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CAS No. : | 591-55-9 | MDL No. : | MFCD01529870 |
Formula : | C4H5N3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | FVLAYJRLBLHIPV-UHFFFAOYSA-N |
M.W : | 95.10 | Pubchem ID : | 344373 |
Synonyms : |
|
Num. heavy atoms : | 7 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 0 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 26.44 |
TPSA : | 51.8 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.46 cm/s |
Log Po/w (iLOGP) : | 0.99 |
Log Po/w (XLOGP3) : | -0.81 |
Log Po/w (WLOGP) : | 0.07 |
Log Po/w (MLOGP) : | -1.13 |
Log Po/w (SILICOS-IT) : | 0.38 |
Consensus Log Po/w : | -0.1 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 2.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -0.55 |
Solubility : | 26.6 mg/ml ; 0.279 mol/l |
Class : | Very soluble |
Log S (Ali) : | 0.2 |
Solubility : | 151.0 mg/ml ; 1.59 mol/l |
Class : | Highly soluble |
Log S (SILICOS-IT) : | -1.21 |
Solubility : | 5.93 mg/ml ; 0.0624 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.06 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With sodium hydroxide; hydrogen In diethyl ether; water at 20℃; for 20 h; | A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10percent on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95percent yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35percent yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10percent on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67percent). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51percent) was obtained, which was used without further purification. |
67% | With ammonium formate In methanol at 0℃; | A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10percent on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95percent yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35percent yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10percent on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67percent). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51percent) was obtained, which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31.9% | With sodium hydroxide; hydrogen In diethyl ether; water at 20℃; for 72 h; | Example 142; 4-(3-Phenyl-1,2,4-thiadiazol-5-yl)-N-pyrimidin-5-ylpiperazine-1-carboxamide; (1) Pyrimidine-5-amine; A mixture of 5-amino-4,6-dichloropyrimidine (2.00 g, 12.2 mmol), ether (240 ml), sodium hydroxide (8 g), water (32 ml) and 10percent palladium-carbon (160 mg) was stirred under a hydrogen atmosphere at room temperature for 3 days, insolubles were filtered off and an organic layer was separated. The organic layer was dried over anhydrous magnesium sulfate and the solvent was distilled off under reduced pressure to obtain the desired product (370 mg, 31.9percent) as a solid. 1H-NMR (CDCl3) δ; 3.75 (2H, br s), 8.21 (2H, s), 8.66 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | Stage #1: With benzyltrimethylazanium tribroman-2-uide In methanol; dichloromethane at 0℃; for 0.416667 h; Stage #2: at 20℃; for 1.5 h; |
A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10percent on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95percent yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35percent yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10percent on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67percent). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51percent) was obtained, which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium tert-butylate; In ice-water; dimethyl sulfoxide; | REFERENCE EXAMPLE 10 To 5 ml of dimethyl sulfoxide (DMSO) containing 0.34 g of potassium tert-butoxide was added 0.29 g of 5-aminopyrimidine, followed by stirring at room temperature for about 15 minutes. To the reaction mixture was added dropwise 1 ml of a DMSO solution containing 0.33 g of p-fluorobenzotrifluoride, followed by heating at 60° C. for about 40 minutes. The reaction mixture was allowed to cool and poured into 150 ml of ice-water. The thus formed white crystals were collected by filtration and dried to obtain 0.17 g of 5-(4-trifluoromethylphenyl)aminopyrimidine. Mass Spectrum (m/z): 239 (M+) NMR Spectrum (DMSO-d6, TMS internal standard) delta: 7.25 (2 H, d, J=8 Hz), 7.59 (2 H, d, J=8 Hz), 8.68 (2 H, s), 8.77 (1 H, s), 9.02 (1 H, s) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
