Structure of 27018-76-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 27018-76-4 |
Formula : | C16H13NO2 |
M.W : | 251.28 |
SMILES Code : | O=C(C1=CN(CC2=CC=CC=C2)C3=C1C=CC=C3)O |
MDL No. : | MFCD00057094 |
InChI Key : | LVYDDRHDOKXFMW-UHFFFAOYSA-N |
Pubchem ID : | 33671 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P280-P301+P312-P302+P352-P305+P351+P338 |
Num. heavy atoms | 19 |
Num. arom. heavy atoms | 15 |
Fraction Csp3 | 0.06 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 74.65 |
TPSA ? Topological Polar Surface Area: Calculated from |
42.23 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.05 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.59 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.39 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.76 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.8 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.92 |
Log S (ESOL):? ESOL: Topological method implemented from |
-4.05 |
Solubility | 0.0226 mg/ml ; 0.00009 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (Ali)? Ali: Topological method implemented from |
-4.16 |
Solubility | 0.0172 mg/ml ; 0.0000686 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.76 |
Solubility | 0.00439 mg/ml ; 0.0000175 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.28 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.67 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With oxalyl dichloride; In dichloromethane; at 20℃; for 3h; | Oxalyl chloride (5.1 mL, 58.5mmol) was added under nitrogen to a solution of l-benzylindole-3-carboxylic acid (3.00 g, 11.9 mmol) in 200 mL of methylene chloride at room temperature. After the addition the reaction was allowed to stir at room temperature for 3 h. The solvent and excess oxalyl chloride were removed under reduced pressure. To remove any residual oxalyl chloride the residue was taken up in benzene and then concentrated under reduced pressure to give l-benzl-lH-indole-3-carbiB.ipllhl6MSpBlig;,''9PAf U 'a^white solid that was used in the next step without additional purification. |
With oxalyl dichloride; In dichloromethane; at 20℃; for 2.66667h; | [0138] Example 10: Synthesis of 1-BENZYL-N-[3 -BROMO-4 -(LH-TETRAAZOL-5- YLMETHOXY)-1, 1 -BIPHENYL-4-YL] METHYL}-N-METHYL-LH-INDOLE-3-CARBOXAMIDE. [0139] STEP 1 : 1-BENZYL-LH-INDOLE-3-CARBONYLCHLORIDE. OXALYLCHLORIDE (7. 1 mL, 81. 4 mmol) was added under nitrogen dropwise over 10 minutes to a suspension of 1-BENZYL-LH- indole-3-carboxylic acid (4. 10G, 16.3 mmol) in 200 ML of methylene chloride at room temperature. When the oxalyl chloride was added there was an immediate evolution of gas and within 30 minutes all of the solid had dissolved. After the addition of the oxalyl chloride the reaction was stirred at room temperature for 2 h. The solvent and excess oxalyl chloride were removed under reduced pressure. The residue was taken up in benzene and then concentrated to dryness under reduced pressure to give L-BENZYL-LH-INDOLE-3-CARBONYL chloride, which was used in the following reaction without purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With sodium hydroxide; In tetrahydrofuran; | (Step 2) Synthesis of 1-benzylindole-3-carboxylic acid In THF (15 ml) was dissolved methyl 1-benzylindole-3-carboxylate (606.1 mg, 2.284 mmol). To the resulting solution was added 0.25N NaOH (8.0 ml) and the mixture was stirred at 70ØC for 18 hours. After the reaction mixture was cooled to room temperature, the solvent was distilled off under reduced pressure. The residue thus obtained was acidified with 1N HCl (5.5 ml). The crystals thus precipitated were collected by filtration under reduced pressure, washed with water and dried under reduced pressure to give 1-benzylindole-3-carboxylic acid (100%) as a light pink amorphous substance. 