Structure of 58602-02-1
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CAS No. : | 58602-02-1 |
Formula : | C5H2F2N2O2 |
M.W : | 160.08 |
SMILES Code : | O=[N+](C1=CC=C(F)N=C1F)[O-] |
MDL No. : | MFCD11044323 |
InChI Key : | GFDZKTFHLUFNPC-UHFFFAOYSA-N |
Pubchem ID : | 11389546 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 32.98 |
TPSA ? Topological Polar Surface Area: Calculated from |
58.71 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.9 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.55 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.11 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.95 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.15 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.13 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.15 |
Solubility | 1.14 mg/ml ; 0.00713 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.39 |
Solubility | 0.648 mg/ml ; 0.00405 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.95 |
Solubility | 1.78 mg/ml ; 0.0111 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.18 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
3.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.13 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With cesium fluoride In dimethyl sulfoxide at 90℃; for 0.5 h; | General procedure: To asolution of 3-bromo-2,6-dichloropyridine (4.70 g, 20.7 mmol) in DMSO (103 ml)was added cesium fluoride (12.6 g, 82.9 mmol) at room temperature. The mixturewas stirred at 80 °C under air for 8 h. The mixture was poured into water atroom temperature and extracted with Et2O. The organic layer wasseparated, washed with water and brine, dried over Na2SO4and concentrated in vacuo. (400 Torr, 40 °C). The residue was purified bycolumn chromatography (silica gel, eluted with EtOAc in hexane) to give 3-bromo-2,6-difluoropyridine (3B) (2.58 g, 64percent) as colorless oil. 1H NMR (CDCl3)δ: 6.79 1H,dd, J = 8.3, 3.0 Hz), 8.03 (1H, ddd, J = 8.4, 8.4 7.0 Hz). 19F NMR(CDCl3) δ: -69.3 Hz, -63.8 Hz. The compound 4B-8B were prepared in a manner similarto that described for 3B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In sulfuric acid; | STEP A: 2,6-difluoro-3-nitropyridine To a stirred solution of 20 g. of 2,6-difluoropyridine in 100 ml. of concentrated sulfuric acid at about 20 C., was added 75 ml. of 90% fuming nitric acid over 20 minutes. The mixture was kept at room temperature overnight, warmed to 35 C. over 15 minutes and held at this temperature for 10 minutes. The solution was cooled and poured into ice. The oil was extracted with 400 ml. of ether and the ether extract was washed with bicarbonate solution until all of the acid was neutralized. The ether was dried, evaporated and the residue was distilled at 0.1 mm. The only fraction came over at 50 C. | |
With dihydrogen peroxide; nitric acid; at 0 - 60℃; for 3h; | To a solution of 2,6-difluoropyridine (5.00 g, 43.4 mmol) in Conc.HN03 (36.3 mL, 869 mmol) was added concentrated H2S04 (34.7 mL, 652 mmol) slowly at 0 C and the reaction mixture was heated at 60 C for 3h. Progress of the reaction was monitored by TLC. After completion, the reaction mixture was cooled at room temperature, poured into crushed ice (120 mL) and extracted with DCM (2 c 100 mL). The organic layer was separated, washed with an aqueous saturated NaHC03 solution (120 mL), dried over anhydrous Na2S04 and concentrated under vacuum to afford 2,6-difluoro-3-nitropyridine X-12a (3.20 g crude) as a yellow oil. (0877) This compound was used as such for the next reaction without further purification. 