10% | With pyridine; In acetonitrile; at 0℃; for 12h; | To a solution of pimidin-5-amine (0.500 g, 5.260 mmol) and pidine (0.630 g, 12.500 mmol) in acetonitrile (10 mL) was added phenylchloroformate (0.720 mL, 5.790 mmol) at 0 C. The reaction mixture was stirred for 12 h. The reaction mixture was diluted with water (50 mL) and extracted with ethyl acetate (2 x 50 mL). The combined organic layer was dried over sodium sulfate and evaporated under reduced pressure to give a residue.The residue was purified by column chromatography (ethyl acetate/hexanes = 60/40) to give the titled compound (0.100 g, 10 %) as a solid. LCMS: m/z 216.2 [M+ H] . |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
13.5% | With sodium hydride; In dimethyl sulfoxide; at 50 - 60℃; for 4 - 6h; | Preparation 4A; N'-(Dyrimidin-5-ylV4-MH-pyiToloF2.3-b1pyridin-1-yl)benzamidine; Sodium hydride oil dispersion (6.85 g of 60%) was added to a solution of 4-(1H- pyrrolo[2,3-b]pyridin-1-yl)benzonitrile (25.0 g, 114 mmol) and <strong>[591-55-9]5-aminopyrimidine</strong> (10.8 g, 114 mmol, prepared as described by Philips et al., Can. J. Chem 1999, 77, 216-222) in anhydrous dimethylsulfoxide (200 mL), and the resulting suspension was heated at 50-60 0C for 4-6 h. The cooled mixture was poured onto ice (1 kg), and the yellow suspension stirred with 150 mL EtOAc and 150 mL hexanes for 15 min and filtered. The solid was washed with water (1L in 3 portions), and dried at 780C in vacuo overnight. The dried solid (30.0 g) was suspended in 400 mL 1N HCI and the resulting aqueous solution extracted with EtOAc (5 x 125 mL). DCM (100 mL) and aqueous NaOH (110 mL of 6N were added to the aqueous layer giving a flocculent suspension which was filtered and the solid washed with water (2 x 200 mL) and dried at 78 0C and 0.1 mm giving the title substance (22.7 g). 1H NMR (CDCI3) delta 8.78 (br, 1H), 8.33 (m, 3H), 8.2-8.0 (m, 6H), 7.21 (dd, 1H, J = 4.6, 7.9), 6.95 (br, 2H), 6.75 (d, 1H1 J = 3.7). MS (AP+) m/e 315 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With sodium hydroxide; hydrogen;palladium 10% on activated carbon; In diethyl ether; water; at 20℃; under 2585.81 Torr; for 20h; | A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10% on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95% yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35% yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10% on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67%). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51%) was obtained, which was used without further purification. |
67% | With ammonium formate;palladium 10% on activated carbon; In methanol; at 0℃; | A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10% on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95% yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35% yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10% on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67%). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51%) was obtained, which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | A solution of 5-amino-4, 6-DICHLOROPYRIMIDINE (5.0 g, 30.5 mmol) in 250 mL of diethyl ether was treated with sodium hydroxide solution (20.0 g, 0.50 mol, in 60 ML of water) and palladium (10% on carbon, 400 mg). The mixture was shaken at room temperature on a Parr shaker under 50 psi of hydrogen gas for 20 hours. The mixture was filtered through CELTES filter aid. The phases were separated and the aqueous layer was extracted with three 100 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo. Crystallization of the crude from ethyl acetate gave pyrimidin-5-ylamine as white crystalline solid (2.8 g; 95% yield). Bromination of pyrimidin-5-ylamine was performed in the same manner as for the preparation of 4-AMINO-3-BROMO-2, 6-dimethylpyridine. The resulting crude product (300 mg, 35% yield) was deemed pure and used without further purification. Alternatively, 5-amino-4-bromopyrimidine can be synthesized according to the following procedure: A solution of 4,6-dichloro-5-aminopyrimidine (21 g, 128 mmol) in 250 mL of MeOH was sequentially treated with ammonium formate (45 g, 714 mmol) and palladium (10% on charcoal, 1 g, 0.943 mmol) at 0 C. The mixture was stirred overnight at room temperature and was filtered through CELITEO filter aid. The filtrate was concentrated to give a yellow solid. 