Structure of 55304-90-0
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CAS No. : | 55304-90-0 |
Formula : | C6H5Cl2NO |
M.W : | 178.02 |
SMILES Code : | OCC1=CC=C(Cl)N=C1Cl |
MDL No. : | MFCD11036367 |
InChI Key : | FWEVVZQDRPWAND-UHFFFAOYSA-N |
Pubchem ID : | 12259932 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 40.38 |
TPSA ? Topological Polar Surface Area: Calculated from |
33.12 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.65 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.89 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.73 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.09 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.48 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.77 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.51 |
Solubility | 0.547 mg/ml ; 0.00307 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.21 |
Solubility | 1.1 mg/ml ; 0.00619 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.08 |
Solubility | 0.146 mg/ml ; 0.000822 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.04 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.66 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With Dess-Martin periodane; In dichloromethane; at 20 - 26℃; for 2.0h; | To a solution of <strong>[55304-90-0](2,6-dichloropyridin-3-yl)methanol</strong> (1.0 g, 5.62 mmol) in CH2C12 (10 ml) was added Dess-Martin reagent (4.8 g, 11.24 mmol) at 26C. After addition the mixture was stirred at room temperature for 2 h. Once the reaction was complete, the mixture was then quenched by adding 5% aqueous Na2S203 and stirred for 30 min. The resulting mixture was extracted with CH2C12 (2x30 ml). The combined organic layers were washed with saturated Na2S203 solution (50 ml), brine (30 ml), dried over Na2S04 and concentrated to give the title compound which was used in next step without further purification. (800 mg, Yield 80%). 1H NMR (400MHz, CDC13): 10.38 (s, 1H), 8.19 (d, J=8.0 Hz, 1H), 7.44 (d, J=8.0 Hz, 1H). |
66% | With pyridinium chlorochromate; In dichloromethane; for 2.0h; | Dissolve <strong>[55304-90-0](2,6-dichloropyridin-3-yl)-methanol</strong> (876 mg, 4.92 mmol) in dichloromethane (20.mL). Add pyridium chlorochromate (2.12 g, 9.84 mmol). Stir for 2 hours. Add diethyl ether and stir for 20 minutes. Filter the mixture through a pad of Celite and silica gel and concentrate to give 2,6-dichloropyridine-3-carbaldehyde (575 mg, 66%): 1H NMR (400 MHz5 CDCl3) delta 10.39 (s, IH)5 8.18 (d, IH, J = 8.0 Hz)5 7.43 (d, IH, J = 8.0 Hz). |
With manganese dioxide; In benzene; | 180 g (1.01 mols) of <strong>[55304-90-0]2,6-dichloro-3-hydroxymethylpyridine</strong> are then heated under reflux for 2 hours with 600 g (6.9 mols) of manganese dioxide in 4 l of benzene. The reaction mixture is filtered while still hot and the benzene is evaporated. After drying the residue in a vacuum drying cabinet, 2,6-dichloropyridine-3-aldehyde is obtained. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 2 - Synthesis of Phantasmidine (Figure 2) 2,6-Dichloropyridine-3-pyridinemethanol (9a). A solution of 2,6- dichloropyridine-3-carboxaldehyde (8a) (950 mg, 5.40 mmol) in MeOH (10 mL) was treated with NaBH4 (205 mg, 5.40 mmol) in one portion at 0 C. The reaction was stirred at 0 C for 30 min. 10% aqueous hydrochloric acid was added dropwise to the reaction until pH 1 was reached and MeOH was removed under vacuum. The residue was extracted with CH2CI2 (50 mL x 3). The combined CH2CI2 layers were washed with H20 (50 mL) and brine (50 mL), dried (Na2S04), and concentrated to give 952 mg (99%) of 9a as a white solid, which was used directly without further purification. A small portion of crude 9a was recrystallized to give an analytical sample: mp 73-74 C (lit. 62-64 C); 1H NMR 7.88 (d, 1, J = 8.0), 7.33 (d, 1, J = 8.0), 4.78 (br s, 2), 2.21 (br s, 1, wm = 16, OH); 13C NMR 148.8, 147.8, 139.1, 133.8, 123.2, 60.9; IR 3369. The data are identical to those previously reported. | ||
