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Rajapaksha, Ishanka N. ; Wang, Jing ; Leszczynski, Jerzy , et al. Molecules,2023,28(13):4929. DOI: 10.3390/molecules28134929 PubMed ID: 37446594
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Abstract: NIR dyes have become popular for many applications, including biosensing and imaging. For this reason, the mol. switch mechanism of the xanthene dyes makes them useful for in vivo detection and imaging of bioanalytes. Our group has been designing NIR xanthene-based dyes by the donor-acceptor-donor approach; however, the equilibrium between their opened and closed forms varies depending on the donors and spacer. We synthesized donor-acceptor-donor NIR xanthene-based dyes with an alkyne spacer via the Sonogashira coupling reaction to investigate the effects of the alkyne spacer and the donors on the maximum absorption wavelength and the mol. switching (ring opening) process of the dyes. We evaluated the strength and nature of the donors and the presence and absence of the alkyne spacer on the properties of the dyes. It was shown that the alkyne spacer extended the conjugation of the dyes, leading to absorption wavelengths of longer values compared with the dyes without the alkyne group. In addition, strong charge transfer donors shifted the absorption wavelength towards the NIR region, while donors with strong π-donation resulted in xanthene dyes with a smaller equilibrium constant DFT/TDDFT calculations corroborated the exptl. data in most of the cases. Dye 2 containing the N,N-dimethylaniline group gave contrary results and is being further investigated.
Keywords: donor-acceptor-donor ; NIR dyes ; xanthene dyes ; amine donors ; alkyne spacers
Purchased from AmBeed: 589-87-7 ; 768-60-5 ; 201802-67-7 ; 57102-42-8 ; 17573-94-3 ; 1066-54-2 ; 205877-26-5 ; 28611-39-4 ; 262861-81-4 ; 1195931-66-8
CAS No. : | 205877-26-5 | MDL No. : | MFCD09030769 |
Formula : | C20H15N | Boiling Point : | - |
Linear Structure Formula : | HCC(C6H4(N(C6H5)2)) | InChI Key : | QDYFCLVSLUZDHB-UHFFFAOYSA-N |
M.W : | 269.34 | Pubchem ID : | 20612855 |
Synonyms : |
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Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With tetrabutyl ammonium fluoride In tetrahydrofuran at 20℃; for 5 h; | 1.0 g (2.93 mmol) of Intermediate 6(1) was dissolved in 10.0 mL of THF, and 14.64 mL (14.64 mmol) of a 1.0 M tetrabutylammonium fluoride solution in THF was gradually added thereto at room temperature, and then the mixture was stirred at room temperature for 5 hours. After the reaction was terminated, 50 mL of distilled water was added thereto, and the resultant was subjected to extraction three times with 50 mL of methylene chloride to obtain an organic layer. The organic layer was collected and dried with magnesium sulfate to evaporate the solvent. The residue was separately purified using silica gel column chromatography to obtain 730 mg (2.78 mmol) of Intermediate 6(2) (Yield: 93percent). The produced compound was identified using LC-MS. [0137] C20H15N: M+270.12 |
93% | With tetrabutyl ammonium fluoride In tetrahydrofuran at 20℃; for 5 h; | B. Synthesis of Intermediate 6(2)[0129] 1.0 g (2.93 mmol) of Intermediate 6(1) was dissolved in 10.0 mL of THF, and 14.64 mL (14.64 mmol) of a 1.0M tetrabutylammonium fluoride solution in THF was gradually added thereto at room temperature, and then the mixturewas stirred at room temperature for 5 hours. After the reaction was terminated, 50 mL of distilled water was addedthereto, and the resultant was subjected to extraction three times with 50 mL of methylene chloride to obtain an organiclayer. The organic layer was collected and dried with magnesium sulfate to evaporate the solvent. The residue wasseparately purified using silica gel column chromatography to obtain 730 mg (2.78 mmol) of Intermediate 6(2) (Yield:93 percent). The produced compound was identified using LC-MS.C20H15N : M+ 270.12 |
93% | With potassium carbonate In methanol; dichloromethane at 20℃; for 3 h; Inert atmosphere | To a mixture of 4-bromotriphenylamine (0.401 g, 1.24 mmol), PdCl2(PPh3)2 (42.1 mg, 0.06 mmol) and CuI (9.5 mg, 0.05 mmol) was dissolved in toluene (10 mL) by stirring with a magnetic bar in a sealed tube. 1,8-Diazabicycloundec-7-ene (DBU 2.0 mL) was added, followed by trimethylsilyl acetylene (1.6 mL, 1.5 g, 15 mmol) under N2 atmosphere. The reaction mixture was stirred at 70 °C. After 3 h, the reaction mixture was then filtered and the solid was washed with EtOAc (3 x 15 mL) and the filtrate was evaporated under reduced pressure. The residue was dissolved in a minimal amount of dichloromethane and eluted through a silica gel column with hexane to afford the desired product after solvent removal as light yellow oil (0.398 g, 94percent yield); δH (400 MHz, CDCl3) 7.32-7.24 (6H, m, Ph), 7.09-7.05 (6H, m, Ph), 6.95 (2H, d, J 8.0 Hz, Ph), 0.24 (9H, s, Si-Me). Next, the TMS protect compound (0.395 g,1.16 mmol) and K2CO3 (2.013 g) were dissolved in dichloromethane(15 mL) and methanol (15 mL) under N2 gas by stirring with a magnetic bar in a round-bottom flask at room temperature for 3 h. Then, the reaction was filtered and the solid was washed with dichloromethane (15 mL) and the filtrate was evaporated under reduced pressure. The residue was dissolved in a minimal amount of dichloromethane and eluted through a silica gel column with gradient solvents starting from pure hexane to hexane/dichloromethane (4/1) to afford the desired product after solvent removal (0.290 mg, 93percent yield) as a brown solid, m.p. 112-113 C; δH (400 MHz, CDCl3) 7.33 (2H, d, J 8.0 Hz, Ph), 7.26-7.29 (4H, m,Ph), 7.11-7.04 (6H, m, Ph), 6.96 (2H, d, J 8.0 Hz, Ph), 3.02 (1H, s, Csp-H). |