100 mL of water and 250 mL of ethyl acetate were added. The organic phase was separated and the aqueous layer was extracted with eight 250 mL portions of ethyl acetate. The combined organic layers were dried over magnesium sulfate, filtered, and concentrated in vacuo to yield off-white crystals (8. 1 g, 67%). A stirred solution OF 5-AMINOPYRIMIDINE (3.0 g, 31.5 mmol) in 150 mL of dichlromethane and 30 mL of methanol was cooled to 0 C. Benzyltrimethylammonium tribromide (13.5 g, 34.7 mmol) was added in portions over a period of 10 minutes. Stirring was continued at 0 C for 15 minutes and at room temperature for 90 minutes. The reaction mixture was treated with aqueous sodium bicarbonate solution until the solution was pH 8. The organic layer was separated and aqueous layer was extracted with three 30 mL portions of ethyl acetate. The combined organic extracts were dried over sodium sulfate, filtered, and concentrated in vacuo. An off-white solid (2. 8 g; 51%) was obtained, which was used without further purification. | |
With benzyltrimethylazanium tribroman-2-uide; In methanol; dichloromethane; at 0 - 20℃; | Benzyltrimethylammonium tribromide (1.1 eq, 4.5 g) was added portionwised to a stirred solution of 5-aminopyrimidine (1 eq, 1 g) in DCM (50 mL) and MeOH (10 mL) at 0C. The mixture was warmed up to room temperature and stirred for 90 min. Aq. sat. NaHCC>3 solution was added (pH ~8), the organic was separated and the aqueous extracted with EtOAc (3x). The combined organics were dried and concentrated. Purification by silica chromatography (EtOAc/cyclohexane; 0:100 to 50:50) gave the desired compound |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | In benzene; for 1h;Heating / reflux; | A mixture of 5-ethyl-6-oxo-6, 7-dihydro-5H-1-oxa-s-indacene-7-carboxylic acid ethyl ester (150 mg. 0.6 mmol) and <strong>[591-55-9]5-aminopyrimidine</strong> (52 mg, 0.6 mmol.) in benzene (40 ml) was refluxed over a Dean-Stark trap for 1 hour. The mixture was cooled to room temperature, diluted with hexanes and the resulting precipitate filtered. The filtrant was dissolved in ethyl acetate (75 ml) and methanol (3 mi) and washed with 1N hydrochloric acid (1 X 5 ml), brine (1 X 5 ml), dried (sodium sulfate) then concentrated in vacuo. The residue was dissolved in methylene chloride (2 ml), diluted with diethyl ether (5 mi) and triturated with hexanes to give 54 mg 5-ethyl-6- oxo-6, 7-dihydro-5H-1-oxa-5-aza-s-indacene-7-carboxylic acid pyrimidin-5-ylamide (31%) as an orange solid, mp 100-3 C.'H-NMR (CDCI3) : No. 8.9 (s, 1H), 8.6 (d, 1H), 8.1 (d, 1H), 7.9 (s, 1H), 7.7 (s, 1H), 7.1 (s, 1H), 6.8 (s, 1H), 4.5 (s, 1H), 3.9 (q, 2H), 1.3 (t, 3H). MS (m/z, %): 321 (M+-1, 100). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
22% | With caesium carbonate;palladium diacetate; 2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; In toluene; at 120℃;sealed tube; | A mixture of 11 (0.269 g, 0.613 mmol) and cesium carbonate (0.200 g, 0.613 mmol) in toluene (40 mL) was degassed and treated with <strong>[591-55-9]5-aminopyrimidine</strong> (0.058 g, 0.613 mmol), palladium(II) acetate (0.014 g, 0.061 mmol), and racemic-2,2'-bis(diphenylphosphino)-1,1'-binaphthyl (0.057 g, 0.092 mmol). The reaction was degassed again and heated at 120 C. in a sealed tube overnight. The reaction was then cooled to room temperature and concentrated. Purification of the residue by flash chromatography (silica, 96:4 methylene chloride/methanol) and then by preparative HPLC (Method 3) afforded the title compound 0.060 g (22%) as an off-white solid: Rf 0.32 (95:5 methylene chloride/methanol); mp 88-90 C.; 1H NMR (300 MHz, CD3OD) delta 8.56 (s, 1H), 8.52 (s, 2H), 7.46-7.13 (m, 9H), 6.32 (d, J=3.6 Hz, 1H), 6.25 (d, J=7.1 Hz, 1H), 6.24 (d, J=3.6 Hz, 1H), 5.65 (d, J=7.1 Hz, 1H), 4.94 (s, 2H); IR (ATR) 3472, 3316, 3041, 1611, 1571, 1528, 1460, 1417, 1315, 1159, 754, 718 cm-1; ESI MS m/z 453 [C26H21ClN6+H]+; HPLC (Method 1)>99% (AUC), tR=11.96 min. Anal. Calcd for C26H21ClN6.1.5H2O: C, 65.06; H, 5.04; N, 17.51. Found: C, 64.83; H, 4.32; N, 16.97 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a suspension of the resulting acid chloride compound and 5-aminopyrimidine (84.0 mg) in methylene