flask was added l-(2,4-difluorophenyl)ethan-l-one (2.65 g, 17.0 mmol), ferf-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (3.00 g, 14.1 mmol), potassium carbonate (5.86 g, 42.4 mmol), and HMPA (30 raL). The resulting solution was stirred overnight at 70 C in an oil bath and then cooled to RT and quenched by the addition of water (30 mL), The resulting solution was extracted with ethyl acetate (3 x 30 mL) and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (1 :5) to afford ferf-hutyl 3-(4-acetyl-3-fluorophenyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate as a brown oil (1.8 g, 30%), LCMS (ESI, m/z): 349[M+H]+ |
30% | With N,N,N,N,N,N-hexamethylphosphoric triamide; potassium carbonate; at 70℃; | (1503) [00477] Into a 100-mL round-bottom flask was added l-(2,4-difluorophenyl)ethan-l-one (2.65 g, 17.0 mmol), <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (3.00 g, 14.1 mmol), potassium carbonate (5.86 g, 42,4 mmol), and HMPA (30 mL). The resulting solution was stirred overnight at 70 C in an oil bath and then cooled to RT and quenched with water (30 mL). The resulting solution was extracted with ethyl acetate (3 x 30 mL). The combined organic layers were concentrated in vacuo to provide a crude product that was purified via silica gel chromatography and eiuted with ethyl acetate/petroleum ether (1 :5) to afford fer/-butyl 3-(4- acetyl-3-fluorophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate as brown oil (1.8 g, 30%). LCMS (ESI, m/z): 349 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
27% | With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 120℃; for 4h;Microwave irradiation; | Into a 20-mL microwave tube was added l-(3-bromo-4-fluorophenyl)ethan-l-one (3.00 g, 13.8 mmol), tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (3.67 g, 17.3 mmol), DIEA (5,48 g, 7.39 mL, 42.4 mmol), and DMSO (8 niL). The resulting solution was heated at 120 C for 4 h under microwave irradiation. The reaction mixture was cooled to RT and then poured into water (30 mL). The resulting mixture was extracted with ethyl acetate (3 x 30 mL), and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyi acetate/petroleum ether (1 :5) to afford tert-bvXyl 3-(4-acetyl-2-bromophenyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate as a yellow oil (1.5 g, 27%). LCMS (ESI, m/z): 409,411[M+H]+ |
27% | With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 120℃; for 4h;Microwave irradiation; | (1519) [00481] Into a 20-mL microwave tube was added l-(3-bromo-4-fluorophenyl)ethan-l-one (3.00 g, 13.8 mmol), fert-butyl 3,8-diazabicyclo[3.2. I ]octane-8-carboxyiate (3.67 g, 17.3 mmol), DIEA (5.48 g, 7.39 mL, 42.4 mmol), and DMSO (8 mL). The resulting solution was heated to 120 C for 4 h under microwave irradiation. The reaction mixture was cooled to RT and then quenched with water (30 mL). The resulting mixture was extracted with ethyl acetate (3 x 30 rnL). and the combined organic layers were then dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo to provide a crude product that was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (1 :5) to afford fer -butyl 3-(4- acetyl-2-bromophenyl)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate as a yello oil (1 .5 g, 27%). LCMS (ESI, m/z) 409, 411 [ I- H I . |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate; XPhos; In toluene; at 100℃;Inert atmosphere; | Into a 50-mL 3-necked round-bottom flask, purged and maintained under an atmosphere of nitrogen, was added <strong>[191170-76-0]benzyl N-[2-(4-bromophenyl)ethyl]carbamate</strong> (0.692 g, 2.07 mmol), toluene (10 mL), ieri-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (0.400 g, 1.88 mmol), s CC (1.85 g, 5.68 mmol), Pd(dppf)Ch(0.078 g, 0.10 mmol), and XPhos (0.090 g, 0.20 mmol). The resulting solution was stirred overnight at 100 C in an oil bath and then cooled to RT and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (1 : 10) to afford fert-butyl 3-[4-(2- [[(benzyloxy)carbonyl]amino]ethyl)phenyl]-3 ,8-diazabicyclo[3.2.1 ]octane-8-carboxylate as a yellow oil (440 mg, 50%). LCMS (ESI, m/z): 466[M+H]+ |
27% | With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; ruphos; In toluene; at 100℃;Inert atmosphere; | (1255) (1256) CS2CO3 (1257) Intermediate 3 (1258) Toluene, 100 C (1259) [00415] Into a 50-mL round-bottom flask, purged and maintained under an inert atmosphere of nitrogen, was added benzyl 7Y-[2-(4-bromophenyl)ethyl]carbamate (3.15 g, 9.43 mmol), tert- butyl 3,8-diazabicyclo[3.2.1 ]octatie-8-carboxylate (2.00 g, 9.43 mmol), Pd2(dba (0,800 g, 1.09 mmol), RuPhos (0.800 g, 1.71 mmol), CS2CO3 (9.00 g, 27.6 mmol) and toluene (50 mL). The reaction mixture was stirred at 100 C overnight in an oil bath. The resulting mixture was concentrated in vacuo to remove most of the solvent and then diluted with DCM (50 mL). The solids were removed by filtration, the filtrate was concentrated in vacuo, and the crude product that was purified via silica gel chromatography and eiuted with petroleum ether/ethyl acetate (3 : 1) to afford fer -Butyl 3-(4-(2-(((benzyloxy)carbonyl)amino)ethyl) phenyl)-3,8- diazabicyclo[3.2.1 ]octane-8-carboxylate as a yellow oil (1.2 g, 27%). LCMS (ESI, m/z) 466 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