1H-NMR (DMSO-d6) delta: 5.49 (2H, s), 7.14-7.38 (7H, m), 7.52 (1H, m), 8.00 (1H, m), 8.21 (1H, s), 12.01 (1H, br s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | EDCI (0.33 mmol, 0.07 g) was added in one portion to a suspension of (4-amino-benzyl)-methyl-(tetrahydro-pyran-4-yl)-amine Compound Id (0.25 mmol, 0.06 g), 1-benzyl-lH-indole-3-carboxylic acid Compound 13a (0.22 mmol, 0.06 g) and HOBt (0.22 mmol, 0.03g) in DMF (5.0 mL) at 0C. The resulting suspension was warmed to r.t. and then a crystal ofDMAP and Et3N (0.65 mmol, 0.1 mL) was added and the reaction mixture was stirredovernight. The orange-yellow suspension was poured in'water and was extracted with EtOAc(25 mL). The organic layer was washed with water (2 X 20 mL) followed by 5% NaOHsolution (10 mL) and brine. The organic layer was separated, dried over Na2SO4 and filtered.The solvent was removed in vacua and the resulting residue was purified by preparative TLC(15:1 CH2Cl2/MeOH) to yield Compound 13b as a pale yellow solid (0.07 g, 71%). MS m/e454 (M*H, 100%).; lodomethane (0.5 mL) was added to a solution of Compound 13b (0.08 mmol, 0.04 g)in CH2C12 (1.0 mL) at r.t. The mixture was allowed to stand overnight and a yellow precipitatewas observed. The solvent was removed in vacua and the yellow solid was washed with Et2Oto obtain Compound 162 as a yellow solid (0.05 g, 84%). MS m/e 469 (M+H, 100%). | |
71% | With dmap; benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; triethylamine; In N,N-dimethyl-formamide; at 0 - 20℃; | EDCI (0.33 mmol, 0.07 g) was added in one portion to a suspension of (4-amino-benzyl)-methyl-(tetrahydro-pyran -4-yl)-amine Compound 1d (0.25 mmol, 0.06 g), <strong>[27018-76-4]1-benzyl-1H-indole-3-carboxylic acid</strong> Compound 13a (0.22 mmol, 0.06 g) and HOBt (0.22 mmol, 0.03 g) in DMF (5.0 mL) at 0 C. The resulting suspension was warmed to r.t. and then a crystal of DMAP and Et3N (0.65 mmol, 0.1 mL) was added and the reaction mixture was stirred overnight. The orange-yellow suspension was poured in water and was extracted with EtOAc (25 mL). The organic layer was washed with water (2×20 mL) followed by 5% NaOH solution (10 mL) and brine. The organic layer was separated, dried over Na2SO4 and filtered. The solvent was removed in vacuo and the resulting residue was purified by preparative TLC (15:1 CH2Cl2/MeOH) to yield Compound 13b as a pale yellow solid (0.07 g, 71%). MS m/e 454 (M+H, 100%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
N,N-dimethyl-formamide; In dichloromethane; | Step 1 1-Benzyl-1H-indole-3-carbonyl chloride. A mixture of <strong>[27018-76-4]1-benzyl-1H-indole-3-carboxylic acid</strong> (3.36 g, 13.37 mmol), oxalyl chloride (5.83 mL, 66.85 mmol), 100 mL methylene chloride and a catalytic amount of DMF was stirred at room temperature under nitrogen for 18 h (overnight). The solvent was removed under reduced pressure. To remove excess oxalyl chloride benzene was added and the solvent removed under reduced pressure to give 1-benzyl-1H-indole-3-carbonyl chloride as a brown oil (13.37 mmol) which was immediately used in step 2 without additional purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