chloride (5 ml) is added dimethylaminopyridine (144 mg) at room temperature, and the mixture is stirred at room temperature. To the mixture is poured water, and the mixture is extracted with ethyl acetate. The extract is washed with a saturated aqueous sodium hydrogen carbonate solution, water and brine, dried over sodium sulfate, and concentrated. The residue is triturated with a mixture of ethyl acetate and n-hexane to give 4-(3-chloro-4-methoxybenzylamino)-5-(5-pyrimidinylaminocarbonyl)-2-methylthiopyrimidine (216 mg) as pale yellow needles, m.p. 238-240 C., IR (Nujol): 3251, 1666 cm-1, MS (m/z): 416 (M+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With carbon disulfide; triethylamine; In ethanol; | 1. PREPARATION EXAMPLES 2-(5-Pyrimidylimino)-1,3-dithietane (Compound 1.1) 23.4 g (0.232 mol) of triethylamine are added dropwise to a ready-prepared solution of 20 g (0.211 mol) of <strong>[591-55-9]5-aminopyrimidine</strong> and 12.7 ml (0.211 mol) of carbon disulfide in 50 ml of ethyl alcohol. The reaction mixture is then stirred for 15 hours at 70 C. and the resulting suspension is filtered off. Drying yields 10 g of carbon disulfide adduct. The filtrate is concentrated by evaporation, yielding a further 27 g of the intermediate as the residue. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With trimethylsilylazide; In methanol; ethyl acetate; | STR21 An ethyl acetate (60 ml) solution of <strong>[591-55-9]5-aminopyrimidine</strong> (2.85 g) was added dropwise to a mixture of diphosgene (6.0 g) and ethyl acetate (100 ml) under cooling with ice. After heating under refluxing for 6 hours, the solvent was distilled off under reduced pressure. The obtained residue and trimethylsilyl azide (11 g) were mixed and the mixture was heated under refluxing for 30 hours. The excess trimethylsilyl azide was distilled off under reduced pressure. Methanol was then added to the residue and the mixture was stirred. Thereafter, methanol was distilled off and the residue was subjected to silica gel column chromatography (eluant: chloroform/ethanol=15/1) to obtain 1-(5-pyrimidyl)-5(4H)-tetrazolinone (3.2 g). mp. 211-213 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In methanol; | Example 1(c) Preparation of N-(4 -chlorobenzylidene)-<strong>[591-55-9]5-aminopyrimidine</strong> (compound 3.001) 5.71 g (60 mmol) of <strong>[591-55-9]5-aminopyrimidine</strong> and 9.84 g (70 mmol) of 4-chlorobenzaldehyde are mixed in 75 ml of methanol and the reaction mixture is heated to boiling point. The crystalline solid precipitated from the solution on cooling weighs 6.22 g (47.6% of theory) and melts at 138-139 C. A further two fractions of the product--2.69 g (20.6% of theory, m.p.: 138-139 C.) and 3.0 g (23.7% of theory, m.p.: 137-138 C.)--can be isolated by recrystallising the distillation residue of the mother liquor from ethanol. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In methanol; | Example 2(c) Preparation of N-(2,4-dichlorobenzylidene)-<strong>[591-55-9]5-aminopyrimidine</strong> (compound 3.002) A solution of 5.71 g (60 mmol) of <strong>[591-55-9]5-aminopyrimidine</strong> in 30 ml of methanol is stirred at room temperature in a solution of 11.55 g (66 mmol) of 2,4-dichlorobenzaldehyde in 30 ml of methanol and the solution thus formed is heated with stirring to boiling point, whereupon the resultant product crystallises. The crystalline product is filtered with suction at room temperature and dried. The N-(2,4-dichlorobenzylidene)-<strong>[591-55-9]5-aminopyrimidine</strong> with a melting point of 189-191 C. weighs 14.51 g (95.9% of theory). |
Yield | Reaction Conditions | Operation in experiment |
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toluene-4-sulfonic acid; In toluene; | A. N-[(4-Chlorophenyl)methyl]-(5-pyrimidyl)imine To a solution of 7 g of 4-chlorobenzaldehyde and 5 g of <strong>[591-55-9]5-aminopyrimidine</strong> dissolved in 250 ml of toluene was added a catalytic amount of p-toluenesulfonic acid. The reaction mixture was refluxed for approximately 16 hours and the water formed as a by-product of the reaction was collected with a Dean Stark trap. The solution was filtered hot and the filtrate was concentrated under vacuum. The residue was washed with deithyl ether and Skellysolve B and the solids were dried to afford 9 g of N-[(4-chlorophenyl)methyl]-(5-pyrimidyl)imine. mp=140-141 C. Analysis calculated for C11 H8 ClN3: Theory: C, 60.70; H, 3.70; N, 19.31; Found: C, 60.97; H, 3.55; N, 19.07. |