3.01 g | With methanol; sodium tetrahydroborate; at 20℃; for 0.5h; | [1037] NaBH4 (808 mg, 21.3 mmol) was added to a solution of 514-1 (3.10 g, 17.7 mmol) in MeOH (22 niL), which had been pre-cooled to 0 C. The mixture was allowed to reach r.t. and stirring was prolonged for 30 mins. 1 M aq. HC1 solution was added, and the organic solvent was removed under reduced pressure. The aqueous phase was extracted with DCM (3x). The combined organic portions were dried with and filtered. The volatiles were removed under reduced pressure to afford 514-2 (3.01 g). UPLC/MS(ES+): m/z 178.00 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dmap; triethylamine; In dichloromethane; at 0 - 20℃; | Synthesis of 2,6-dichloropyridin-3-yl)methyl toluenesulphonateTo a stirred solution of the compound 2,6-dichloropyridin-3-yl)methanol (0.4g, 2.25mmol), 4-dimethylaminopyridine (0.028g, 0.225 minol) and triethylamine (0.62ml, 4.5mmol) in dichloromethane (20ml) was added p-toluene sulphonyl chloride (0.64g, 3.75 mmol) portion wise at 0-5C and stirred the reaction mixture at room temperature for overnight. The mixture was diluted with dichloromethane, washed with water and brine, dried over anhydrous sodium sulphate and concentrated under reduced pressure to furnish the title compound. Yield: 0.725g. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | Dissolve 2,6-dichloronicotinic acid (1000 mg, 5.21 mmol) in anhydrous tetrahydrofuran (5 niL). Cool to 0 0C. Add borane-tetrahydrofuran complex (7.82 mL5 7.82 mmol, 1.0 M in tetrahydrofuran) slowly. Stir the mixture at room temperature overnight. Add water (1 niL) and potassium carbonate, stir for 2 hours, filter and concentrate to give a residue. Chromatograph the residue on silica gel eluting with 10:90 to 20:80 ethyl acetate:hexanes to give (2,6-dichloropyridin-3-yl)-methanol (876 mg, 94%). 1H NMR (400 MHz5 MeOH-d4) delta 7.96 (d, IH, J = 8.0 Hz), 7.45 (d, IH, J = 8.0 Hz), 4.64 (s, 2H). | |
80% | With sodium tetrahydroborate; boron trifluoride diethyl etherate; In tetrahydrofuran; at 0 - 20℃; for 10.0h; | To a solution of 2,6-dichloronicotinic acid (1 g, 5.2 mmol) in THF (10 mL) was added NaBH4 (591 mg, 15.6 mmol) at 0C. The mixture was stirred for 30 min and then BF3.OEt2 (2.2g, 15.6 mmol) was added drop wise at 0C. After addition was complete, the mixture was stirred at room temperature for 10 hr, until the reaction was completed. The reaction mixture was quenched by the addition of saturated NH4C1 solution (50 mL) and extracted with ethyl acetate (3x30 mL). The combined organic layers were washed with brine (30 mL), dried over Na2S04 and concentrated to give the desired product as a white solid which was used in next step without further purification. (820 mg, Yield 80%). |
Synthesis of 2,6-dichloropyridin-3-yl)methanolTo a solution of the compound 2,6-dichloronicotinic acid (0.5g, 2.6mmol) in tetrahydrofuran (10ml) at 00C was added sodium borohydride (0.29g, 7.8mmol) portion wise and stirred the reaction mixture at room temperature for 30 minutes. The resulting reaction mixture was again cooled to 0C followed by the addition of etheral solution of boron trifmoride (1.1 ml, 7.8 mmole) dropwise and stirred the mixture at room temperature for overnight. The reaction mixture was quenched with aqueous sodium hydroxide (IN) and the solvent was evaporated under reduced pressure to furnish the title compound. The residue thus obtained was diluted with water and extracted with ethyl acetate. The organic layer was washed with water and brine, dried over anhydrous sodium sulphate and concentrated under reduced pressure to furnish the title compound. Yield: 0.44g. |
In tetrahydrofuran; methanol; | PREPARATION EXAMPLE 23-1 Lithium aluminum hydride (1.78 g) was suspended in dry tetrahydrofuran (10 ml), and 2,6-dichloronicotinic acid was added under ice-cooling at an inside temperature of not more than 10 C. The mixture was stirred under ice-cooling for 1 hr and 28% aqueous amonia was added dropwise to the reaction mixture until foams disappeared. Methanol was added and the mixture was stirred at room temperature for 3 hr, and filtered through celite. The mother liquor was concentrated and the residue was applied to flash silica gel column chromatography (silica gel, 200 ml) and eluted with chloroform:ethyl acetate=8:1 to give 2,6-dichloro-3-hydroxymethylpyridine as colorless crystals (2.89 g). 