67% | With tris(dibenzylideneacetone)dipalladium(0) chloroform complex; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; sodium t-butanolate; In toluene; at 70℃; for 0.75h;Inert atmosphere; | Into a 1-L round-bottom flask, purged and maintained with an inert atmosphere of nitrogen, was added l ,4-dibromo-2,5-difluorobenzene (15,0 g, 55.0 mmol), fert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (10.6 g, 49.9 mmol), Pd2(dba)3-CHC13 (2.59 g, 2.50 mmol), XantPhos (2.89 g, 5.00 mmol), sodium fert-butoxide (9.60 g, 99.9 mmol), and toluene (500 mL). The resulting solution was stirred for 45 min at 70 C and then cooled to RT and quenched by the addition water (100 mL). The resulting solution was extracted with ethyl acetate (3 x 100 mL) and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified by silica gel column and eluted with ethyl acetate/petroleum ether (1 : 10) to afford fe/f-butyl 3-(4-bromo-2,5- difluorophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate as light yellow oil (15 g, 67%). LCMS (ESI, m/z). 403,405 [M+H)+ |
With tris-(dibenzylideneacetone)dipalladium(0); 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; sodium t-butanolate; In toluene; at 70℃; for 4h;Inert atmosphere; | (1019) (1020) intermediate 31-1 (1021) [00354] Into a 100-mL round-bottom flask that purged and maintained under an inert atmosphere of nitrogen was added 4-bromo-2-chloro-l-iodobenzene (1.20 g, 3.78 mmol), benzyl piperazine-l -carboxylate (0.924 g, 4, 19 mmol), NaOtBu (1.10 g, 1 1.4 mmol), XantPhos (0.695 g, 1.20 mmol), Pd2(dba)3 (0.393 g, 0.430 mmol), and toluene (10 mL). The reaction mixture was stirred for 4 h at 60 C and then concentrated in vacuo to provide a crude product that was purified by FCC eluting with ethyl acetate/petroleum ether (1 : 10) to afford benzyl 4-(4-bromo-2- chlorophenyl)piperazine-l -carboxylate as a colorless oil (713 mg, 46%). LCMS (ESI, m/z) 409, 41 1 [ M 1 [ j .The Intermediates in Table 1 below were synthesized according to the procedures (palladium caialyzed C-N coupling) outlined above for Example 31-1, Intermediate 31-1, using the appropriate synthetic precursors. | |
With tris(dibenzylideneacetone)dipalladium(0) chloroform complex; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; sodium t-butanolate; In toluene; at 70℃; for 0.75h;Inert atmosphere; | A mixture of <strong>[327-51-5]1,4-dibromo-2,5-difluorobenzene</strong> (15.0 g, 55.0 mmol), tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (10.6 g, 49.9 mmol), Pd2(dba)3.CHCh (2.59 g, 2.50 mmol), XantPhos (2.89 g, 5.00 mmol), and sodium /ert-butoxide (9.60 g, 99.9 mmol) in toluene (500 mL) under nitrogen was stirred for 45 min at 70 C. After cooling to 25 C, the resulting mixture was concentrated under vacuum. The resulting residue was purified by silica gel column chromatography (eluting with 1 : 10 ethyl acetate/petroleum ether) to afford tert-butyl 3-(4- bromo-2,5-difluorophenyl)-3,8-diazabicyclo[3.2.l]octane-8-carboxylate as light yellow oil. LCMS: (ESI, m/z): 403, 405 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 80℃; for 24h; | Into a 100-mL round-bottom flask was added tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.00 g, 4.71 mmol), 5-bromo-2-fluorobenzonitrile1.88 g, 9.40 mmol), DIEA (1.83 g, 2.47 mL, 14.2mmol), and DMSO (25 mL). The resulting mixture was stirred for 24 h at 80 C in an oil bath and then cooled to RT and quenched by the addition of water (20 mL). The resulting solution was extracted with ethyl acetate (2 x 20 mL). and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (1 :5) to afford ferf-butyl 3-(4-bromo-2-cyanophenyl)-3,8- diazabicyclo[3.2.1 ]oetane-8-carboxylate as a yellow oil (550 mg, 30%). LCMS (ESI, m/z): 392, 394 [M+H]+ |
11% | In N,N-dimethyl acetamide; at 100℃; for 3h; | (1355) (1356) iniemsediate S3 (1357) Into a 50-mL round-bottom flask was added 5-bromo-2~fluorobenzonitrile (1.03 g, 5.17 mmol), tert-butyl 3,8-diazabicyco[3.2.1]octane-8-carboxylate (1 .00 g, 4.71 mmol), potassium carbonate (1.30 g, 9.43 mmol), and DMA (10 mL). The reaction mixture was stirred for 3 h at 100 C and then cooled and extracted with ethyl acetate (3 15 mL). The combined organic layers were then dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The resulting crude product was purified by FCC eluting with ethyl acetate/petroleum ether (1 :3) to afford tert-butyl 3-(4-bromo-2-cyanophenyl)-3,8-diazabicycio[3.2.1]octane-8- carboxylate as a light yellow oil (196 