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Chemical Structure| 36936-23-9 Chemical Structure| 36936-23-9

Structure of 36936-23-9

Chemical Structure| 36936-23-9

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Product Details of [ 36936-23-9 ]

CAS No. :36936-23-9
Formula : C6H7ClN2
M.W : 142.59
SMILES Code : NC1=NC(C)=C(Cl)C=C1
MDL No. :MFCD09453335
InChI Key :SHIKRPPKGCWKJO-UHFFFAOYSA-N
Pubchem ID :12251007

Safety of [ 36936-23-9 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H319
Precautionary Statements:P305+P351+P338

Computational Chemistry of [ 36936-23-9 ] Show Less

Physicochemical Properties

Num. heavy atoms 9
Num. arom. heavy atoms 6
Fraction Csp3 0.17
Num. rotatable bonds 0
Num. H-bond acceptors 1.0
Num. H-bond donors 1.0
Molar Refractivity 38.62
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

38.91 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.53
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

1.53
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

1.63
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

1.16
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

1.74
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

1.52

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.18
Solubility 0.939 mg/ml ; 0.00659 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-1.96
Solubility 1.58 mg/ml ; 0.0111 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-2.64
Solubility 0.324 mg/ml ; 0.00227 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.08 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.42

Application In Synthesis of [ 36936-23-9 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 36936-23-9 ]