91% | With tetrabutyl-ammonium chloride In tetrahydrofuran for 0.5 h; | 8 g of Intermediate 1-a was dissolved in 100 ml of THF,And 60 ml of tetrabutylammonium chloride in THF was added dropwise thereto(1.0 M) solution and stirred for about 30 minutes.100 ml of water was added to the reaction solution, and the resultant was extracted three times with 100 ml of ether each time. The organic layer was collected and dried over magnesium sulfate and the solvent was evaporated. The residue was separated and purified by silica gel column chromatography to obtain 5.6 g (91percent yield) of Intermediate 1-b. |
86% | With potassium carbonate In methanol at 20℃; for 3 h; | General procedure: 9-[4-{2-(Trimethylsilyl)ethynyl}phenyl]carbazole (4a, 0.68g, 2.7mmol), potassium carbonate (0.42g, 3.0mmol), and methanol (4.0mL) were placed in a flask, and the suspension was stirred at room temperature. After stirring for 3h, the precipitate that was insoluble in the solvent was separated by atmospheric filtration, and the filtrate was poured into saturated aqueous NH4Cl solution (20mL). The crude product was extracted with AcOEt (20mL) three times and the combined organic layer was washed with brine (once). The organic layer was collected and dried over anhydrous Na2SO4, which was separated by filtration. The filtrate was evaporated in vacuo and subjected to silica-gel column chromatography (eluent: hexane/CH2Cl2=5/1) to obtain the deprotection product 5a in 99percent yield (0.53g, 2.0mmol) as a white solid. |
78% | With methanol; potassium hydroxide In tetrahydrofuran at 20℃; for 1 h; | A solution of KOH / MeOH (0.164 g / 2 ml) was added to a THF solution prepared by dissolving N, N-diphenyl-4 - [(trimethylsilyl) ethynyl] aniline (1 g, 2.94 mmol) The mixture was slowly added using a dropping funnel and stirred at room temperature for 1 hour. The solvent was concentrated under reduced pressure to obtain a black solid product, N, N-diphenyl-4-ethynylaniline (0.65 g, yield: 78percent). |
0.5 g | With methanol; sodium hydroxide In tetrahydrofuran at 25℃; for 2 h; | A 100 mL three-necked round bottomed flask, equipped with a magnetic stir bar and condenser, was charged with ligand (4-bromophenyl)diphenylamine (leftmost compound of the above scheme) (1 g, 3.08mmol), trimethylsilylacetylene (0.6mL, 4.62mmol), bis(triphenylphosphine) palladium dichloride (0.1 1 g, 0.3mmol), copper iodide (0.03g, 0.15mmol) and 40 mL of degassed THF/triethylamine (v:v= 3: 1 ). The mixture was stirred at 80°C for 20 hours, and then concentrated under reduced pressure. The product was dissolved in dichloromethane solvent. The hydrophobic solvent solution was then sequentially washed with saturated ammonium chloride solution, brine and water. The combined hydrophobic phase was dried over MgS04 and filtered through a filter paper. The product was then purified using flash chromatography through silica using 4percent ethyl acetate in hexane as eluent. After removal of eluent solvent under reduced pressure, the resulting white solid was dissolved in 10 mL of tetrahydrofuran solvent and treated with sodium hydroxide in methanol (20 mL of a 2.0 M solution). After stirring for 2 hour, the resulting mixture was concentrated under reduced pressure. After extraction with dichloromethane, the hydrophobic solution was dried over MgS04, filtered and the solvent was removed under reduced pressure to give the product (4-ethynylphenyl)diphenylamine ("Ph2NPhCCH") (middle compound of Scheme for Example 2) as a white solid (0.5g, 60percent). Yield 60percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | Stage #1: With potassium <i>tert</i>-butylate In tetrahydrofuran at -78℃; for 2 h; Inert atmosphere Stage #2: at -78 - 20℃; for 21 h; Inert atmosphere |
t-BuOK (4 equiv) was allowed to dissolve in dried THF (2 ml/mmol) under argon and the solution was cooled to 78 C. After 20 min, 1.6 equiv of (bromomethyl)triphenylphosphonium bromide was added portionwise and stirring under argon continued for 2 h. Then a solution of aldehyde 8 (2.47 mmol) or 9 (0.74 mmol) in dried THF (2 ml/mmol) was slowly added dropwise and stirring continued for 1 h at 78 C and 20 h at rt. The solution was mixed with the same volume of NH4Cl (aq), acidified with 2 M HCl (aq) and extracted with ethyl acetate (350 ml). The organic layer was dried over Na2SO4, filtered and the solvent was evaporated in vacuo. Purification of the residue by chromatography on a SiO2 column (20percent CHCl3 in hexanes) gave the title compound 7a (510 mg), 77percent, (yellow solid) or 7b (80 mg, 41percent, light-yellow crystalline solid; after chromatography the semi-solid oil was dissolved in hot hexanes, the solution was allowed to reach RT, filtered and concentrated under vacuum). |
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