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CAS No. : | 17380-18-6 | MDL No. : | MFCD01719101 |
Formula : | C10H6N2O | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | NVBCFOQYDFKXJJ-UHFFFAOYSA-N |
M.W : | 170.17 | Pubchem ID : | 28504 |
Synonyms : |
|
Num. heavy atoms : | 13 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 48.4 |
TPSA : | 56.65 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.46 cm/s |
Log Po/w (iLOGP) : | 1.15 |
Log Po/w (XLOGP3) : | 1.23 |
Log Po/w (WLOGP) : | 1.85 |
Log Po/w (MLOGP) : | 0.22 |
Log Po/w (SILICOS-IT) : | 2.62 |
Consensus Log Po/w : | 1.42 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.12 |
Solubility : | 1.3 mg/ml ; 0.00765 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.02 |
Solubility : | 1.64 mg/ml ; 0.00961 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -3.31 |
Solubility : | 0.083 mg/ml ; 0.000488 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.48 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302+H312+H332-H315-H317-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With trichlorophosphate In <i>N</i>-methyl-acetamide; water | Preparation 35 3-Formyl-1 H -indole-5-carbonitrile Phosphoryl chloride (4.24ml, 45.48mmol) was added dropwise to dimethylformamide (3.52ml, 45.48mmol) and stirred for 30mins at room temperature. A solution of 1H-indole-5-carbonitrile (5.39g, 37.9mmol) in dimethylformamide (10ml) was added dropwise. A solid precipitated, further dimethylformamide (10ml) was added to aid stirring and the reaction mixture was then stirred at room temperature for 3hr. Water was added to quench the reaction mixture which was then stirred for 18hr. The stirring was stopped and the reaction mixture was left to stand, after 24hr a pink solid had precipitated in the organic layer. The layers were separated and organic layer filtered, washed with water and dried to give the desired product (5.44g, 84percent). 1H NMR (DMSO)δ 7.60-7.80 (m, 2H), 8.20-8.30 (m, 2H), 10.00 (s, 1H), 12.20-12.35 (s, br, 1H). |
75% | With sodium hydroxide; trichlorophosphate In <i>N</i>-methyl-acetamide | EXAMPLE 1 Trans-2-[5-Cyanoindol-3-yl]-1-(N,N-dimethylaminomethyl)cyclopropane Phosphorus oxychloride (10.9 ml, 117 mmol) was added dropwise over 30 min to anhydrous dimethylformamide (50 ml) that was maintained at 10-20° C. (internal temperature). The resulting mixture was stirred for 30 min and then chilled to 0° C. A solution of commercially available 5-cyanoindole (15 g, 106 mmol) in anhydrous dimethylformamide (30 ml) was added over 10 min. The ice bath was removed and the solution was allowed to warm to room temperature. After 2 h, a very thick paste resulted. The off-white paste was carefully quenched with ice chips. An aqueous solution of sodium hydroxide (2.12 g NaOH/100 ml H2O) was added. After a mild exotherm, a clear yellow solution resulted. The solution was poured into water (~400 ml) and a fine solid immediately precipitated. The mixture was filtered through a 600 ml glass fritted funnel of medium porosity. The yellow filtrate was diluted with an equal volume of water and left to stand for 16 h. A yellow precipitate was collected by vacuum filtration. The solid was dried overnight under vacuum to afford 13.6 g (75percent yield) of (5-cyanoindol-3-yl)carboxaldehyde: 1H NMR (500 MHz, DMSO-d6) 12.58 (1 H, br s,), 10.00 (1 H, s), 8.51 (1 H, d, J=3.1 Hz), 8.46 (1 H, d, J=0.6 Hz), 7.22 (1 H, dd, J=8.6, 0.5 Hz), 7.64 (1 H, dd, J=8.5, 1.6 Hz); MS m/e 171 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With water; iodine; oxygen; sodium carbonate In 1,4-dioxane at 100℃; for 36 h; Schlenk technique; Sealed tube | General procedure: Under air, a 20 mL of Schlenk tube equipped with a stir bar was charged with indole 1 (0.2 mmol, 1 equiv),TMEDA (75 µL, 0.5 mmol, 2.5 equiv), Na2CO3 (42.4 mg, 0.4mmol, 2.0 equiv), 1,4-dioxane (0.5 mL) and H2O (100 µL). Then I2 (101.5 mg, 0.4 mmol, 2.0 equiv) was added and the tube was sealed with a rubber plug and charged with O2. The reaction mixture was stirred at 100 °C for 36 h in oil bath. After cooling to room temperature, the resultant mixture was evaporated with EtOAc (20 mL) under reduced pressure and the residue was purified by flash column chromatography on a silica gel to give the products. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | at 0 - 26℃; for 3 h; | POCI3 (3.6 mL, 38.68 mmol) was added to DMF (l 6.5 mL) dropwise at 0 °C- 10 °C. The resulting mixture was stirred for 30 minutes, cooled to 0 °C, and a solution of Intermediate Z (5.0 g, 35.17 mmol) in DMF (10.0 mL) was added over15 minutes. After the addition was complete, the reaction mixture was stirred at ambient temperature for 2 hours. The reaction mixture was quenched with ice (25 g), poured into water (50 mL), and NaOH (1.5g) was added. The mixture was filtered, and the yellow colored filtrate was diluted with water (100 mL) and left to stand at room temperature for 20 hours. The solid was then filtered and dried to affordIntermediate AA (1.5 g, 62percent) as a yellow solid. 1H NMR (DMSO-c3/4: δ 12.59 (bs, 1H), 10.00 (s, 1H), 8.52 (s, 1 H), 8.51 (s, 1H), 7.71 (s, J = 8.29 Hz; 1H), 7.65 (d, J = 8.70 Hz; 1H). Mass (M-H): 169.1 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.379 g | With dmap In acetonitrile at 20℃; | General procedure: To a solution of an appropriate indole, azaindole or alternative heterocycles (1.0 eq) and di-ferf-butyl dicarbonate (1eq. to 2 eq., more in particular 1.2 eq) in acetonitrile was added DMAP (0.1 to 0.5 eq. more in particular 0.1 eq). The reaction mixture was stirred overnight at room temperature. The reaction mixture was concentrated under reduced pressure. The residue was dissolved in dichloromethane and washed with a saturated sodium bicarbonate solution. The phases were separated. The aqueous phase was extracted with dichloromethane. The organic phases were combined, washed with a saturated ammonium chloride solution, water and brine, dried over magnesium sulfate, filtered and concentrated under reduced pressure. The BOC-protected compound was used in the next step without further purification. |
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