Structure of 214360-47-1
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 214360-47-1 |
| Formula : | C12H14BNO2 |
| M.W : | 215.06 |
| SMILES Code : | CC1(C)COB(OC1)C1=C(C=CC=C1)C#N |
| MDL No. : | MFCD04039011 |
| InChI Key : | QHAYLPAKZXKQSE-UHFFFAOYSA-N |
| Pubchem ID : | 4198004 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H302 |
| Precautionary Statements: | P280-P305+P351+P338 |
| Num. heavy atoms | 16 |
| Num. arom. heavy atoms | 6 |
| Fraction Csp3 | 0.42 |
| Num. rotatable bonds | 1 |
| Num. H-bond acceptors | 3.0 |
| Num. H-bond donors | 0.0 |
| Molar Refractivity | 62.49 |
| TPSA ? Topological Polar Surface Area: Calculated from |
42.25 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.58 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.33 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.77 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.55 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.25 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-3.01 |
| Solubility | 0.21 mg/ml ; 0.000977 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-3.12 |
| Solubility | 0.165 mg/ml ; 0.000766 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.6 |
| Solubility | 0.0534 mg/ml ; 0.000248 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
Yes |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.78 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.86 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 58% | In toluene; at 20℃; | To a solution of TMP (3.28 mL, 19.4 mmol) in anhydrous THF (20 mL), n-BuLi (1.6 M in hexanes, 11.7 mL, 18.8 mmol) was added at -10 C and the resulting mixture was stirred for 10 min. Then, B(Oi-Pr)3 (5.50 mL, 25 mmol) was added dropwise at -78 C and stirred for additional 5 min before benzonitrile 1 (1.28 mL, 12.5 mmol) was added via a syringe in a single portion and the reaction mixture was stirred at -78 C for 2 h. The solution was left to warm to rt while being stirred for 3 h and then quenched with saturated aqueous NH4Cl (60 mL). The resulting mixture was extracted with EtOAc (3 * 70 mL), the combined organic extracts were dried (Na2SO4) and concentrated in vacuo. The intermediate product 2 was dissolved in anhydrous Tol (50 mL) and 2,2-dimethyl-1,3-propandiol (1.57 g, 15 mmol) was added and then stirred overnight at rt. The organic phase was washed with H2O (3 * 30 mL) and the aqueous extracts were washed with CH2Cl2 (3 * 30 mL). The CH2Cl2-phase was washed with H2O (1 * 30 mL), combined with Tol extract, dried (Na2SO4) and concentrated in vacuo. Recrystallization of the crude product from heptane afforded pure 3 (58%, 2 steps) as a white crystalline solid: M.p. 109-111 C; ESI-MS (m/z): 216.64 [MH]; 1Eta NuMuR (400 MHz, CDCl3): delta 7.88 (d, 1Eta, J = 7.5 Hz), 7.68 (d, 1Eta, J = 7.5 Hz), 7.54 (td, 1Eta, J = 7.5 Hz, 1.0 Hz), 7.48 (td, 1Eta, J = 7.5 Hz, 1.0 Hz), 3.83 (s, 4H), 1.05 (s, 6H) ppm; 13C NMR (160 MHz, CDCl3): delta 135.07, 133.64, 131.44, 130.47, 119.63, 116.56, 72.49, 31.84, 21.83 ppm. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With potassium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 100℃; for 4.0h; | A solution of 18 (2.12 g, 6.88 mmol), Pd(PPh3)4 (400 mg, 0.346 mmol, 5 mol %), <strong>[214360-47-1](2-cyanophenyl)boronic acid 2,2-dimethylpropanediol-1,3-cyclic ester</strong> (1.8 g, 8.37 mmol, 1.2 eq.) and K2CO3 (3.0 g, 27.49 mmol, 4 eq.) in toluene(20 ml)-EtOH(10 ml)-H2O(5 ml) mixture was heated in a sealed tube at 100 C. for 4 hr. The mixture was diluted with 150 ml H2O and extracted with 3×50 ml EtOAc. The combined organic layer was washed with brine, dried over MgSO4, filtered, concentrated and purified by chromatography to provide 23 (1.82 g) as a solid. 1H NMR (400 MHz, CDCl3) 8.66 (d, J=2.0, 1H), 7.86 (dd, J=8.0, 2.0, 1H), 7.78-7.75 (m, 1H), 7.68-7.64 (m, 1H), 7.50-7.45 (m, 3H), 4.08 (dq, J=8.0, 7.2, 4H), 3.46 (d, J=22, 2H), 1.26 (t, 6H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 70% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In ethanol; toluene; at 100℃; for 4.0h;Inert atmosphere; | To a solution of the boronic ester 3 (0.80 g, 3.72 mmol) in Tol (30 mL) and EtOH (3 mL) under argon atmosphere, 4-bromotoluene (0.50 mL, 4.10 mmol), 2 M K2CO3 (3 mL) and Pd(PPh3)4 (3 mol%,0.19 g) were successively added and the resulting reaction mixture was stirred at 100 C for 4 h. After cooling the mixture to rt, saturated aqueous NH4Cl (70 mL) was added, followed by extraction with EtOAc (3 70 mL), drying (Na2SO4) and evaporation in vacuo. Flash column chromatography (hexanes:EtOAc, 3:1) afforded nitrile 4 (70%) as a white solid: M.p. 50-52 C; Rf 0.52 (hexanes:EtOAc, 1:4); tR 15.15 min (30% MeCN / 100% MeCN in 30 min); ESI-MS (m/z): 194.06 [MH]; 1HNMR (400 MHz, CDCl3): delta 7.55-7.51 (m, 1H), 7.50-7.48 (m, 1H), 7.42-7.34 (m, 4H), 7.22 (d, 2H, J . 7.6 Hz), 2.37 (s, 3H) ppm; 13C NMR (160 MHz, CDCl3): d 145.53, 138.69, 135.27, 133.71, 132.76, 129.97, 129.45, 128.61,127.27, 118.88, 111.18, 21.25 ppm. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; for 2.0h;Reflux; | EXAMPLE 70 To a solution of Example 68 (12 mg, 0.02 mmol) in toluene/EtOH/H20 (5 mL:1 mL:1.5 mL) was added Pd(PPh3)4 (6 mg, 0.005 mmol) and 2-(5,5-dimethyl-1,3,2- dioxaborinan-2-yl)benzonitrile (8 mg, 0.04 mmol). The reaction was heated to reflux for2h. After which point the solution was cooled, washed with saturated sodium bicarbonatesolution, dried over MgSO4, filtered and concentrated. MPLC purification (0-60% EtOAc/Hex) gave rise to the desired product. LC/MS: m/e 487.1 (M+H). |