nig. 11%). LCMS (ESI, m/z) 392, 394 j M I I ] . |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With potassium carbonate; In N,N-dimethyl-formamide; at 90℃; for 4h;Inert atmosphere; | Into a 100-mL round-bottom flask, purged and maintained with an inert atmosphere of nitrogen, was added l,2-difluoro-4-nitrobenzene (1.00 g, 6.29 mmol), tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.47 g, 6.92 mmol), potassium carbonate (2.60 g, 18.8 mmol), and DMF (10 rnL). The resulting mixture was stirred for 4 h at 90 C and then cooled to RT and quenched by the addition of water (20 mL). The resulting solution was extracted with ethyl acetate (3 10 mL) and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (1 : 10) to afford fert-butyl 3-(2- fluoro-4-nitrophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate as a yellow solid (1.93 g, 87%). LCMS (ESI, m/z): 352 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32% | With palladium diacetate; caesium carbonate; ruphos; In toluene; at 100℃; for 2h;Inert atmosphere; | Into a 50-mL 3 -necked round-bottom flask, purged and maintained with an inert atmosphere of nitrogen, was added benzyl N-[2-(4-bromo-2-fluorophenyl)ethyl]carbamate (0,500 g, 1.42 mmol), er -butyl 3 , 8-diazabicy clo[3.2.1 ]octane-3 -carboxyl ate (0.320 g, 1.51 mmol), Cs ··( (); (1.40 g, 4.30 mmol), Pd(OAc)?. (0.032 g, 0.14 mmol), RuPhos (0.13 g, 0.29 mmol), and toluene (10 mL). The resulting mixture was stirred for 2 h at 100 C in an oil bath and then cooled to RT and quenched by the addition of water (20 mL). The resulting solution was extracted with ethyl acetate (3 x 20 mL) and the combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The crude product was purified via silica gel chromatography and eluted with ethyl acetate/petroleum ether (PE/EA = 100: 1 to 3 : 1) to afford ffert-butyl 8-[4-(2-[[(benzyloxy)carbonyl]amino]ethyl)-3-fluorophenyl]-3,8- diazabicyclo[3.2.1]octane-3-carboxylate as light yellow oil (220 mg, 32%). LCMS (ESI, m/'z): 484[M+H]+ |
15% | With palladium diacetate; caesium carbonate; ruphos; In toluene; at 100℃; for 17h; | (1270) [00418] Into a 100-mL round-bottom flask was placed benzyl (4-bromo-2- fluorophenethyl)carbamate (0.825 g, 2.34 mmol), tert-butyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (0.500 g, 2,36 mmol), Pd(OAc (0.050 g, 0.22 mmol), RuPhos (0.050 g), CsiCC (2.23 g, 6.84 mmol), and toluene (10 mL). The resulting solution was stirred for 17 h at 1.00 C in an oil bath and then concentrated in vacuo to afford the crude product. To the crude product was added DCM (50-mL) and then the inorganic solids were removed by filtration. The filtrate was concentrated in vacuo to afford the crude product that was purified by FCC eluting with petroleum ether : ethyl acetate (1 : 1) to afford tert-butyl 3-(4~(2-(((benzyloxyjcarbonyl)amino) ethyl)-3-fluorophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate as a yellow oil (15%). LCMS (ESI, m/z): 484 [M+Fl , |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tris-(dibenzylideneacetone)dipalladium(0); 2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; sodium t-butanolate; In toluene; at 100℃; for 4h;Inert atmosphere; | (1019) (1020) intermediate 31-1 (1021) [00354] Into a 100-mL round-bottom flask that purged and maintained under an inert atmosphere of nitrogen was added 4-bromo-2-chloro-l-iodobenzene (1.20 g, 3.78 mmol), benzyl piperazine-l -carboxylate (0.924 g, 4, 19 mmol), NaOtBu (1.10 g, 1 1.4 mmol), XantPhos (0.695 g, 1.20 mmol), Pd2(dba)3 (0.393 g, 0.430 mmol), and toluene (10 mL). The reaction mixture was stirred for 4 h at 60 C and then concentrated in vacuo to provide a crude product that was purified by FCC eluting with ethyl acetate/petroleum ether (1 : 10) to afford benzyl 4-(4-bromo-2- chlorophenyl)piperazine-l -carboxylate as a colorless oil (713 mg, 46%). LCMS (ESI, m/z) 409, 41 1 [ M 1 [ j .The Intermediates in Table 1 below were synthesized according to the procedures (palladium caialyzed C-N coupling) outlined above for Example 31-1, Intermediate 31-1, using the appropriate synthetic precursors. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | With potassium carbonate; In N,N-dimethyl-formamide; at 100℃; for 3h; | (1441) [00460] Into a 100-mL round-bottom flask was added <strong>[84194-36-5]2-chloro-4-fluorobenzaldehyde</strong> (0.743 g, 4.69 rnmol), tert-h tyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1 .00 g, 4.71 mmoi), potassium carbonate (1.30 g, 9.41 mmol), and DMF (15 mL). The reaction mixture was stirred for 3 h at 100 °C and then cooled to RT and quenched with water (50 mL). The resulting solution was extracted with ethyl acetate (3 x 20 mL) and the combined organic layers were dried over anhydrous sodium sulfate. The solids were removed by filtration over Celite and the filtrate was concentrated in vacuo. The resulting crude