Yield | Reaction Conditions | Operation in experiment |
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With potassium tert-butylate; dimethyl sulfoxide; In acetone; | REFERENCE EXAMPLE 9 To 10 ml of dimethyl sulfoxide was added 1.40 g (12.5 mmol) of potassium tert-butoxide, and to the solution was added 951 mg (10.0 mmol) of <strong>[591-55-9]5-aminopyrimidine</strong> while cooling with water. After stirring at room temperature for 1 hour, 0.54 ml (5.0 mmol) of 2-fluorobenzonitrile was added thereto while cooling with water, and the mixture was stirred at room temperature for 30 minutes. The reaction mixture was poured into ice-water, and the mixture was adjusted to pH 7.0 with 1 N hydrochloric acid, and filtered. The filter residue was dissolved in 200 ml of acetone, and the acetone solution was filtered. The filtrate was dried over magnesium sulfate, and the solvent was removed by distillation under reduced pressure to obtain 0.53 g (2.70 mmol) of 5-[N-(2cyanophenyl)amino]pyrimidine. Mass Spectrum (m/z): 196 (M+) NMR Spectrum (DMSO-d6, TMS internal standard) delta: 7.12 (1 H, t, J=7 Hz), 7.35 (1 H, d, J=8 Hz), 7.57-7.60 (1 H, m), 7.76 (1 H, dd, J=8 Hz, 1 Hz), 8.61 (2 H, s), 8.78 (1 H, s), 8.84 (1 H, s) |
Yield | Reaction Conditions | Operation in experiment |
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With potassium tert-butylate; dimethyl sulfoxide; | REFERENCE EXAMPLE 8 To 7 ml of dimethyl sulfoxide was added 0.69 g (6.15 mmol) of potassium tert-butoxide, and 468 mg (4.92 mmol) of <strong>[591-55-9]5-aminopyrimidine</strong> was added to the solution while cooling with water. After stirring at room temperature for 1 hour, 500 mg (2.46 mmol) of 2-bromo-5-nitropyridine was added thereto under cooling with water, followed by further stirring at room temperature for 30 minutes. The reaction solution was poured into ice-water and extracted with ethyl acetate. The organic layer was washed with 1 N hydrochloric acid, and the washing was adjusted to pH 8.5 with a 1 N sodium hydroxide aqueous solution and again extracted with ethyl acetate. The organic layer was combined with the above obtained organic layer, washed successively with water and a saturated sodium chloride aqueous solution, and dried over magnesium sulfate. The solvent was removed by distillation under reduced pressure, and the residue was purified by silica gel column chromatography (eluding solvent: chloroform-methanol). The resulting crude crystals were washed with ethyl ether to obtain 0.32 g (1.47 mmol) of 5-[N-(5-nitro-2-pyridyl)amino]pyrimidine. Mass Spectrum (m/z): 216 (M-H)+ NMR Spectrum (DMSO-d6, TMS internal standard) delta: 7.00 (1 H, d, J=9 Hz), 8.39 (1 H, dd, J=9 Hz, 3 Hz), 8.87 (1 H, s), 9.09 (1 H, d, J=3 Hz), 9.17 (2 H, s), 10.41 (1 H, s) |
Yield | Reaction Conditions | Operation in experiment |
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35.2% | With pyridine; In tetrahydrofuran; at 0℃; for 0.5h; | (2) 2,2,2-Trichloroethyl pyrimidin-5-ylcarbamate; To a solution of <strong>[591-55-9]pyrimidine-5-amine</strong> (100 mg, 1.05 mmol) and pyridine (0.255 ml, 3.15 mmol) in tetrahydrofuran (3 ml) was added 2,2,2-trichloroethyl chloroformate (0.217 ml, 1.58 mmol) with ice-cooling, the mixture was stirred for 30 minutes with ice-cooling, the reaction mixture was poured into ice-water and the mixture was extracted with ethyl acetate. The extract was washed with water and dried over anhydrous magnesium sulfate and the solvent was distilled off under reduced pressure. The residue was purified by silica gel column chromatography (hexane : ethyl acetate = 1 : 1) to obtain the desired product (100 mg, 35.2%) as a solid. 1H-NMR (CDCl3) delta; 4.87 (2H, s), 7.60 (1H, br s), 8.95 (2H, s), 9.02 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; HATU; In N,N-dimethyl-formamide; at 50℃; | Step 8: 6-Chloro-3-(4-ethylphenylamino)-N-(pyrimidin-5-yl)benzo[d]isoxazole-7-carboxamide 6-Chloro-3-(4-ethylphenylamino)benzo[d]isoxazole-7-carboxylic acid (0.195 g, 0.615 mmol) was dissolved in DMF, followed by TEA (0.223 ml, 1.61 mmol) and HATU (0.285 g, 0.749 mmol). The mixture was allowed to stir for 5 min before adding <strong>[591-55-9]pyrimidin-5-amine</strong> (0.0509 g, 0.535 mmol) and the mixture was heated to 50 C. overnight. The mixture was then cooled to RT, partitioned between EtOAc/brine, the layers were separated, and the aqueous was extracted with EtOAc (3*). The combined organics were washed with H2O and brine, filtered and concentrated. The crude material was purified by silica gel chromatography using 20:1 DCM/MeOH to give 6-Chloro-3-(4-ethylphenylamino)-N-(pyrimidin-5-yl)benzo[d]isoxazole-7-carboxamide as a light brown solid. MS calculated 393.8, found M+H+=394.1. |