[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 35.2% | With dipotassium hydrogenphosphate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In 1,4-dioxane; at 100℃; for 17.0h;Inert atmosphere; Sealed tube; | To a solution of 276D (35.7 mg, 0.083 mmol) in dioxane (831 mu) was added 2- (5,5-dimethyl-l,3,2-dioxaborinan-2-yl)benzonitrile (23.25 mg, 0.108 mmol), potassium phosphate, dibasic (43.4 mg, 0.249 mmol). The mixture was degassed with nitrogen for 5 minutes. PdCl2(dppf)-CH2Cl2 adduct (3.40 mg, 4.16 muiotaetaomicron) was then added followed by degassing for an additional 5 minutes. The vial was then sealed and heated at 100 C for 17 hours. The reaction was allowed to cool to rt, then diluted with EtOAc and H2O. Layers were separated. The aqueous phase was extracted with EtOAc (2X). The organic phases were combined, dried over Na2S04, filtered and concentrated to give the crude product as a brown oil. The crude material was dissolved in a minimal amount of CH2CI2 and chromatographed. Purification of the crude material by silica gel chromatography using an ISCO machine (24 g column, 35 mL/min, 0-30% EtOAc in hexanes over 25 min, tr = 17 min) gave the title compound (13.9 mg, 0.029 mmol, 35.2 % yield) as a yellow solid. MS(ES): m/z = 452.3 [M+H]+. HPLC Tr: 1.70w. |

