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[ CAS No. 3932-97-6 ] {[proInfo.proName]}

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Chemical Structure| 3932-97-6
Chemical Structure| 3932-97-6
Structure of 3932-97-6 * Storage: {[proInfo.prStorage]}
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Product Details of [ 3932-97-6 ]

CAS No. :3932-97-6 MDL No. :MFCD03426408
Formula : C5HCl2F3N2 Boiling Point : -
Linear Structure Formula :- InChI Key :IDRUEHMBFUJKAK-UHFFFAOYSA-N
M.W : 216.98 Pubchem ID :2782774
Synonyms :

Calculated chemistry of [ 3932-97-6 ]

Physicochemical Properties

Num. heavy atoms : 12
Num. arom. heavy atoms : 6
Fraction Csp3 : 0.2
Num. rotatable bonds : 1
Num. H-bond acceptors : 5.0
Num. H-bond donors : 0.0
Molar Refractivity : 37.05
TPSA : 25.78 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -5.49 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.85
Log Po/w (XLOGP3) : 3.01
Log Po/w (WLOGP) : 3.95
Log Po/w (MLOGP) : 1.92
Log Po/w (SILICOS-IT) : 3.3
Consensus Log Po/w : 2.81

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -3.39
Solubility : 0.0893 mg/ml ; 0.000412 mol/l
Class : Soluble
Log S (Ali) : -3.22
Solubility : 0.132 mg/ml ; 0.000608 mol/l
Class : Soluble
Log S (SILICOS-IT) : -3.78
Solubility : 0.0362 mg/ml ; 0.000167 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.82

Safety of [ 3932-97-6 ]

Signal Word:Danger Class:8,6.1
Precautionary Statements:P264-P270-P280-P301+P310+P330-P301+P330+P331-P303+P361+P353-P304+P340+P310-P305+P351+P338+P310-P363-P405-P501 UN#:2922
Hazard Statements:H301-H314 Packing Group:
GHS Pictogram:

Application In Synthesis of [ 3932-97-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 3932-97-6 ]
  • Downstream synthetic route of [ 3932-97-6 ]