Yield | Reaction Conditions | Operation in experiment |
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19% | Example 136Preparation of 1-{4-[7-morpholin-4-yl-3-(2,2,2-trifluoroethyl)-3H-[1,2,3]triazolo[4,5-d]pyrimidin-5-yl]phenyl}-3-pyrimidin-5-ylurea. To a stirred solution of triphosgene (29 mg, 0.1 mmol) in CHCl3 (7 mL) was added 4-[7-morpholin-4-yl-3-(2,2,2-trifluoroethyl)-3H-[1,2,3]triazolo[4,5-d]pyrimidin-5-yl]aniline (75 mg, 0.2 mmol) at 0 C. The reaction mixture was stirred for 15 min and <strong>[591-55-9]5-aminopyrimidine</strong> (57 mg, 0.6 mmol) and NEt3 (83 muL, 0.6 mmol) was added and the reaction mixture was stirred for 1 hr. The solvents were removed on a rotary evaporator and the crude mixture was purified by semi-prep-HPLC (NH3-method) to give 1-{4-[7-morpholin-4-yl-3-(2,2,2-trifluoroethyl)-3H-[1,2,3]triazolo[4,5-d]pyrimidin-5-yl]phenyl}-3-pyrimidin-5-ylurea (19 mg, 19% yield) MS (ESI) m/z 501.3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With PYRIMIDINE; at 20 - 60℃; | Step 1 : 4-Nitrophenyl pyrimidin-5-ylcarbamate; To a solution of <strong>[591-55-9]pyrimidin-5-amine</strong> (190 mg, 2.0 mmol) in pyrimidine (3 mL) was added 4-nitrophenyl chloroformate (403 mg, 2.0 mmol). The resulting mixture was stirred at RT overnight, and then heated to 60 0C overnight. After cooling to RT, the solvent was removed under vacuum to give the title compound as a brown solid, which was used in the next step without further purification. MS (ESI, positive ion) m/z: 261 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
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5% | With sodium t-butanolate;tris-(dibenzylideneacetone)dipalladium(0); 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; at 100℃;Inert atmosphere; | Intermediate 8 (40 mg, 0.130 mmol), <strong>[591-55-9]5-aminopyrimidine</strong> (14.8 mg, 0.156 mmol), xantphos (6.0 mg, 0.010 mmol), sodium t-butoxide (37 mg, 0.390 mmol) and Pd2(dba)3 (7.1 mg, 0.008 mmol) were placed in a sealed tube. The mixture was degassed, placed under an atmosphere of nitrogen and heated at 1000C overnight. The mixture was diluted with EtOAc and water. The organic phase was washed with brine, dried and concentrated. The residue was purified by mass-triggered preparative HPLC (low pH buffer) to afford a colourless oil. This material was passed through a SCX cartridge to provide the product as the free base (2.4 mg, 5 %). 1H NMR (400 MHz, DMSCW6) delta ppm 0.46 - 0.54 (m, 2 H), 0.80 - 0.90 (m, 2 H), 1.45 - 1.52 (m, 1 H), 1.65 - 1.77 (m, 3 H), 1.81 - 1.90 (m, 1 H), 1.93 - 2.16 (m, 4 H), 2.97 (quin, 7=8.24 Hz, 1 H), 3.09- 3.16 (m, 2 H), 3.35 - 3.46 (m, 2 H), 6.99 (t, /=5.72 Hz, 1 H), 7.63 - 7.71 (m, 2 H), 8.67 (s, 1 H), 9.15 (s, 2 H), 9.29 (s, 1 H); m/z (ES+APCI)+ : 368 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
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In 1,2-dichloro-ethane; acetonitrile; at 80℃; for 0.0833333h;Microwave irradiation; Sealed vial; | a) 2-Chloro-N-pyrimidin-5-yl-acetamide <strong>[591-55-9]5-Aminopyrimidine</strong> (450 mg) was suspended in DCE (2 mL) and acetonitrile (2 mL) in a microwave vial. Chloroacetyl chloride (0.377 mL) was added with stirring. The vial was sealed and the reaction mixture was heated in the microwave at 80 C. for 5 minutes. The solid was filtered off, washed with acetonitrile (2*5 mL), DCE (2*5 mL) and pentane (2 *30 mL) and then partioned between saturated sodium bicarbonate and DCE (50 mL/50 mL) ensuring the aqueous layer was still basic. The organic layer was separated and the aqueous layer was extracted with DCE (2*75 mL). The combined organic layer was dried over magnesium sulfate and evaporated to give the sub-titled compound (200 mg) as a yellow solid. 1H NMR (400 MHz, DMSO-D6): delta 10.71 (s, 1H), 9.00 (s, 2H), 8.93 (s, 1H), 4.35 (s, 2H). | |