EXAMPLE 161 1-benzyl-N-(8-(methylamino)-7,8-dioxooctyl)-1H-indole-3-carboxamide The desired product was prepared by substituting Example 142F and 1-benzyl-3-indole carboxylic acid for 4-aminopyridine and Example 1B, respectively, in Example 6. MS (ESI(+)) m/e 420 (M+H)+; 1H NMR (DMSO-d6) delta8.53-8.46 (br m, 1H), 8.16-8.13 (m, 1H), 8.09 (s, 1H), 7.88-7.85 (br m, 1H), 7.50 (d, 1H), 7.36-7.22 (m, 5H), 7.20-7.09 (m, 2H), 5.45 (s, 2H), 3.26-3.19 (m, 2H), 2.80 (t, 2H), 2.64 (d, 3H), 1.56-1.46 (m, 4H), 1.35-1.28 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; In N,N-dimethyl-formamide; | EXAMPLE 6 To a stirring solution of (3S)-3-[(2S)-2-amino-5-benzyloxycarbonylpentanoyl]oxy-4-(6-ethyl-2-naphthyl)butanamide hydrochloride (0.20 g), <strong>[27018-76-4]1-benzylindole-3-carboxylic acid</strong> (105 mg) and HOBt (62 mg) in DMF (2 ml) was added WSCD (71 mg) at 0 C. After being stirred at room temperature overnight, the mixture was diluted with ethyl acetate and washed with 1N hydrochloric acid, aqueous ammonium chloride, aqueous sodium bicarbonate and brine, successively. The organic layer was dried over magnesium sulfate and concentrated in vacuo to give (3S)-3-[(2S)-2-(1-benzylindol-3-ylcarbonylamino)-5-benzyloxycarbonylpentanoyl]oxy-4-(6-ethyl-2-naphthyl)butanamide (0.26 g). NMR (CDCl3, delta): 8.20 (1H, s), 8.1 (2H, m), 7.1-7.8 (19H, m), 6.66 (1H, d, J=10Hz), 6.1 (1H, br s), 5.6 (1H, m), 5.34 (2H, s), 5.08 (2H, s), 4.7 (1H, m), 3.1 (2H, m), 2.74 (2H, q, J=7.5Hz), 2.1-2.6 (4H, m), 1.4-1.9 (4H, m), 1.28 (3H, t, J=7.5Hz) ESI-MS: 724 [M+H] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With triethylamine; In dichloromethane; | (Step 3) Synthesis of methyl 4-((1-benzyl-3-indolylcarbonyl)amino)-3-chlorophenylacetate To a solution of <strong>[27018-76-4]1-benzylindole-3-carboxylic acid</strong> (201.3 mg, 0.801 mmol) in methylene chloride (4.0 ml) was added oxalyl chloride (103.1 ael, 1.202 mmol) under stirring at -15ØC. The reaction mixture was stirred at room temperature for 2.5 hours and then, distilled under reduced pressure to remove the solvent. The residue was dissolved in methylene chloride (4.0 ml) and to the resulting solution were added a solution of methyl 3-chloro-4-aminophenylacetate (167.9 mg, 0.841 mmol) in methylene chloride (4.0 ml) and triethylamine (0.35 ml, 2.523 mmol) under stirring at room temperature. The reaction mixture was stirred at room temperature for 18 hours. The reaction mixture was distilled under reduced pressure to remove the solvent. The residue was diluted with chloroform, washed with 1N HCl dried over anhydrous sodium sulfate and distilled under reduced pressure to remove the solvent, whereby methyl 4-((1-benzyl-3-indolylcarbonyl)amino)-3-chlorophenylacetate (341.3 mg, 98%) was obtained. The compound was provided for the subsequent reaction without further purification. 1H-NMR (CDCl3) delta: 3.59 (2H, s), 3.71 (3H, s,), 5.38 (2H, s), 7.08-7.42 (10H, m), 7.87 (1H, s), 8.16 (1H, d, J=7.6Hz), 8.29 (1H, s), 8.58 (1H, d, J=8.0Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | 1-benzyl-1H-indole-3-carboxylic acid To a stirred solution of 0.50 g (3.10 mmol) 1H-indole-3-carboxylic acid in 5 ml DMF was added 0.27 g (6.75 mmol) of NaH (60% in oil). The mixture was stirred at RT for 30 min. and then 0.39 ml (3.28 mmol) of benzyl bromid was added. The mixture was stirred an additional hour and then poured onto water and extracted with ethyl acetate. The combined organic phases were dried over Na2SO4 and concentrated in vacuo. Crystallization in Et2O afforded 0.61 g (78%) of 1-benzyl-1H-indole-3-carboxylic acid as a white solid. ES-MS m/e (%): 250 (M-H+). |
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