[ 36936-23-9 ] Synthesis Path-Downstream   1~36

  • 2
  • conc H2 SO4 [ No CAS ]
  • [ 36936-23-9 ]
  • [ 56960-82-8 ]
YieldReaction ConditionsOperation in experiment
5.28 g (67%) With aq. NaOH; nitric acid; 2-Amino-5-chloro-6-methyl-3-nitropyridine (46) To stirred conc H2 SO4 (70 mL) at 0 C. was added 45 (6.0 g, 41.8 mmol) in portions. To the resulting dark brown solution was added dropwise 70% HNO3 (3.5 mL, 54 mmol) at 0 C. After the addition, the reaction mixture was stirred at 50 C. under N2 for 2.5 h, cooled to room temperature and poured into crushed ice (about 700 g). The mixture was basified to pH 9 by the addition of 40% aq. NaOH dropwise with stirring and cooling (ice-water bath). The precipitate was filtered, washed with water (4*100 mL) and MeOH (3*25 mL), and dried to give 5.28 g (67%) of 46 as a yellow powder, mp 214-5 C. (lit. 214-6 C., Cress et al., J. Org. Chem. 93-6 (1976)). 1 H NMR (DMSO-d6) delta2.445 (s, 3H), 8.011 (bs, 2H), 8.340 (s, 1H).
  • 3
  • [ 1824-81-3 ]
  • [ 36936-23-9 ]
YieldReaction ConditionsOperation in experiment
With N-chloro-succinimide; In hexane; N,N-dimethyl-formamide; 2-Amino-5-chloro-6-methylpyridine (45) To a stirred solution of 2-amino-6-methylpyridine (10.80 g, 100.0 mmol) in dry DMF (50 mL) was added dropwise a solution of NCS (13.35 g, 100.0 mmol) in dry DMF (60 mL) at 0 C. over 20 min. The resulting brown yellow solution was stirred at 0 C. for 1 h, and at room temperature for 3 h, then poured into ice-water (about 300 mL). The resulting mixture was extracted with EtOAc (4*100 mL). The extracts were combined, washed with brine (6*50 mL), dried (MgSO4), and rota-evaporated. To the residual viscous black oil was added hexane (200 mL) and it was heated to boiling with stirring. The hot hexane solution was decanted carefully, concentrated to about 60 ml, then allowed to stand at room temperature overnight. The resulting crystals were filtered and dried at room temperature in vacuo, giving 6.06 g (42%) of 45 as orange-colored long needles, mp 74-5 C. (lit. 73-4 C., Cress et al., J. Org. Chem. 93-6 (1976)). 1 H NMR (CDCl3) delta2.439 (s, 3H), 4.376 (bs, 2H), 6.302 (d, 1H, J=8.5), 7.340 (d, 1H, J=8.5).
  • 4
  • aqueous NaHSO3 [ No CAS ]
  • [ 36936-23-9 ]
  • [ 211501-17-6 ]
YieldReaction ConditionsOperation in experiment
With m-chloroperoxybenzoic acid; In hydrogenchloride; dichloromethane; Step E Preparation of 5-chloro-6-methyl-2-pyridinamine 1-oxide, hydrochloride To a solution of 110 g (666 mmol) of <strong>[36936-23-9]5-chloro-6-methyl-pyridineamine</strong> (Kress, T. J.; Moore, L. L.; Costantino, S. M. J. Org. Chem. (1976) 41(1), pp 93-96) in 1 L of dichloromethane was added 164 g (666 mmol) of m-chloroperoxybenzoic acid. The mixture was stirred at room temperature overnight and 20 g more of m-chloroperoxybenzoic acid was added. The mixture was stirred 1 h and 50 mL of saturated aqueous NaHSO3 were added. The solvent was removed and the residue was taken up in 1L of 1N HCl. The insoluble solids were filtered and washed with 3N HCl. Solvent was removed from the aqueous filtrate to give a solid which was recrystallized from ethanol affording 56.9 g of 5-chloro-6-methyl-2-pyridinamine 1-oxide, hydrochloride as a white solid, mp>250 C.
  • 5
  • [ 372118-01-9 ]
  • [ 36936-23-9 ]
  • methyl 6-chloro-4-(5-chloro-6-methylpyridin-2-ylamino)pyridazine-3-carboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