Example 52: (R)-3-(l-Phenyl-cycloheptanecarbonyIoxy)-l-(pyrimidin-5- ylcarbamoylmethyl)-l-azonia-bicyclo[2.2.2]octane chloridea) 2-ChloiO-/V-pyrimidin-5-yl-acetamide <strong>[591-55-9]5-Aminopyrimidine</strong> (450 mg) was suspended in DCE (2 mL) and acetonitrile (2 mL) : microwave vial. Chloroacetyl chloride (0.377 mL) was added with stirring. The vial sealed and the reaction mixture was heated in the microwave at 800C for 5 minutes. T solid was filtered off, washed with acetonitrile (2 x 5 mL), DCE (2 x 5 mL) and penta x 30 mL) and then partioned between saturated sodium bicabonate and DCE (50 mL/* mL ) ensuring the aqueous layer was still basic. The organic layer was separated and t aqueous layer was extracted with DCE (2 x 75 mL). The combined organic layer was over magnesium sulfate and evaporated to give the sub-titled compound (200 mg) as i yellow solid.1H NMR (400 MHz, DMSO-D6): delta 10.71 (s, IH), 9.00 (s, 2H), 8.93 (s, IH), 4.35 (s, _ |
Yield | Reaction Conditions | Operation in experiment |
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In a 2 L round bottom flask with mechanical stirring was charged with 2-methyl-5-nitrobenzoic acid (20 g), HATU (38 g) and diisopropylamine (32 mL) in DMF (90 mL). This mixture was stirred for 30 min then <strong>[591-55-9]pyrimidin-5-amine</strong> was added and the reaction was stirred for 18 hr. The LCMS showed complete conversion. DMF was removed under vacuum as much as possible then water was added and a solid precipitated out (use mechanical stirring). The tan solid was filtered and rinsed with water, then taken up in EtOAc, washed with brine, dried over MgSO4, filtered and concentrated down. The crude was taken up in EtOAc and the product 45 precipitated out. This was filtered and the filtrate was concentrated down and taken up in EtOAc/Hex. After standing overnight, more solids were filtered and were combined with the first crop. 2-methyl-5-nitro-N-(pyrimidin-5-yl)benzamide 45 was obtained as a light yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
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65% | Example 60Synthesis of 2-[2-(difluoromethyl)-4-methoxy-1H-benzimidazol-1-yl]-6-(4-morpholinyl)-9-(5-pyrimidinyl)-9H-purineThe compound was synthesized by a modification of Method C.To 0.482 g (5.06 mmol) of <strong>[591-55-9]5-aminopyrimidine</strong> in THF (10 mL) was added 2.90 mL of NaHMDS (2 M solution in THF) at 0 C., and the mixture was stirred for 10 min. A solution of 0.5924 g (2.12 mmol) of 4-(2,6-dichloro-5-nitro-4-pyrimidinyl)morpholine (U.S. Pat. Appl. Publ. No. 2009/0181963, the disclosure of which is incorporated herein by reference in its entirety) in THF (5 mL) was added, and the resulting mixture was stirred for 15 min. The reaction mixture was neutralized with acetic acid, diluted with water, and extracted with EtOAc. The organic layer was washed with water and aq. NH3, dried, and concentrated. Chromatography on silica, eluting with hexanes/EtOAc (8:2), gave 0.465 g (65% yield) of 2-chloro-6-(4-morpholinyl)-5-nitro-N-(5-pyrimidinyl)-4-pyrimidinamine as a white powder: 1H NMR (DMSO-d6) delta10.34 (s, 1H), 8.98 (s, 1H), 8.92 (s, 2H), 3.70 (t, J=4.8 Hz, 4H), 3.50 (t, J=4.8 Hz, 4H).A mixture of 0.465 g (1.38 mmol) of the above nitro compound, 0.368 g (1.86 mmol) of 2-difluoromethyl-4-methoxy-1H-benzimidazole (Example 2) and 0.762 g (5.52 mmol) of powdered K2CO3 in 5 mL of DMSO was heated at 120 C. for 8 hrs. The reaction mixture was diluted with water, and extracted with EtOAc (×4). The organic layer was washed with brine, dried, and concentrated. Chromatography on silica, eluting first with hexanes/EtOAc (7:3) and then with CH2Cl2/EtOAc (1:2), gave 0.592 g (86% yield) of 2-[2-(difluoromethyl)-7-methoxy-2,3-dihydro-1H-benzimidazol-1-yl]-6-(4-morpholinyl)-5-nitro-N-(5-pyrimidinyl)-4-pyrimidinamine, as a yellow powder: 1H NMR (CDCl3) delta10.26 (s, 1H), 9.16 (s, 1H), 8.98 (s, 2H), 7.38 (dd, J=8.4, 0.6 Hz, 1H), 7.20 (t, J=8.4 Hz, 1H), 7.12 (t, JHF=53.5 Hz, 1H), 6.78 (d, J=7.8 Hz, 1H), 4.01 (s, 3H), 3.87 (t, J=4.8 Hz, 4H), 3.70 (t, J=4.8 Hz, 4H).To 0.162 g (0.33 mmol) of the above nitro compound in THF (40 mL) was added 0.2 g of 5% Pt on activated carbon, and the mixture was stirred under