product was purified by FCC eluting with ethyl acetate/petroleum ether (1 :3) to afford fe/ -butyl 3-(3-chloro-4-formylphenyl)-3,8- (1442) 190 (1443) 144628010 vl diazabicyclo[3.2.1 ]octane-8-carboxyiate as a white solid (640 rag, 39percent). LCMS (ESI, m/z): 351 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With N-ethyl-N,N-diisopropylamine; HATU; In 1-methyl-pyrrolidin-2-one; at 20℃; | To a stirred solution of 500 mg (2.36 mmol) tert-butyl 3,8-diazabicyclo[3.2.1 ]octane-8- carboxylate in 12 mL NMP were added 532 mg 1 H-1 ,2,3-triazole-4-carboxylic acid (4.71 mmol, 2 eq), 1 .23 mL DIPEA (7.07 mmol, 3 eq) and 1 .791 g HATU (4.71 mmol, 2 eq). After stirring overnight at RT, the solution was subjected to preparative HPLC to yield 378 mg (52 %) tert-butyl 3-(1 H-1 ,2,3-triazol-4-ylcarbonyl)-3,8-diazabicyclo[3.2.1 ]octane- 8-carboxylate. (0433) LC-MS (Method 3): Rt = 0.91 min; MS (ESIpos): m/z = 308 [M+H]+ (0434) 1 H-NMR (500 MHz, DMSO-d6) delta [ppm]: 1.43 (9H), 1 .53 - 1 .72 (2H), 1 .83 (2H), 2.92 (1 H), 3.33 (1 H), 4.14 (1 H), 4.21 (1 H), 4.30 (1 H), 4.40 (1 H), 8.29 (1 H), 15.22 (1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 60℃; for 1h; | To a mixture of 7-benzyl-2,4-dichloro-6,8- dihydro-5H-pyrido[3,4-d]pyrimidine (920 mg, 3.13 mmol, 1.00 eq) and tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (677 mg, 3.19 mmol, 1.02 eq) in DMSO (18.0 mL) was added DIEA (1.21 g, 9.39 mmol, 1.64 mL, 3.00 eq). The reaction mixture was stirred at 60 C for 1 hour. The mixture was diluted with extracted with EtOAc (3 x 20 mL), washed with water (10 mL), IN HC1 (5 mL), NaHCCb (15 mL), and brine (15 mL). The combined organic layers were dried over Na2S04, filtered and concentrated under vacuum to give tert-butyl 3-(7- benzyl-2-chloro-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.30 g, 2.41 mmol, 76.9 % yield, 87.0 % purity) as a brown oil which was used directly in the next step without further purification. ESI MS m/z 470.2 [M+H]+. | |
With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 60℃; for 1h; | To a mixture of 7-benzyl-2,4-dichloro-6,8-dihydro-5H-pyrido[3,4-d]pyrimidine (920 mg, 3.13 mmol, 1.00 eq) and <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (677 mg, 3.19 mmol, 1.02 eq) in DMSO (18.0 mL) was added DIEA (1.21 g, 9.39 mmol, 1.64 mL, 3.00 eq). The reaction mixture was stirred at 60° C. for 1 hour. The mixture was diluted with extracted with EtOAc (3 20 mL), washed with water (10 mL), 1N HCl (5 mL), NaHCO 3 (15 mL), and brine (15 mL). The combined organic layers were dried over Na 2SO 4, filtered and concentrated under vacuum to give tert-butyl 3-(7-benzyl-2-chloro-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-4-yl)-3,8-diaz- abicyclo[3.2.1]octane-8-carboxylate (1.30 g, 2.41 mmol, 76.9% yield, 87.0% purity) as a brown oil which was used directly in the next step without further purification. ESI MS m/z 470.2 [M+H] +. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With N-ethyl-N,N-diisopropylamine; In acetonitrile; at 110℃; for 1h; | A 2OmL microwave reaction vessel is charged with methyl 4-[2-[4-[[2-[[3-(chioromethy l)benzoyi]aminoj-4, 5,6,7-tetrahydrobenzothiophene-3 -carbonyijarninoj-2,6- difiuoro-phenyl]ethyijhenzoate (1 .80 g, 2.89 mmol) and a solution of tert-butyl 3,8- diazabicyclo [3.2.1]octane-8-carboxyiate (760 mg, 3.47 mmoi) and DIPEA (1.01 mL, 5.78 mmol) in ACN (12 mL). The resulting yellow suspension is heated in a BIOTAGE Initiatormicrowave synthesizer at 110 C for 1 hr. The reaction mixture is concentrated in vacuo and the residue is partitioned between 5% aqueous NaHCO3 (150 mL) and DCM (50 ml.). The organic layer is separated, the aqueous layer is extracted with DCM (2 x 50 mL). The combined organic layers are washed with saturated aqueous NaC1 (50 mL), dried over anhydrous Na2SO4. filtered, and concentrated to dryness under reduced pressure. Theresulting residue is purified by chromatography over silica, eluting with a gradient of 15-45% of EtOAc in hexanes to afford the title compound as a light yellow solid (223 g, 97% yield) after solvent evaporation. ?HMvR (400.1 MHz, DMSO-d6): oe 1.38 (s, 9H), 1.95-1.60 (m, 8H), 2.16 (d, J= 10.0 Hz, 2H), 2.57 (d, J= 10.0 Hz, 1H), 2.70 (br s, 4H), 2.92 (s, 4H), 3.51 (s, 2H), 3.84 (s, 3H), 4.08-3.96 (m, 2H), 7.35-7.26 (in, 2H). 