Structure of 180609-56-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 180609-56-7 |
Formula : | C15H19NO4 |
M.W : | 277.32 |
SMILES Code : | O=C(C1N(C(OCC2=CC=CC=C2)=O)CCCC1)OC |
MDL No. : | MFCD11111587 |
InChI Key : | PKYPKDMELOKLKL-UHFFFAOYSA-N |
Pubchem ID : | 11011289 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 20 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.47 |
Num. rotatable bonds | 6 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 77.52 |
TPSA ? Topological Polar Surface Area: Calculated from |
55.84 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.09 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.42 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.82 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.83 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.8 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.19 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.91 |
Solubility | 0.341 mg/ml ; 0.00123 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.24 |
Solubility | 0.161 mg/ml ; 0.000582 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.06 |
Solubility | 0.242 mg/ml ; 0.000871 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.27 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.95 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With potassium hydrogencarbonate; In N,N-dimethyl-formamide; at 20℃; for 18h; | EXAMPLE 36; 2-(2-methylpiperidin-2-yl)-1H-benzimidazole-4-carboxamide; EXAMPLE 36A; 1-benzyl 2-methyl piperidine-1,2-dicarboxylate A solution of 1-[(benzyloxy)carbonyl]piperidine-2-carboxylic acid (5 g) and iodomethane (2.5 mL) in DMF (40 mL) was treated with potassium bicarbonate (3.8 g) and stirred at room temperature for 18 hrs. The reaction mixture was concentrated and the residual oil was partitioned between ethyl acetate and water. The organic phase was concentrated and the residue was purified by flash chromatography (silica gel, ethyl acetate/hexanes) to provide Example 36A (4.88 g, Yield: 93%). MS (DCI/NH3) m/z 278 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64.3% | To a 250 mL of three-neck flask was added dried acetonitrile (5.01 g, 122 mmol). To the flask was added anhydrous THF (187 mL) under nitrogen atmosphere. The flask was cooled to -78 C. To the flask was added n-butyl lithium (70.6 mL, 113 mmol) in batch. After adding, the mixture was stirred for 1 hr under this temperature. A solution of <strong>[180609-56-7]N-Cbz-piperidine-2-methylformate</strong> (24.1 g, 87 mmol) in anhydrous THF (70 mL) was further added in batch. The mixture reacted for further 45 min at -78C. The mixture was naturally warmed to room temperature and quenched with water. The mixture was rotary-evaporated to remove THF. 600 mL of water was added. The impurities were removed by extraction with 100 mL of ethyl ether. pH of the aqueous layer was adjusted with diluted hydrochloric acid to 7 to 8. The aqueous layer was extracted with dichloromethane. The combined organic phase was dried over anhydrous Na2SO4. The mother liquid was concentrated after being filtered in vacuo so as to give 16.0 g of the title compound. Yield: 64.3%. MS (ESI): m/z 287 (M+H)+ | |
64.3% | Example 11A 2-(2-cyanoacetyl)piperidine-1-benzyl formate To a 250 mL of three-neck flask was added dried acetonitrile (5.01 g, 122 mmol). To the flask was added anhydrous THF (187 mL) under nitrogen atmosphere. The flask was cooled to -78 C. To the flask was added n-butyl lithium (70.6 mL, 113 mmol) in batch. After adding, the mixture was stirred for 1 hr under this temperature. A solution of <strong>[180609-56-7]N-Cbz-piperidine-2-methylformate</strong> (24.1 g, 87 mmol) in anhydrous THF (70 mL) was further added in batch. The mixture reacted for further 45 min at -78 C. The mixture was naturally warmed to room temperature and quenched with water. The mixture was rotary-evaporated to remove THF. 600 mL of water was added. The impurities were removed by extraction with 100 mL of ethyl ether. pH of the aqueous layer was adjusted with diluted hydrochloric acid to 7 to 8. The aqueous layer was extracted with dichloromethane. The combined organic phase was dried over anhydrous Na2SO4. The mother liquid was concentrated after being filtered in vacuo so as to give 16.0 g of the title compound. Yield: 64.3%. MS (ESI): m/z 287 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | To a solution of Cbz-Pip-OMe (832 mg, 3 mmol) in dry THF (15 ml) at -78 C, a solution 1 M of LiHMDS in THF (4.5 ml, 4.5 mmol) was added and the mixture was stirred for 30 min. Then, the lithium enolate was added to a solution of PhSeCl (1.15 g, 6.0 mmol) in dry THF (15 ml) at -78 C. The reaction mixture was stirred for 24 h and reach slowly room temperature. The solvent was evaporated and the crude of the reaction was purify by flash chromatography using as eluent a mixture of ethyl acetate/hexane (3:7), affording 4 (562 mg, 2.04 mmol, 68 %). 1H NMR (CDCl3) delta 7.38-7.29 (m, 5H, Ar), 6.07 (t, J = 4.0 Hz, 1H, C=CH), 5.14 (s, 2H, CCbzH2), 3.67-3.64 (m, 2H, H), 3.55 (s, 3H, OCH3), 2.24 (dt, J = 6.6 and 3.9 Hz, 2H, H) and 1.86-1.80 (m, 2H, H) ppm; 13C NMR (CDCl3) delta 165.1 (COOMe), 135.8 (C), 132.4 (C, Ar), 128.5, 128.2 and 128.1 (CH, Ar), 123.1 (CH, C=C), 68.0 (CCbzH2), 51.9 (OCH3), 43.7 (Ce), 22.9 (Cg) and 22.7 (Cd) ppm; IR (neat) nu 1703, 1645, 1498, 1454, 1436 cm-1; HRMS (m/z): Calcd. for C15H17NO4[M+Na]+ 298.1049; Found 298.1059. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | To a solution of 9.41 g (1 eq.) l-(Benzyloxycarbonyl)-2-piperidinecarboxylic acid in 200 mL DCM 0.6 g HOBt (0.11 eq.) and 7.45 g (1.1 eq.) EDC hydrochloride were added and the mixture was stirred vigorously at ambient temperature for 1.5 h. To the solution was added 40 mL methanol. The mixture was stirred overnight, extracted with water, and the organic phase dried over magnesium sulfate. The dry solution was filtered and concentrated in vacuum. The resulting residue was purified by chromatography (ethyl acetate/nTieptane 1 : 1), yielding 6.6 g of the title compound as colorless oil (yield 61%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
47% | To a cooled solution (-78C) of 0.42 g (2.2 eq.) chloro-iodo-methane in 10 mL THF, 1.58 mL (2.2 eq.) of LDA 1.5 M solution in THF was added dropwise in a nitrogen atmosphere. The temperature was maintained below -72C. After stirring for additional 10 min at -78 C a solution of 0.3 g (1 eq.) of 1- benzyl 2-methyl 1,2-piperidinedicarboxylate in 3 mL THF was added dropwise. The internal temperature was maintained not higher than -72 C. After stirring for additional 5 min 1.08 mL (1.5 eq.) of LDA 1.5 M solution in THF was added dropwise. The internal temperature was maintained below - 72C. After stirring for further 30 min at -78C the reaction mixture was quenched with a solution of 1.2 g acetic acid in lOmL THF. The reaction mixture was allowed to warm to ambient temperature and 20 mL of water was added. The organic and aqueous phases were separated and the aqueous phase 3 times extracted with 25 mL of ethyl acetate. The combined organic washings were dried over magnesium sulphate, filtered, the solvents evaporated in vacuum and flashed chromatographed using heptane/dioxane 4: 1 mixture to give 0.15 g of the title product as almost colorless oil (Rf 0.12, yield 47%). |
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