20% In acetonitrile; at 130℃; for 36.0h; Step 1 Methyl 6-chloro-4-(5-chloro-6-methylpyridin-2-ylamino)pyridazine-3-carboxylate A pressure tube was charged with methyl 4,6-dichloropyridazine-3-carboxylate (2 g, 9.66 mmol) and <strong>[36936-23-9]5-chloro-6-methylpyridin-2-amine</strong> (2.76 g, 19.3 mmol). To the mixture was added acetonitrile (12 mL) and the reaction mixture heated with stirring at 130 C. for 1.5 days. After cooling to room temperature, the acetonitrile was removed in vacuo. The residue obtained was purified by chromatography (silica, 80 g, 50 mum from Analogix, 0% to 5% acetone in dichloromethane over 20 min., holding at 5% for 5 min, then increasing the gradient from 5% to 10% over the next 20 min) to give methyl 6-chloro-4-(5-chloro-6-methylpyridin-2-ylamino)pyridazine-3-carboxylate (618 mg, 20%) as an orange solid. 1H NMR (400 MHz, CHLOROFORM-d) delta ppm 10.70 (br. s., 1H), 9.18 (s, 1H), 7.63 (d, J=8.34 Hz, 1H), 6.78 (d, J=8.34 Hz, 1H), 4.12 (s, 3H), 2.66 (s, 3H), 1.58 (br. s., 1H); LC-MS 313 [M+H]+.
  • 7
  • [ 36936-23-9 ]
  • [ 1446792-12-6 ]
  • 8
  • [ 36936-23-9 ]
  • [ 1446790-67-5 ]
  • 10
  • [ 679406-03-2 ]
  • [ 36936-23-9 ]
  • methyl 6-chloro-4-(5-chloro-6-methylpyridin-2-ylamino)pyridazine-3-carboxylate [ No CAS ]
  • 11
  • [ 36936-23-9 ]
  • [ 1446790-64-2 ]
  • 12
  • [ 36936-23-9 ]
  • N-(5-chloro-6-methylpyridin-2-yl)-6-(4-methylpiperazin-1-yl)-1H-imidazo[4,5-c]pyridin-2-amine [ No CAS ]
  • 13
  • [ 463-71-8 ]
  • [ 36936-23-9 ]
  • C7H5ClN2S [ No CAS ]
  • 14
  • [ 36936-23-9 ]
  • C22H22ClN3O3S [ No CAS ]
  • 15
  • [ 36936-23-9 ]
  • C22H23ClN4O3S [ No CAS ]
  • 16
  • [ 36936-23-9 ]
  • C22H21ClN4O2S [ No CAS ]
  • 17
  • [ 36936-23-9 ]
  • 4-(tert-butyl)-N-(4-chloro-2-(pyridin-3-yl)pyrazolo[1,5-a]pyridin-7-yl)benzenesulfonamide [ No CAS ]
  • 18
  • [ 36936-23-9 ]
  • 3-(7-((4-(tert-butyl)phenyl)sulfonamido)-4-chloropyrazolo[1,5-a]pyridin-2-yl)pyridine 1-oxide [ No CAS ]
  • 19
  • [ 36936-23-9 ]
  • 4-(tert-butyl)-N-(5-chloro-6-(2-oxo-2-(1-trityl-1H-imidazol-4-yl)ethyl)pyridin-2-yl)benzenesulfonamide [ No CAS ]
  • 20
  • [ 36936-23-9 ]
  • 4-(tert-butyl)-N-(5-chloro-6-(2-(hydroxyimino)-2-(1-trityl-1H-imidazol-4-yl)ethyl)pyridin-2-yl)benzenesulfonamide [ No CAS ]
  • 21
  • [ 36936-23-9 ]
  • C39H34ClN5O2S [ No CAS ]
  • 22
  • [ 36936-23-9 ]
  • C39H34ClN5O2S [ No CAS ]
  • 23
  • [ 36936-23-9 ]
  • 4-(tert-butyl)-N-(4-chloro-2-(1H-imidazol-4-yl)pyrazolo[1,5-a]pyridin-7-yl)benzenesulfonamide [ No CAS ]
  • 24
  • [ 36936-23-9 ]
  • [4-(tert-butyl)-N-(4-cyano-2-(pyridin-3-yl)pyrazolo[1,5-a] pyridin-7-yl)benzenesulfonamide] [ No CAS ]
  • 25
  • [ 15084-51-2 ]
  • [ 36936-23-9 ]
  • 4-(tert-butyl)-N-(5-chloro-6-methylpyridin-2-yl)benzenesulfonamide [ No CAS ]
YieldReaction ConditionsOperation in experiment
84% With pyridine; In chloroform; at 0 - 100℃; for 12.0h; To a stirred solution of compound LXVIII (3 g, 21.12 mmol) in chloroform (60 ml) was addedpyridine (15 ml) at 0C followed by addition of 4-tert-butylbenzenesulfonyl chloride (XI, 5.89g, 25.34 mmol). The reaction mixture was heated at 100C for 12 h, cooled to room temperature and concentrated under reduced pressure. The crude material was diluted with a saturated ammonium chloride solution and extracted with ethyl acetate. The organic layer was washed with brine solution, dried over anhydrous Na2SO4 and evaporated under reducedpressure to afford 4-(tert-butyl)-N-(5 -chloro-6-methylpyridin-2-yl)benzenesulfonamide(LXIX; 6 g, 84% yield). ?H NMR (400 MHz, DMSO-d6) oe 11.11 (bs, 1H), 7.86-7.84 (d, J8.4 Hz, 2H), 7.72-7.70 (d, J 8.8 Hz, 1H), 7.60-7.58 (d, J 8.4 Hz, 2H), 6.94-6.93 (d, J= 7.6Hz, 1H), 2.36 (s, 3H), 1.27 (s, 9H). MS (M+1): 339.2.
  • 26
  • [ 36936-23-9 ]
  • [ 123280-64-8 ]
YieldReaction ConditionsOperation in experiment