7.45-7.35 (m, 2H), 758-745 (m,2H), 7.79-7.72 (m, IH), 7.92-7.79 (m, 3H), 10.00 (s, IH), 11.41 (s, III),. LC-ES/MS (m/z)799 [Mi] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With sodium tris(acetoxy)borohydride; In 1,2-dichloro-ethane; at 20℃; for 48h; | A solution of tert-butyl 3 ,8-diazabicyclo[3 .2.1 ]octane-8-carboxylate (1.0 g, 4.71 mmol) in DCE (23.6 mL) was treated sequentially with 6- methoxynicotinaldehyde (711 mg, 5.18 mmol) and NaBH(AcO)3 (1.50 g, 7.07 mmol). The mixture was stirred for 1 day at ambient temperature, then additional 6-methoxynicotinaldehyde (711 mg, 5.18 mmol) and NaBH(AcO)3 (1.50 g, 7.07 mmol) were added. After stirring for 1 day at ambient temperature, the resulting mixture was concentrated in vacuo. The residue was purified by silica chromatography (0-100% EtOAc/ Hexanes as the gradient eluent to afford the title compound in sufficient purity for subsequent use (1.50 g, 96% yield). MS (apci) m/z = 334.2(M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43.5% | With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 110℃; for 16h;Inert atmosphere; | A solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (106 mg, 0.5 mmol), 2-iodobenzonitrile (229 mg, 1 mmol), CS2CO3 (326 mg, 1 mmol), XantPhos (23 mg, 0.04mmol), Pd2(dba)3 (18.3 mg, 0.02 mmol) in dioxane (10 mL) was stirred under N2 at 110C for 16 hrs. The reaction mixture was concentrated and purified by chromatography (silica, EtOAc/PE = 1/5) to afford tert-butyl-3-(2-cyanophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (68 mg, 0.217 mmol, 43.5%) as a yellow oil. ESI-MS (EI+, m/z): 314.2 [M+H]+. |
43.5% | With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 110℃; for 16h;Inert atmosphere; | Step 2: tert-Butyl 3-(2-cyanophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate A solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (106 mg, 0.5 mmol), 2-iodobenzonitrile (229 mg, 1 mmol), Cs2CO3 (326 mg, 1 mmol), XantPhos (23 mg, 0.04 mmol), Pd2(dba)3 (18.3 mg, 0.02 mmol) in dioxane (10 mL) was stirred under N2 at 110 C. for 16 hrs. The reaction mixture was concentrated and purified by chromatography (silica, EtOAc/PE=1/5) to afford tert-butyl-3-(2-cyanophenyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (68 mg, 0.217 mmol, 43.5%) as a yellow oil. ESI-MS (EI+, m/z): 314.2 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
18% | With potassium carbonate; In dimethyl sulfoxide; at 100℃; for 16h; | The mixture of 2,4,5-trifluorobenzonitrile (300 mg, 1.91 mmol), tert-butyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (486 mg, 2.92 mmol) and K2C03 (396 mg, 2.86 mmol) in DMSO (20 mL) was stirred at 100 C for 16 h. The mixture was purified by chromatography (silica, PE/EtOAc = 3/1) to afford tert-butyl-3 -(2-cyano-4, 5 -difluorophenyl)-3 , 8- diazabicyclo[3.2.1]octane-8-carboxylate (120 mg, 0.343 mmol, 18 %) as yellow solid. ESI-MS (Erb, m/z): 350.2 [M+H]t |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
200 mg | To a solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (200 mg, 942.1 umol) and paraformaldehyde (254 mg, 2.8 mmol) in methanol (2 mL) was added AcOH (2 mg, 47. lumol, 2.7 uL) (pH = 5). The mixture was stirred at 45C for 2 h. Then NaBH3CN (296 mg, 4.7 mmol) was added and stirred at 45C for 12 h. The mixture was concentrated, diluted with NaHC03 (5 mL) and extracted with dichloromethane (5 mL x 3). The combined organic layers were washed with brine (5 mL chi 2), dried over Na2S04, filtered and concentrated. The residue was purified by prep-TLC (Si02) to afford compound 19-2 (200 mg). 1H NMR (CDC13, 400MHz): delta 4.28 - 4.00 (m, 2H), 2.63 (dd, J= 2.2, 10.5 Hz, 2H), 2.23 (s, 5H), 1.94 - 1.76 (m, 4H), 1.47 (s, 9H). | |
With sodium tris(acetoxy)borohydride; In tetrahydrofuran; methanol; water;Inert atmosphere; | General procedure: A general route to obtain compounds 16a and 16b follows the synthesis illustrated below. The preparation of each compound is also provided. Scheme 14: General synthetic scheme for compounds 16a and 16b. The Boc-protected bicyclic piperazine (14a-b; 250 mg, 1 .18 mmol, 1.0 eq) was dissolved in a mixture of THF/MeOH (1 :1 ). Formaldehyde (37% in H20, 287 pL, 3.53 mmol, 3.0 eq) was added, followed by addition of Na(OAc)sBH (274.5 mg, 1.30 mmol, 1 .1 eq), and the reaction mixture was stirred overnight. The solvent was evaporated and the crude product purified by column chromatography on silica (0 - 20% MeOH in DCM). The product was visualized on the TLC plate using a KMn04 stain. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium carbonate; In 1-methyl-pyrrolidin-2-one; at 85℃; | General procedure: A solution of tert-butyl 3-oxa-7,9-diazabicyclo [3.3.1 jnonane-9-carboxylate(1 g, 4.38 mmol) 2-fluoro-5-iodopyridine (1.12 g, 5.04 mmol), and sodium carbonate (0.84 g,7.88 mmol) in 1-Methyl-2-pyrrolidinone (4 ml) was heated at 85 C overnight. The mixture wascooled to room temperature, diluted with water and extracted into DCM. The organic extract was dried over Na2SO4 filtered and concentrated under reduced pressure. The residue waspurified by silica chromatography to yield Sia (1.57 g, 62.3%). MS (ESI) mlz 431.9 [M+Hj . 