[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 1.2 g | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium phosphate; In 1,4-dioxane; at 80℃; for 48.0h;Inert atmosphere; | 2-(5-benzyl-2,5-diazabicyclo[2.2.1]heptan-2-yl)-5-bromoaniline (2 g, 5.58 mmol), 2-(5,5-dimethyl-l,3,2-dioxaborinan-2-yl)benzonitrile (1.44 g, 6.70 mmol), tripotassium phosphate (3.55 g, 16.75 mmol), and PdCi2(dppf) (0.81 g, 1.116 mmol) were taken together and degassed with nitrogen thrice. Dioxane (15 mL) was added and the reaction mixture was degassed again. The reaction mixture was stirred at 80 C for 2 days. The reaction mixture was cooled to room temperature, diluted with EtOAc, and washed with water (3x). The organic layer was dried over a2S04, filtered and concentrated under vacuum. Purification using flash column chromatography (20% to 80% ethyl acetate/hexane gradient) provided 3'-amino-4'-(5- benzyl-2,5-diazabicyclo[2.2.1]heptan-2-yl)biphenyl-2-carbonitrile (1.2 g, 2.71 mmol). 1H NMR (400 MHz, CDCl3) delta ppm 7.72 (dd, 1H, J = 0.8, 7.8 Hz), 7.56-7.61 (m, 1H), 7.49 (dd, 1H, J = 0.80, 8.0 Hz), 7.30-7.40 (m, 5H), 7.23-7.26 (m, 1H), 7.03 (d, 1H, J = 8.4 Hz), 6.92-6.96 (m, 2H), 3.88 (s, 2H), 3.81 (d, 2H, J = 6.0 Hz), 3.61 (d, 1H, J = 9.6 Hz), 3.14 (dd, 1H, J = 9.8, 2.8 Hz), 2.88 (d, 2H, J = 1.2 Hz), 1.97 (d, 1H, J = 9.6 Hz), 1.87 (d, 1H, J = 9.2 Hz). MS(ES): m/z = 381 [M+H]+ |

[ 214360-47-1 ]

[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In 1,4-dioxane; water; at 75℃; for 1.0h;Inert atmosphere; Sealed tube; | i -(( iR,3aS,6S,7R,7a5)-7-ftE)-2-(5-(2-cyanophenyl)pyridin-2-yl)vinyl)-5 ,5-difluoro- i ,6-dimethyl-3 -oxo-octahydroisobenzofuran-3 a-yl)azetidine-3 -carboxamide: i -(( iR,3 aS ,6S,7R,7 aS)-7-((E)-2-(5-bromopyridin-2-yl)vinyl)-5 ,5-difluoro- i ,6-dimethyl-3 -oxo-octahydroisobenzofuran3 a-yl)azetidine-3 -carboxamide (8 mg, 0.0 i 7 mmol), 2-(5,5 -dimethyl- i ,3 ,2-dioxaborinan-2- yl)benzonitrile (5 mg, 0.023 mmol), K2C03 (6 mg, 0.043 mmol) and Pd(PPh3)4 (2 mg, i.73 i .imol) were mixed in dioxane (i.5 mL) and water (0.3 mL) in a sealed tube under N2. The mixture was stirred for i h at 75 C, and cooled to rt. The reaction mixture was concentratedunder reduced pressure and the residue was purified with prep-HPLC (acetonitrile/water with0.08% NH4HCO3 modifier) to afford the title compound. MS ESI calcd. for C28H29F2N403 [M+H] 507, found, 507. ?H NMR (400 MHz, MeOD) oe 8.73 (d, J = 2 Hz, iH), 8.05 (dd, J = 2 Hz, 8.2 Hz, iH), 7.92 (d, J = 8 Hz, iH), 7.84-7.80 (m, iH), 7.69-7.6i (m, 3H), 6.80-6.74 (m,2H), 4.17-4.14 (m, 1H), 4.04-4.01 (m, 1H), 3.57-3.47 (m, 2H), 3.28-3.23 (m, 2H), 2.88-2.82 (m, 1H), 2.40-2.11 (m, 4H), 1.44 (d, J = 6Hz, 3H), 1.08 (d, J = 6.4 Hz, 3H). PAR-i FLIPR 1C50= 5.7 nM. |
[ 112631-29-5 ]
[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 83% | With potassium phosphate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In 1,4-dioxane; at 100℃; for 2.0h;Sealed tube; Inert atmosphere; | B. 4?-(3 ,4-Dihydroquinolin- 1 (2H)-yl)-3 ?-nitro- [1,1 ?-biphenyl] -2-carbonitrile To a solution of 1-(4-bromo-2-nitrophenyl)-1,2,3,4-tetrahydroquinoline (1.43 g,4.3 mmol) in dioxane (14.3 mL), in a sealable reaction vial, was added 2-(5,5-dimethyl-1,3 ,2-dioxaborinan-2-yl)benzonitrile (1.20 g, 5.6 mmol), PdC12(dppf)-CH2C12 adduct (0.18 g, 0.22 mmol) and potassium phosphate, tribasic (2.24 g, 12.9 mmol). The mixture was purged with nitrogen for five minutes before the vial was sealed and the reaction heated at 100C for two hours. The reaction was cooled to room temperature and thesolids were removed by vacuum filtration through a fritted glass funnel. The filtrate was concentrate in vacuo and the crude reaction mixture was purified by flash chromatography to afford the title compound as a dark red solid (1.26 g, 83%). MS(ES):m/z = 356 [M+H], HPLC Tr: 4.40?. |