[ 3932-97-6 ] Synthesis Path-Upstream   1~4

  • 1
  • [ 54-20-6 ]
  • [ 3932-97-6 ]
YieldReaction ConditionsOperation in experiment
95% at 85 - 100℃; for 20 h; Preparation of 2.4-dichloro-5-trifluoromethylpyrimidine (3)
5-Trifluoromethyluracil (250 g, 1.39 mol) and phosphorous oxychloride (655 mL, 6.94 mol, 5 equiv) were charged to a 3 L 4-neck flask equipped with overhead stirrer, a reflux condenser, an addition funnel and an internal theromocouple.
The contents were maintained under a nitrogen atmosphere as concentrated phosphoric acid (85 wt percent, 9.5 mL, 0.1 equiv) was added in one portion to the slurry, resulting in a moderate exotherm.
Diisopropylethylamine (245 mL, 1.39 mol, 1 equiv) was then added dropwise over 15 minutes at such a rate that the internal temperature of the reaction reached 85-90° C. by the end of the addition.
By the end of the amine addition the reaction mixture was a homogenous light-orange solution.
Heating was initiated and the orange solution was maintained at 100° C. for 20 hours, at which time HPLC analysis of the reaction mixture indicated that the starting material was consumed.
External heating was removed and the contents of the flask were cooled to 40° C. and then added dropwise to a cooled mixture of 3N HCl (5 L, 10 equiv) and diethyl ether (2 L) keeping the temperature of the quench pot between 10 and 15° C.
The layers were separated, and the aqueous layer was extracted once with ether (1 L).
The combined organic layers were combined, washed with water until the washes were neutral (5*1.5 L washes), dried with MgSO4 and concentrated to provide 288 g (95percent yield) of a light yellow-orange oil of 96percent purity (HPLC).
This material can be further purified by distillation (bp 109° C. at 79 mmHg).
95% With phosphoric acid; N-ethyl-N,N-diisopropylamine; trichlorophosphate In water at 85 - 100℃; for 20.25 h; 5-Trifluoromethyluracil (250 g, 1.39 mol) and phosphorous oxychloride (655 mL, 6.94 mol, 5 equiv) were charged to a 3 L 4-neck flask equipped with overhead stirrer, a reflux condenser, an addition funnel and an internal theromocouple. The contents were maintained under a nitrogen atmosphere as concentrated phosphoric acid (85 wt percent, 9.5 mL, 0.1 equiv) was added in one portion to the slurry, resulting in a moderate exotherm. Diisopropylethylamine (245 mL, 1.39 mol, 1 equiv) was then added dropwise over 15 min at such a rate that the internal temperature of the reaction reached 85-90° C. by the end of the addition. By the end of the amine addition the reaction mixture was a homogenous light-orange solution. Heating was initiated and the orange solution was maintained at 100° C. for 20 h, at which time HPLC analysis of the reaction mixture indicated that the starting material was consumed. External heating was removed and the contents of the flask were cooled to 40° C. and then added dropwise to a cooled mixture of 3NHCl (5 L, 10 equiv) and diethyl ether (2 L) keeping the temperature of the quench pot between 10 and 15° C. The layers were separated, and the aqueous layer was extracted once with ether (1 L). The combined organic layers were combined, washed with water until the washes were neutral (5.x.1.5 L washes), dried with MgSO4 and concentrated to provide 288 g (95percent yield) of a light yellow-orange oil of 96percent purity (HPLC). This material can be further purified by distillation (bp 109° C. at 79 mmHg).
95% at 85 - 100℃; for 20.25 h; 5-Trifluoromethyluracil (250 g, 1.39 mol) and phosphorous oxychloride (655 mL, 6.94 mol, 5 equiv) were charged to a 3 L 4-neck flask equipped with overhead stirrer, a reflux condenser, an addition funnel and an internal theromocouple. The contents were maintained under a nitrogen atmosphere as concentrated phosphoric acid (85 wt percent, 9.5 mL, 0.1 equiv) was added in one portion to the slurry, resulting in a moderate exotherm. Diisopropylethylamine (245 mL, 1.39 mol, 1 equiv) was then added dropwise over 15 minutes at such a rate that the internal temperature of the reaction reached 85-90° C. by the end of the addition. By the end of the amine addition the reaction mixture was a homogenous light-orange solution. Heating was initiated and the orange solution was maintained at 100° C. for 20 hours, at which time HPLC analysis of the reaction mixture indicated that the starting material was consumed. External heating was removed and the contents of the flask were cooled to 40° C. and then added dropwise to a cooled mixture of 3N HCl (5 L, 10 equiv) and diethyl ether (2 L) keeping the temperature of the quench pot between 10 and 15° C. The layers were separated, and the aqueous layer was extracted once with ether (1 L). The combined organic layers were combined, washed with water until the washes were neutral (5.x.1.5 L washes), dried with MgSO4 and concentrated to provide 288 g (95percent yield) of a light yellow-orange oil of 96percent purity (HPLC). This material can be further purified by distillation (bp 109° C. at 79 mmHg).
72.9% at 110 - 120℃; 10060] To a jacket reactor (500 mE) is added 5-trifluorom- ethyluracil (5-TFU, 40 g, 70percent assay, .-0.16 mol, 1.0 eq.), H3P04 (2.4 g; 0.02 mol, 0.13 eq.) andPOCl3 (128 g; 0.83 mol, 5.2 eq.) (a white suspension is formed). DIPEA (35 g, 0.27 mol, 1.69 eq.) is addedto the suspension dropwise in about 10 mm and then the reaction mixture is heated to 110-120° C. (clear solution). The reaction is monitored with HPEC until ratio 5-TFU:5-TFP<5 :95 (reactionnormally finished in 7-8 h; if reaction is not complete, additional P0C13 (5 g, 0.032 mol, 0.2 eq) and DIPEA (1.3 g, 0.01 mol, 0.06 eq) are charged and stirred for another 1-2 h). The reaction is then cooled tort and n-butyl acetate (80 mE) is added to the reaction mixture. About 60 mE of distillate (POC13 and some n-butyl acetate) is collected at 63-65° C./450-500 mbar. The resulting dark solution is slowly added to a mixture of conc. HC1 (165 g, 27 weight percent, 1.23 mol, 7.7 eq.) and methyl tertiary butyl ether (MTBE, 120 mE) while the temperature is maintained below 20° C. The organic phase is separated and the aqueous phase is extracted with MTBE (2x120 mE). The organic phase is gathered, washed with water until the pH value reaches ca. 5-6. MTBE is removed under reduced pressure (.-42° C./200 mbar), the final product is purified through distillation (87- 89° C./55 mbar) to afford 5-TFP as colorless oil (25.3 g, yield72.9percent; purity 98percent).2,4-dichloro-5-trifluoromethylpyrimidine (5-TFP)10061] Colorless to light yellow oil10062] ‘H NMR (CD3COCD3): ö 8.8 (s, 1 H),10063] ‘9F NMR (CD3COCD3): ö —63.710064] ESI MS (m/z) 216 [M—1]
72.9% at 110 - 120℃; To a jacket reactor (500 mL) is added 5-trifluoromethyluracil (5-TFU, 40 g, ~ 70 percent assay, ~ 0.16 mol, 1 .0 eq.), H3PO4 (2.4 g; 0.02 mol, 0.13 eq.) and POCI3 (128 g; 0.83 mol, 5.2 eq.) (a white suspension is formed). DIPEA (35 g, 0.27 mol, 1 .69 eq.) is added to the suspension dropwise in about 10 min and then the reaction mixture is heated to 1 10-120 °C (clear solution). The reaction is monitored with HPLC until ratio 5-TFU:5-TFP < 5:95 (reaction normally finished in 7-8 h; if reaction is not complete, additional POCI3 (5 g, 0.032 mol, 0.2 eq) and DIPEA (1 .3 g, 0.01 mol, 0.06 eq) are charged and stirred for another 1 -2 h). The reaction is then cooled to rt and n-butyl acetate (80 mL) is added to the reaction mixture. About 60 mL of distillate (POCI3 and some n-butyl acetate) is collected at 63-65 °C/450-500 mbar. The resulting dark solution is slowly added to a mixture of cone. HCI (165 g, 27 weight percent, 1 .23 mol, 7.7 eq.) and methyl tertiary butyl ether (MTBE, 120 mL) while the temperature is maintained below 20 °C. The organic phase is separated and the aqueous phase is extracted with MTBE (2 x 120 mL). The organic phase is gathered, washed with water until the pH value reaches ca. 5-6. MTBE is removed under reduced pressure (~ 42 °C/200 mbar), the final product is purified through distillation (87-89 °C/55 mbar) to afford 5-TFP as colorless oil (25.3 g, yield 72.9 percent; purity 98 percent). 2,4-dichloro-5-trifluoromethylpyrimidine (5-TFP) Colorless to light yellow oil 1H NMR (CD3COCD3): δ 8.8 (s, 1 H), 19F NMR (CD3COCD3): δ -63.7 ESI MS (m/z) 216 [M-1 ]"
61% at 25 - 90℃; for 5.16667 - 6.16667 h; 48 g (267 mmol) 5-trifluoromethyluracil is suspended in 210 mL phosphorus oxychloride (POCl3) while moisture is excluded. 47.7 g (320 mmol, 1.2 eq) diethylaniline is slowly added dropwise to this suspension, such that the temperature remains between 25° C. and 30° C. After the addition has ended the mixture is stirred for another 5-10 min in the water bath and the mixture is heated for 5-6 h at 80-90° C. while moisture is excluded. The excess POCl3 is destroyed by stirring-into about 1200 g sulphuric acid containing ice water and the aqueous phase is immediately extracted 3.x. with in each case 500 ml ether or t-butyl-methyl-ether. The combined ethereal extracts are washed 2.x. with 300 mL sulphuric acid-containing ice water (about 0.1 M) and with cold saline solution and immediately dried on sodium sulphate. The drying agent is filtered off and the solvent is eliminated in vacuo. The residue is distilled in vacuo (10 mbar) through a short column (20 cm) (head temperature: 65-70° C.), to obtain 35.3 g (0.163 mol, 61percent) of a colourless liquid which is poured off and stored under argon. DC: Rf=0.83 (cHex:EE=3:1)
17.7% at 85 - 100℃; for 36 h; Inert atmosphere 5- (trifluoromethyl) pyrimidine -2,2- (1H, 3H) - dione (18g, 0.1mol) was added to a 250ml three-necked flask, was added phosphorus oxychloride (45.8ml, 5eq), phosphoric acid (O.leq) under nitrogen, was heated in an oil bath, was slowly added dropwise diisopropylethyl amine (16ml) between 85 ~ 90 , temperature was raised to 100 dropwise completed reaction was refluxed 36h, evaporated to dryness under reduced pressure The solvent, i.e. by column chromatography an oily liquid 2,4-dichloro-5- (trifluoromethyl) pyrimidine (3.8 g of, yield 17.7percent).