1HNMR (400 MHz, Chloroform-d) oe 8.30 (dd, J = 2.4, 0.7 Hz, 1H), 7.66 (dd, J = 9.0, 2.3 Hz, 1H), 6.44 (d, J = 9.0 Hz, 1H), 4.25 (d, J = 12.7 Hz, 1H), 4.21 - 4.00 (m, 3H), 3.97 - 3.86 (m,2H), 3.80 (t, J= 11.9 Hz, 2H), 3.26 (t, J= 15.1 Hz, 2H), 1.48 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81.2% | With sodium tris(acetoxy)borohydride; acetic acid; In 1,2-dichloro-ethane; at 6℃; for 14h; | Step 1: Preparation of tert-Butyl 3-(5-(5-(thiophen-2-yl)isoxazole-3-carboxamido)pentyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate NaBH(OAc)3 (342.67 mg, 1.62 mmol, 1.5 eq) was added to a stirred solution of Intermediate B (300 mg, 1.08 mmol, 1.0 eq), <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (343.2 mg, 1.62 mmol, 1.5 eq) and HOAc (64.73 mg, 1.08 mmol, 1.0 eq) in 1,2-dichloroethane (12 mL) at 6 C. Then the mixture was stirred at 6 C. for 14 hours. The mixture was basified with saturated NaHCO3 aqueous solution to pH 8. The water phase was extracted with CH2Cl2 (3*3 mL). The combined organic layers were dried over anhydrous sodium sulfate and concentrated under reduced pressure. The residue was purified by silica gel chromatography eluting with petroleum ether/EtOAc from 20/1 to 1/1 to afford the title compound (450 mg, 81.2% yield) as a colorless oil. MS (ESI) m/z 475.2 [M+H]+. 1H NMR (400 MHz, CDCl3) delta ppm 7.56 (d, J=3.2 Hz, 1H), 7.52 (d, J=4.8 Hz, 1H), 7.18-7.16 (m, 1H), 6.84 (s, 1H), 4.19-4.10 (m, 2H), 3.50-3.45 (m, 2H), 2.64-2.62 (m, 2H), 2.33-2.29 (m, 2H), 2.25-2.18 (m, 2H), 1.85-1.82 (m, 4H), 1.65-1.61 (m, 4H), 1.48 (s, 9H), 1.44-1.42 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 90℃; for 5h;Inert atmosphere; | General procedure: will1-fluoro-2-nitro-4-(trifluoromethyl)benzene (2.0 g, 9.56 mmol),<strong>[149771-44-8]3,8-diazabicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (2.03 g, 9.56 mmol),Diisopropylethylamine (2.5 ml, 14.3 mmol) was added to 100 mL in sequenceIn a single-mouth bottle,Dissolved with N,N-dimethylformamide (20 mL),The temperature was gradually raised to 90 C under a nitrogen atmosphere for 15 hours.The reaction solution is cooled to room temperature and poured into tap water.Extracted with dichloromethane (60 mL×3),The organic phase is followed by tap water,Saturated brine and washed with anhydrous sodium sulfate.Filtered and evaporated to dryness to give a crude product.Column chromatography (petroleum ether / ethyl acetate (v / v)=20/1-10/1) purification,The title compound was obtained as a yellow liquid(3.56g, 93%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 90℃; for 5h;Inert atmosphere; | will1-fluoro-2-nitro-4-(trifluoromethyl)benzene (2.0 g, 9.56 mmol),3,8-diazabicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester (2.03 g, 9.56 mmol),Diisopropylethylamine (2.5 ml, 14.3 mmol) was added to 100 mL in sequenceIn a single-mouth bottle,Dissolved with N,N-dimethylformamide (20 mL),The temperature was gradually raised to 90 ° C under a nitrogen atmosphere for 15 hours.The reaction solution is cooled to room temperature and poured into tap water.Extracted with dichloromethane (60 mL×3),The organic phase is followed by tap water,Saturated brine and washed with anhydrous sodium sulfate.Filtered and evaporated to dryness to give a crude product.Column chromatography (petroleum ether / ethyl acetate (v / v)=20/1-10/1) purification,The title compound was obtained as a yellow liquid(3.56g, 93percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With triethylamine; In acetonitrile; at 50℃; for 5h;Inert atmosphere; | <strong>[149771-44-8]3,8-diazabicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (0.5 g, 2.4 mmol),Benzyl bromide (0.31 mL, 2.6 mmol) and triethylamine (0.5 ml, 3.6 mmol) were sequentially added to a 100 mL single-mouth bottle.Dissolved in acetonitrile (20 mL),The temperature was gradually raised to 50 C for 5 hours under nitrogen protection.The reaction solution was cooled to room temperature and poured into tap water.Ethyl acetate extraction (60 mL × 3), and the organic phase was reused with tap water.The mixture was washed with brine and dried over anhydrous sodium sulfate.Filtered and evaporated to dryness to give a crude product.Purified by column chromatography (petroleum ether / ethyl acetate (v / v) = 40/1-20/1)The title compound was obtained as a white solid(0.68g, 90%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 90℃; for 15h;Inert atmosphere; | will1-fluoro-2-nitro-4-(trifluoromethyl)benzene (2.0 g, 9.56 mmol),<strong>[149771-44-8]3,8-diazabicyclo[3.2.1]octane-8-carboxylic acid tert-butyl ester</strong> (2.03 g, 9.56 mmol),Diisopropylethylamine (2.5 ml, 14.3 mmol) was added to 100 mL in sequenceIn a single-mouth bottle,Dissolved with N,N-dimethylformamide (20 mL),The temperature was gradually raised to 90 C under a nitrogen atmosphere for 15 hours.The reaction solution is cooled to room temperature and poured into tap water.Extracted with dichloromethane (60 mL×3),The organic phase is followed by tap water,Saturated brine and washed with anhydrous sodium sulfate.Filtered and evaporated to dryness to give a crude product.Column chromatography (petroleum ether / ethyl acetate (v / v)=20/1-10/1) purification,The title compound was obtained as a yellow liquid(3.56g, 93%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62.8% | At room temperature, to the containing 5-chloro-2-methyl-3-nitrobenzaldehyde (5 g, 25 mmol) <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (5.8 g, 27.5 mmol) in anhydrous dichloromethane (100 ml) solution, dropping glacial acetic acid (1.5 g, 25 mmol), after the completion of the dropping, stirring at room temperature the reaction 1 hour, then, 0 C in batches under fed into three-acetoxy borohydride (10.6 g, 50 mmol), after finishing the adding, temperature to room temperature naturally reaction 10 hours, after the reaction, slowly dripping methanol solution (20 ml), the majority of the solvent is removed under reduced pressure, the residue through silica gel column chromatography (petroleum ether: ethyl acetate 5:1 - 1:1) to obtain the white solid 6.2 g, yield 62.8%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 100℃; for 2h; | A solution of <strong>[136516-64-8]2,4-difluoro-6-hydroxybenzaldehyde</strong> (600 mg, 3.80 mmol), tert-butyl3,8-diazabicyclo[3.2.1]octane-8-carboxylate (800 mg, 3.75 mmol), and DIEA (700 mg, 5.42 mmol) in DMSO (10 mL) was stirred for 2 h at 100 C. After cooling to room temperature the reaction was quenched by the addition of water (10 mL). The resulting mixture was extracted with DCM (2 x 20 mL). The combined organic layers were dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum. Purification by silica gel chromatography (eluting with 1:4 EtOAc/pet. ether) afforded tert-butyl 3-(3-fluoro-4-formyl-5-hydroxyphenyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate as a yellow solid. MS: (ESI, m/z): 351 [M+H]t |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With methanesulfonato(2-dicyclohexylphosphino-2?,6?-bis(dimethylamino)-1,1?-biphenyl)(2?-amino-1,1?-biphenyl-2-yl)palladium(II); sodium t-butanolate; In 1,4-dioxane; at 80℃; for 18h;Inert atmosphere; | To 5-bromo-2-(2,5-dimethyl-pyrrol-1 -yl)-4-methoxy-pyridine (1 .00 g, 3.56 mmol) and 3,8- diaza-bicyclo[3.2.1 ]octane-8-carboxylic acid ie f-butyl ester (830 mg, 3.91 mmol) in 1 ,4- dioxane (13 mL) is added sodium fe/t-butoxide (3.48 g, 10.7 mmol) and CPhos-G3- palladacycle methane sulfonate (287 mg, 0.36 mmol). The mixture is degassed with nitrogen for 5 min, and stirred for 18h at 80C. The reaction mixture is extracted with EtOAc, washed with brine, dried over MgS04, filtered and concentrated under reduced pressure. The residue is purified by silica gel column chromatography to give the title compound. (0512) Yield: 760 mg (52%) ESI-MS: m/z = 412 (M+H)+ Rt(HPLC): 1.23 min (Method 1 ) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With N-ethyl-N,N-diisopropylamine; In dimethyl sulfoxide; at 130℃; for 3h; | Into a 100-mL round-bottom flask, was placed a solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (2.0 g, 9.42 mmol, 1.00 equiv) in dimethyl sulfoxide (40 mL), N,N-diisopropylethylamine (714.0 mg, 5.52 mmol, 4.00 equiv), 4-bromo-6-chloropyridazin-3-amine (3.0 g, 14.39 mmol, 1.50 equiv). The resulting solution was stirred for 3 hours at 130 C. in an oil bath. The reaction was then quenched by the addition of water (90 mL). The resulting solution was extracted with ethyl acetate (80 mL*3) and the organic layers combined. The resulting mixture was washed with brine (100 mL*1). The mixture was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was applied onto a silica gel column with dichloromethane/methanol (10/1). The collected fractions were combined and concentrated under vacuum. This resulted in 1.7 g (53%) of tert-butyl 3-(3-amino-6-chloropyridazin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With triethylamine; In dichloromethane; at 20℃; | To a solution of <strong>[149771-44-8]tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate</strong> (10 g, 47.11 mmol, 1 eq) in dichloromethane (140 mL) was added CbzCl (9.64 g, 56.53 mmol, 8.04 mL, 1.2 eq) and triethylamine (8.58 g, 84.79 mmol, 11.80 mL, 1.8 eq). The mixture was stirred at 20 C. for 20 hours. TLC (dichloromethane:methanol=10:1) showed reactant 1 was not consumed completely, so CbzCl (1.61 g, 9.42 mmol, 1.34 mL, 0.2 eq) was added again. The reaction mixture was stirred at 20 C. for 2 hours. The reaction mixture was washed with water (80 mL) two times, the organic layer was dried over anhydrous sodium sulfate, and concentrated to afford the crude product. The crude product was purified by silica gel chromatography (petroleum ether:ethyl acetate=1:0 to 4:1). Compound 8-benzyl 3-(tert-butyl) 3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (11.48 g, 33.14 mmol, 70% yield) was obtained as colorless oil. |
Tags: 149771-44-8 synthesis path| 149771-44-8 SDS| 149771-44-8 COA| 149771-44-8 purity| 149771-44-8 application| 149771-44-8 NMR| 149771-44-8 COA| 149771-44-8 structure