[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 62.5% | With dipotassium hydrogenphosphate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In 1,4-dioxane; at 95℃; for 17.0h;Sealed tube; | . To a solution of 110D (6 mg, 0.012 mmol) in dioxane (0.2 mL) at RT was added <strong>[214360-47-1]2-(5,5-dimethyl-1,3,2-dioxaborinan-2-yl)benzonitrile</strong> (5.30 mg, 0.025 mmol). The mixture was purged with N2 for 5min. Then potassium phosphate, dibasic (6.43 mg, 0.037 mmol) and PdCl2(dppf)-CH2C12Adduct (1.005 mg, 1.231 pmol) were added. The mixture was sealed and heated at 95C for 17 h. The reaction was cooled to RT, diluted with MeOH, and filtered to remove insoluble material. The filtrate was purified with prep HPLC (3 injections) (Waters Xbridge Cl 8 19 x 100 mm), 20 mL/min flow rate with gradient of 20% B-100% B over 10 min Hold at 100%B for 6min. (A: 0.1% TFA in water/MeOH (90:10), B: 0.1% TFA in water/MeOH (10:90) monitoring at 220. After concentration of desired fraction, 11 OF (4 mg, 7.69 pmol, 62.5 % yield) was obtained as off white solid. MS: Anal. Calc'd for C3lH25F2N302 509.191, found [M+H] 510.2 LC: Tr = 3.89 min (Method A). |

[ 214360-47-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 80% | With tetrakis(triphenylphosphine) palladium(0); caesium carbonate; In 1,2-dimethoxyethane; water; at 90℃; for 3.0h;Inert atmosphere; | A stirred solution of 31G (0.100 g, 0.257 mmol), 2-(5, 5-dimethyl- 1,3,2- dioxaborinan-2-yl) benzonitrile (0.110 g, 0.514 mmol) in DME (3.0 mL)-water (0.750 mL) was treated with Cs2C03 (0.209 g, 0.642 mmol). The misture was purged with argon for 5 min, and tetrakis (triphenylphosphine) palladium (O) (0.018 g, 0.015 mmol) was added. The reaction mixture was heated at 90 C for 3 h, cooled to RT, and diluted with water. The resulting mixture was extracted with DCM (2 x 20 mL), and the combined organic layer was washed with brine (20 mL), dried over Na2S04 and concentrated under reduced pressure. The residue was purified by flash chromatography to afford 31H (off- white solid, 85 mg, 0.21 mmol, 80% yield). LC-MS Anal. Calc'd for C26H25N302 411.4 found [M+H] 412.2, Tr = 3.5 min (Method U). |

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