1 H NMR (400 MHz, DMSO-cfe) d 7.47 (dd, J=8.80, 2.45 Hz, 1 H) 8.91 -9.00 (m, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With cesium fluoride; In dimethyl sulfoxide; at 90℃; for 0.5h; | General procedure: To asolution of 3-bromo-2,6-dichloropyridine (4.70 g, 20.7 mmol) in DMSO (103 ml)was added cesium fluoride (12.6 g, 82.9 mmol) at room temperature. The mixturewas stirred at 80 C under air for 8 h. The mixture was poured into water atroom temperature and extracted with Et2O. The organic layer wasseparated, washed with water and brine, dried over Na2SO4and concentrated in vacuo. (400 Torr, 40 C). The residue was purified bycolumn chromatography (silica gel, eluted with EtOAc in hexane) to give 3-bromo-2,6-difluoropyridine (3B) (2.58 g, 64%) as colorless oil. 1H NMR (CDCl3)delta: 6.79 1H,dd, J = 8.3, 3.0 Hz), 8.03 (1H, ddd, J = 8.4, 8.4 7.0 Hz). 19F NMR(CDCl3) delta: -69.3 Hz, -63.8 Hz. The compound 4B-8B were prepared in a manner similarto that described for 3B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With nitric acid; | a 2,6-Difluoro-3-nitropyridine To a mixture of concentrated sulphuric acid (600 mL) and fuming nitric acid (90%, 400 mL) in a ice-bath (internal temperature maintained at 5-10 C.) was added drop-wise 2,6-difluoropyridine (200 g, 1.74 mol). The resulting mixture was stirred overnight at room temperature. The mixture was poured slowly into 3 kg of ice and extracted with Et2O (2*2 L). The combined organic layers were washed with aqueous 1.5 N NaOH (2*1 L), then with aqueous saturated NaHCO3 (400 mL) or until pH is around 8-9. The organic layers were dried over MgSO4, filtrated and concentrated under reduced pressure until constant weight (to remove unreacted 2,6-difluoropyridine: 10-12%). The title compound was obtained as a yellow liquid (207.3 g, 74% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | In tetrahydrofuran; hexane; ethyl acetate; | b 2-(Ethylamino)-6-fluoro-3-nitropyridine To a solution of <strong>[58602-02-1]2,6-difluoro-3-nitropyridine</strong> (45.7 g, 285 mmol) in THF (500 mL) at -40 C. was added drop-wise a solution of ethylamine (25.7 g, 570 mmol) in THF (250 mL). After 30 min, the reaction mixture was concentrated under reduced pressure and the residue was dissolved in EtOAc. The organic phase was washed with brine, dried (MgSO4), filtered and concentrated. The resulting yellow solid was purified by flash chromatography (15% EtOAc in hexane) to give the title compound (43.2 g, 82% yield) as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In acetonitrile; | Step A <strong>[58602-02-1]2,6-difluoro-3-nitropyridine</strong> (14.68g,91.8mmol) was added to a mixture of DL-alanine ethyl ester hydrochloride (14.09g 92mmol) and potassium carbonate (25.3g, 183mmol) in acetonitrile (200ml) and the mixture stirred for 2 hours at room temperature. The reaction mixture was poured into water and extracted several times with ethyl acetate; the combined extracts were dried (MgSO4) and the solvent removed in vacuo leaving a viscous orange-yellow residue which solidified on standing. The solid was triturated with hexane and the solvent removed from the hexane soluble fraction leaving ethyl DL-2-[6-fluoro-3-nitropyridyl-2-amino]propionate as a yellow solid m.p. 49-51 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydrogencarbonate; In ethanol; water; | STEP B: 6-Fluoro-2-(3,4-methylenedioxyanilino)-3-nitropyridine In 75 ml. of ethanol was dissolved 3.2 g. (0.002 mole) of <strong>[58602-02-1]2,6-difluoro-3-nitropyridine</strong> followed by 1.68 g. (0.02 mole) of sodium bicarbonate. To this stirred mixture, was added a solution of 2.74 g. (0.02 mole) of 3,4-(methylenedioxy) aniline in 50 ml. of ethanol dropwise over 45 minutes at room temperature. After one hour, 100 ml. of water was added and the deep-red crystalline solid product was collected. A small amount was crystallized from ethanol and melted at 161-162 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dimethyl sulfoxide; triethylamine; | EXAMPLE 4 1-(6-Fluoro-3-nitro-2-pyridinyl)-4-carbobenzoxypiperazine-2-carboxylic acid In a similar procedure to that described in Example 1, from 6.0 g. of <strong>[58602-02-1]2,6-difluoro-3-nitropyridine</strong>, 9.0 g. of 4-carbobenzoxypiperazine-2-carboxylic acid, hydrochloride, 20 ml. of triethylamine and 150 ml. of dimethyl sulfoxide, there is obtained 14 g. of the title product as a viscous orange glass. Thin layer chromatographic analysis of this material shows essentially one spot. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With trifluoromethanesulfonic acid anhydride; In dichloromethane; | Synthesis of 2,6-difluoro-3-nitropyridine Tetramethylammonium nitride (4.5 g) was suspended in dichloromethane (10 ml), and a solution of trifluoromethanesulfonic anhydride (5.56 ml) in dichloromethane (5 ml) was added dropwise at room temperature. After stirring at room temperature for 1.5 hours, a solution of 2,6-difluoropyridine (2 ml) in dichloromethane (5 ml) was added at room temperature, and the reaction solution was heated under reflux overnight. After leaving to cool, the reaction solution was poured into an ice-cooled saturated sodium bicarbonate solution. Dichloromethane was added and the organic layer was separated. The resulting organic layer was washed with brine and then dried over anhydrous sodium sulfate. The drying agent was separated by filtration and the organic layer was concentrated under reduced pressure to obtain the title compound (3.84 g). The property values of the compound are as follows. 1H-NMR (CDCl3) delta (ppm): 7.03-7.07 (m, 1H), 8.66-8.73 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
47% | With potassium carbonate; In dimethyl sulfoxide; at 20℃; for 0.5h; | General procedure: To asolution of 3-chloro-2,6-difluoropyridine (449 mg, 3.00 mmol) and K2CO3(829 mg, 6.00 mmol) in DMSO (15 mL) was added benzylamine(338 mg, 3.15 mmol) at room temperature. The mixture was stirred at roomtemperature under air for 2 h. The mixture was poured into water at roomtemperature and extracted with EtOAc. The organic layer was separated, washedwith water and brine, dried over MgSO4 and concentrated in vacuo.The residue was purified by column chromatography (silica gel, eluted withEtOAc in hexane) to give N-benzyl-3-chloro-6-fluoropyridin-2-amine(2D) (468 mg, 66 %) and N-benzyl-5-chloro-6-fluoropyridin-2-amine (2E) (63.0 mg, 8.9 %). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | With potassium carbonate; In dimethyl sulfoxide; for 0.5h; | General procedure: 3-[2-(trimethylsilyl)ethoxy]methyl}-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one (8) (5.00 g, 18.8 mmol) and 2,3,6-trifluoropyridine (1) (3.51 g, 26.4 mmol) in DMSO (100 ml) was added K2CO3 (5.21 g, 37.7 mmol) at room temperature. The mixture was stirred at 130 C for 30 min. The mixture was quenched with water at room temperature and extracted with EtOAc. The organic layer was separated, washed with water and brine, dried over MgSO4 and concentrated in vacuo. The residue was purified by column chromatography (silica gel, eluted with EtOAc in hexane) to give 1-(3,6-difluoropyridin-2-yl)-3-[2-(trimethylsilyl)ethoxy]methyl}-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one (12) (7.04 g, 18.6 mmol, 99 %) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43%; 35% | With caesium carbonate; In N,N-dimethyl-formamide; at 70℃; for 14h; | General procedure: 2-Halo-3-nitropyridine (1 eq, 7.3mmol) in DMF (6mL) was treated with 2-isopropylphenol (1 eq, 7.3mmol) and Cs2CO3 (1.5 eq, 10.9mmol) and heated at 70C for 14h. Afterwards, the reaction mixture was cooled to room temperature, and DMF was evaporated. The residue was dissolved in ethyl acetate (EA, 20mL) and washed with 5% LiCl aq sol. (3×7mL) and brine (3×7mL). Drying (MgSO4) and removal of solvent afforded a brown solid which was recrystallized from ethanol to afford the corresponding ether as yellow needles. |
Tags: 58602-02-1 synthesis path| 58602-02-1 SDS| 58602-02-1 COA| 58602-02-1 purity| 58602-02-1 application| 58602-02-1 NMR| 58602-02-1 COA| 58602-02-1 structure
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H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
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