A524406[ 1403676-97-0 ]
tert-Butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate hydrochloride
Reason: Free-salt
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Precautionary Statements-General | |
Code | Phrase |
P101 | If medical advice is needed,have product container or label at hand. |
P102 | Keep out of reach of children. |
P103 | Read label before use |
Prevention | |
Code | Phrase |
P201 | Obtain special instructions before use. |
P202 | Do not handle until all safety precautions have been read and understood. |
P210 | Keep away from heat/sparks/open flames/hot surfaces. - No smoking. |
P211 | Do not spray on an open flame or other ignition source. |
P220 | Keep/Store away from clothing/combustible materials. |
P221 | Take any precaution to avoid mixing with combustibles |
P222 | Do not allow contact with air. |
P223 | Keep away from any possible contact with water, because of violent reaction and possible flash fire. |
P230 | Keep wetted |
P231 | Handle under inert gas. |
P232 | Protect from moisture. |
P233 | Keep container tightly closed. |
P234 | Keep only in original container. |
P235 | Keep cool |
P240 | Ground/bond container and receiving equipment. |
P241 | Use explosion-proof electrical/ventilating/lighting/equipment. |
P242 | Use only non-sparking tools. |
P243 | Take precautionary measures against static discharge. |
P244 | Keep reduction valves free from grease and oil. |
P250 | Do not subject to grinding/shock/friction. |
P251 | Pressurized container: Do not pierce or burn, even after use. |
P260 | Do not breathe dust/fume/gas/mist/vapours/spray. |
P261 | Avoid breathing dust/fume/gas/mist/vapours/spray. |
P262 | Do not get in eyes, on skin, or on clothing. |
P263 | Avoid contact during pregnancy/while nursing. |
P264 | Wash hands thoroughly after handling. |
P265 | Wash skin thouroughly after handling. |
P270 | Do not eat, drink or smoke when using this product. |
P271 | Use only outdoors or in a well-ventilated area. |
P272 | Contaminated work clothing should not be allowed out of the workplace. |
P273 | Avoid release to the environment. |
P280 | Wear protective gloves/protective clothing/eye protection/face protection. |
P281 | Use personal protective equipment as required. |
P282 | Wear cold insulating gloves/face shield/eye protection. |
P283 | Wear fire/flame resistant/retardant clothing. |
P284 | Wear respiratory protection. |
P285 | In case of inadequate ventilation wear respiratory protection. |
P231 + P232 | Handle under inert gas. Protect from moisture. |
P235 + P410 | Keep cool. Protect from sunlight. |
Response | |
Code | Phrase |
P301 | IF SWALLOWED: |
P304 | IF INHALED: |
P305 | IF IN EYES: |
P306 | IF ON CLOTHING: |
P307 | IF exposed: |
P308 | IF exposed or concerned: |
P309 | IF exposed or if you feel unwell: |
P310 | Immediately call a POISON CENTER or doctor/physician. |
P311 | Call a POISON CENTER or doctor/physician. |
P312 | Call a POISON CENTER or doctor/physician if you feel unwell. |
P313 | Get medical advice/attention. |
P314 | Get medical advice/attention if you feel unwell. |
P315 | Get immediate medical advice/attention. |
P320 | |
P302 + P352 | IF ON SKIN: wash with plenty of soap and water. |
P321 | |
P322 | |
P330 | Rinse mouth. |
P331 | Do NOT induce vomiting. |
P332 | IF SKIN irritation occurs: |
P333 | If skin irritation or rash occurs: |
P334 | Immerse in cool water/wrap n wet bandages. |
P335 | Brush off loose particles from skin. |
P336 | Thaw frosted parts with lukewarm water. Do not rub affected area. |
P337 | If eye irritation persists: |
P338 | Remove contact lenses, if present and easy to do. Continue rinsing. |
P340 | Remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P341 | If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P342 | If experiencing respiratory symptoms: |
P350 | Gently wash with plenty of soap and water. |
P351 | Rinse cautiously with water for several minutes. |
P352 | Wash with plenty of soap and water. |
P353 | Rinse skin with water/shower. |
P360 | Rinse immediately contaminated clothing and skin with plenty of water before removing clothes. |
P361 | Remove/Take off immediately all contaminated clothing. |
P362 | Take off contaminated clothing and wash before reuse. |
P363 | Wash contaminated clothing before reuse. |
P370 | In case of fire: |
P371 | In case of major fire and large quantities: |
P372 | Explosion risk in case of fire. |
P373 | DO NOT fight fire when fire reaches explosives. |
P374 | Fight fire with normal precautions from a reasonable distance. |
P376 | Stop leak if safe to do so. Oxidising gases (section 2.4) 1 |
P377 | Leaking gas fire: Do not extinguish, unless leak can be stopped safely. |
P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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