Reference: [1] Patent: US2005/256145, 2005, A1, . Location in patent: Page/Page column 43
[2] Patent: US2005/256125, 2005, A1, . Location in patent: Page/Page column 29
[3] Patent: US2005/256144, 2005, A1, . Location in patent: Page/Page column 20
[4] Patent: US2014/135497, 2014, A1, . Location in patent: Paragraph 0060; 0061; 0062; 0063; 0064
[5] Patent: WO2014/76085, 2014, A1, . Location in patent: Page/Page column 9-10
[6] Patent: US2007/32514, 2007, A1, . Location in patent: Page/Page column 10
[7] Patent: CN105461695, 2016, A, . Location in patent: Paragraph 0136; 0137
[8] Patent: WO2004/48343, 2004, A1, . Location in patent: Page 74
[9] Patent: WO2008/77885, 2008, A2, . Location in patent: Page/Page column 13
[10] Patent: WO2009/63240, 2009, A1, . Location in patent: Page/Page column 43-44
[11] Patent: US2009/163467, 2009, A1, . Location in patent: Page/Page column 8
[12] Patent: WO2009/71535, 2009, A1, . Location in patent: Page/Page column 22-23
[13] Patent: WO2010/55117, 2010, A1, . Location in patent: Page/Page column 29
[14] Patent: WO2010/106097, 2010, A1, . Location in patent: Page/Page column 29-30
[15] Patent: WO2010/136559, 2010, A1, . Location in patent: Page/Page column 34
[16] Patent: US2011/33441, 2011, A1, . Location in patent: Page/Page column 8
[17] Journal of Fluorine Chemistry, 2015, vol. 179, p. 150 - 158
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  • [ 69034-12-4 ]
Reference: [1] Patent: WO2009/150240, 2009, A1, . Location in patent: Page/Page column 132
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  • [ 939791-38-5 ]
Reference: [1] Patent: US2011/33441, 2011, A1,
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  • [ 3932-97-6 ]
  • [ 1374640-70-6 ]
Reference: [1] Patent: WO2013/138495, 2013, A1,
[2] Patent: WO2013/138502, 2013, A1,
[3] Patent: WO2014/182593, 2014, A1,
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