1H-NMR (CDCl3): 2.11 (1H, t, J=7 Hz), 4.77 (2H, d, J=7 Hz), 7.32 (1H, d, J=8 Hz), 7.87 (1H, d, J=8 Hz). MASS (ESI): m/z 176 (M-1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In methanol; | 260 g (1.18 mols) of this 2,6-dichloro-3-acetoxymethylpyridine, 520 ml (2 mols) of aqueous 2N sodium hydroxide solution and 520 ml of methanol are heated under reflux for 2 hours. The methanol is then removed on a rotary evaporator and the residual water phase is extracted by shaking with diethyl ether. After drying the organic phase over magnesium sulphate and concentrating the solution, crude crystalline 2,6-dichloro-3-hydroxymethylpyridine is obtained, which can be purified by recrystallisation from a mixture of cyclohexane/diethyl ether. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1H-imidazole; In N,N-dimethyl-formamide; at 0 - 20℃; for 1.0h; | 3 -( { [tert-butyl(dimethyl)silyl] oxy } methyl)-2,6-dichloropyridineTo a solution of (2,6-dichloropyridm-3-yl)methanol (from Step A above, 6.3g) in DMF was added imidazole (3.06 g) and t-butyldimethylsilyl chloride (6.02 g) at O0C. The mixture was warmed to room temperature and stirred for Ih before poured into water. The solution was extracted with ethyl acetate. The organic layer was washed with water (5X)5 brine, dried over MgStheta4 and concentrated. The residue was purified by silica gel (hexanes/ethyl acetate) to give the title compound (8.7 g).1HNMR (CDCl3) delta : 7.89 ( d, 1 H), 7.32 (d, 1 H), 4.74 (s, 2 H)5 0.98 (s, 9 H)5 0.16 (s, 6 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(2,6-dichloropyridin-3-yl)methanolTo a solution of 2,6-dichloronicotinic acid (1Og) in MeOH (300 mL) was added oxalyl chloride (5.5 mL) dropwise at O0C. The mixture was heated to 6O0C for a couple of hours until reaction complete. Upon concentration, the residue was dissolved in ether and added lithium aluminum hydride (2.3 g) slowly at O0C. The reaction was stirred at O0C for Ih and added water (2.3 mL) dropwise to quench excess lithium aluminum hydride. The resulting mixture was added 15% NaOH (2.3 mL) slowly, water (6.9 mL) and stirred at O0C for an additional Ih. The slush solution was filtered through celite and washed with ether. The filtrate was concentrated to give the title compound (6.5 g).1H NMR (CDCl3) delta : 7.90 ( d, 1 H)5 7.33 (d, 1 H), 4.79 (s, 2 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With thionyl chloride;N,N-dimethyl-formamide; In dichloromethane; at 0 - 25℃; for 6.0h;Inert atmosphere; | 2,6-Dichloro-3-pyridineacetonitrile (11a). A solution of 9a (848 mg, 4.76 mmol) in 5 mL of CH2C12 was treated with 5 mL of SOCl2 and 3 drops of DMF at 0 C. The resulting solution was stirred at 0 C for 1 h and then warmed to 25 C and stirred for another 5 h. The reaction was concentrated. The residue was dissolved in 50 mL of CH2CI2and the solution was washed with saturated NaHC03 and brine, dried (Na2S04), and concentrated to give 1.02 g of crude 2,6-dichloro-3-chloromethylpyridine (10a), which was used without further purification. A small portion of crude 10a was recrystallized to give an analytical sample: mp 83-84 C; 1H NMR 7.82 (d, 1, J = 8.0), 7.33 (d, 1, J = 8.0), 4.66 (s, 2); 13C NMR 150.1, 149.5, 141.2, 130.6, 123.5, 41.8; IR 1580, 1552, 1426, 1353. The data are identical to those previously reported. A solution of crude 10a dissolved in 20 mL 9: 1 EtOH/H20 was treated with NaCN (466 mg, 9.52 mmol). The resulting solution was heated at 80 C for 4 h. The reaction was cooled and diluted with H20 (50 mL), and extracted with CH2C12 (3 x 50 mL). The combined organic layers were washed with H20 and brine and dried (Na2S04). Concentration gave 952 mg of crude 11a. Flash chromatography (5: 1 hexanes/EtOAc) gave 572 mg (64%) of pure 11a: mp 90-91 C (lit. 80-82 C, lit. 89-91 C ); 1H NMR 7.86 (d, 1, J = 8.0), 7.38 (d, 1, J = 8.0), 3.85 (s, 2); 13C NMR 150.4, 149.3, 140.2, 124.0, 123.7, 115.4, 21.4; IR 2265. The 1H NMR data are identical to those previously reported. |
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