44.6% With tert.-butylnitrite; copper dichloride; In dichloromethane; at 20℃; for 0.5h; Intermediate IXc 3 ,6-dichloro-2-methylpyridine To a suspension of <strong>[36936-23-9]5-chloro-6-methylpyridin-2-amine</strong> (7.5 g, 52.60 mmol, Combi- Blocks) in DCM (200 niL) was added copper(II) chloride (9.19 g, 68.38 mmol) and stirred at for 10 min. tert-butyl nitrite (12.50 mL, 105.20 mmol) was added and the stirring was continued further 30 min at RT. The colour was changed to dark blue. The reaction was monitored by LCMS. LCMS showed the completion of reaction. The reaction mixture was washed with water, brine solution, and organic layer was dried on sodium sulphate and concentrated under vacuum to get crude. The product was purified by column chromatography using 5 % ethyl acetate :hexane mixture to get 3,6-dichloro- 2-methylpyridine (3.80 g, 44.6 %) as a yellow liquid. MS (ES+), (M+H)+ = 162.15 for C6H5C12N.
  • 27
  • [ 1824-81-3 ]
  • [ 537-46-2 ]
  • [ 7732-18-5 ]
  • [ 36936-23-9 ]
YieldReaction ConditionsOperation in experiment
With NCS; Example 172 Synthesis of 5-chloro-6-methylpyridin-2-amine. To a solution of 6-methylpyridin-2-amine (1.08 g, 1 mmol) in DMF (10 mL) was added NCS (1.34 g, 1 mmol), then the mixture was stirred at RT for 12 h. The mixture was treated with ice H2O and extracted with EtOAc (100 mL). The organic layer was washed with brine, dried over Na2SO4, concentrated to give the crude product which was purified with silica gel chromatography (PE/EA=2:1) to give 5-chloro-6-methylpyridin-2-amine as a yellow solid (750 mg, yield: 53%). ESI-MS [M+H]+: 142.9.
  • 28
  • [ 36936-23-9 ]
  • [ 534-07-6 ]
  • 6-chloro-2-(chloromethyl)-5-methylimidazo[1,2-a]pyridine [ No CAS ]
YieldReaction ConditionsOperation in experiment
With sodium hydrogencarbonate; Synthesis of 6-chloro-2-(chloromethyl)-5-methylimidazo[1,2-a]pyridine. To a solution of <strong>[36936-23-9]5-chloro-6-methylpyridin-2-amine</strong> (500 mg, 3.51 mmol) in DME (20 mL) was added 1,3-dichloropropan-2-one (667 mg, 5.26 mmol), then the mixture was stirred at 90 C. for overnight. The mixture was treated with NaHCO3 to adjust pH 8 and extracted with EtOAc (100 mL*3). The organic layers were washed with brine, dried over Na2SO4, concentrated to give the crude product which was purified with silica gel chromatography (EA/DCM=1:5) to give 6-chloro-2-(chloromethyl)-5-methylimidazo[1,2-a]pyridine (357 mg, yield: 47%) as white oil. ESI-MS [M+H]+: 214.9.
  • 29
  • [ 36936-23-9 ]
  • [ 872363-02-5 ]
  • 30
  • [ 36936-23-9 ]
  • [ 118000-39-8 ]
  • 31
  • [ 36936-23-9 ]
  • N-((7-chloroimidazo[1,5-a]pyridin-1-yl)methyl)-1-((5-methylimidazo[1,2-a]pyridin-2-yl)methyl)-1H-pyrazole-4-carboxamide [ No CAS ]
  • 32
  • [ 36936-23-9 ]
  • 2-(azidomethyl)-6-chloro-5-methylimidazo[1,2-a]pyridine [ No CAS ]
  • 33
  • [ 36936-23-9 ]
  • ethyl 1-((6-chloro-5-methylimidazo[1,2-a]pyridin-2-yl)methyl)-1H-1,2,3-triazole-4-carboxylate [ No CAS ]
  • 34
  • [ 36936-23-9 ]
  • 1-((6-chloro-5-methylimidazo[1,2-a]pyridin-2-yl)methyl)-N-((7-chloroimidazo[1,5-a]pyridin-1-yl)methyl)-1H-pyrazole-4-carboxamide [ No CAS ]
  • 35
  • [ 70-23-5 ]
  • [ 36936-23-9 ]
  • ethyl 6-chloro-5-methylimidazo[1,2-a]pyridine-2-carboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
Example 9 Synthesis of (5-methylimidazo[1,2-a]pyridin-2-yl)methanol. A solution of <strong>[36936-23-9]5-chloro-6-methylpyridin-2-amine</strong> (568 mg, 4.0 mmol), ethyl 3-bromo-2-oxopropanoate (1.2 g, 6.0 mmol) in dry EtOH (10 mL) was stirred at 80 C. for 8 h. The mixture was concentrated and purified by silica gel chromatography (DCM/MeOH=20/1) to give ethyl 6-chloro-5-methylimidazo[1,2-a]pyridine-2-carboxylate (800 mg, yield: 84.0%) as a yellow solid. ESI-MS [M+H]+: 239.1.
  • 36
  • [ 36936-23-9 ]
  • [ 6160-65-2 ]
  • C7H5ClN2S [ No CAS ]
 

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Technical Information

Categories

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