hydrogen (40 in/Hg) for 17 hrs. The reaction mixture was filtered through celite, and concentrated, to give 0.155 g of crude 2-[2-(difluoromethyl)-7-methoxy-2,3-dihydro-1H-benzimidazol-1-yl]-6-(4-morpholinyl)-N4-(5-pyrimidinyl)-4,5-pyrimidinediamine: 1H NMR (CDCl3) delta8.97-8.92 (m, 3H), 7.76 (s, 1H), 7.67 (d, J=8.3 Hz, 1H), 7.43 (t, JHF=53.8 Hz, 1H), 7.28-7.26 (m, 1H), 6.97 (s, 2H), 6.76 (d, J=7.9 Hz, 1H), 3.97 (s, 3H), 3.88 (t, J=4.6 Hz, 4H), 3.36 (t, J=4.6 Hz, 4H).A mixture of the above crude diamine (0.155 g, 0.33 mmol), trimethyl orthoformate (2.5 mL, 22.8 mmol), and p-toluenesulfonate monohydrate (0.05 g, 0.26 mmol) was heated at 95 C. for 3 hrs. The reaction mixture was cooled and concentrated, and the residue was purified by chromatography on silica, eluting with CH2Cl2/EtOAc (1:3), to give 0.115 g (73% over 2 steps) of 2-[2-(difluoromethyl)-4-methoxy-1H-benzimidazol-1-yl]-6-(4-morpholinyl)-9-(5-pyrimidinyl)-9H-purine as a yellow powder: mp 248-251 C.; 1H NMR (CDCl3) delta9.34 (s, 1H), 9.23 (s, 2H), 8.09 (s, 1H), 7.73 (dd, J=8.4, 0.6 Hz, 1H), 7.41 (t, JHF=53.5 Hz, 1H), 7.34 (t, J=8.2 Hz, 1H), 6.80 (d, J=7.7 Hz, 1H), 4.43 (br s, 4H), 4.05 (s, 3H), 3.91 (t, J=4.8 Hz, 4H); Anal. Calcd. for C22H19F2N9O2 0.09EtOAc: C, 55.1; H, 4.1; N, 25.9. Found: C, 55.05; H, 4.00; N, 25.5%. |
Yield | Reaction Conditions | Operation in experiment |
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35.7% | General procedure: To a suspension of CDI (106 mg, 0.651 mmol) in THF (10 mL) under nitrogen at roomtemperature was added 11g (200 mg, 0.651mmol). The reaction was stirred at room temperaturefor 10 min and 4-pyridazinamine (61.9 mg, 0.651 mmol) was added dropwise. After refluxed for14 hrs, the mixture was concentrated and water was added. The mixture was then extracted withEtOAc (50 mL*3). The combined organic phases were washed with brine, dried over Na2SO4 andconcentrated. The crude product was then washed with MeOH to give the title compound 7a (95mg, 38%) as a white solid. | |
Solid <strong>[62176-31-2]5-bromo-2-[(phenylmethyl)oxy]benzoic acid</strong> (may be prepared as described in Description 5, method C; 200 mg, 0.65 mmol) was added to a stirred suspension of CDI (106 mg, 0.65 mmol) in THF (3 ml) under nitrogen at 20C. The reaction mixture was stirred at room temperature for 10 min and pyrimidin-5-amine (61.9 mg, 0.65 mmol) was added dropwise. After refluxing for 14 h, the reaction mixture was concentrated to obtain crude product. The crude product was purified by silica gel chromatography eluting with hexane: ethyl acetate: triethylamine (4:1 :0.01) to yield the title compound. 150 mg. MS (electrospray): m/z [M+H]+ =384, 386 |
Yield | Reaction Conditions | Operation in experiment |
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28% | Example 61 Synthesis of Compound (II-19); Step (1): Compound 19a + Compound 19b ? Compound 19c; 5-Aminopyridine 19a (0.951 g, 10 mmol), Compound 19b (4.72 g, 11.00 mmol), 1-hydroxybenzotriazole (1.486 g, 11.00 mmol), and hydrochloric acid salt (2.109 g, 11.00 mmol) of N-(3-dimethylaminopropyl)-N'-ethylcarbodiimide were dissolved in dimethylacetamide(19.5 mL), subsequently stirring at 70C for 8.5 hours. Distilled water was added to the reaction solution, and then the precipitated solid was filtrated. The filtrated residue was washed with aqueous saturated sodium hydrogen carbonate, washed with distilled water, and then washed with diisopropyl ether. The residue was dissolved in methanol, followed by stirring for 3.5 hours under reflux. The reaction solution was filtrated, and then the filtrated residue was washed with methanol. The residue was dried in vacuo to yield Compound 19c as a white solid (1.41 g, 2 8%). 1H-NMR (DMSO-d6) delta(delta): 10.80 (1H, s), 9.09 (2H, s), 8.93 (1H, s), 7.48-7.26 (6H, m), 6.99 (2H, d, J = 8.5 Hz), 6.88 (2H, d, J = 8.5 Hz), 5.21 (2H, s), 4.93 (2H, s), 3.77 (3H, s), 3.75 (3H, s). |
Yield | Reaction Conditions | Operation in experiment |
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35% | With caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;tris(dibenzylideneacetone)dipalladium(0) chloroform complex; In 1,4-dioxane; at 130℃;Inert atmosphere; | A microwave reaction tube was charged with a suspension of 5-bromo-2-(2-methoxy-ethylamino)-pyrimidine-4-carboxylic acid ethyl ester (30 mg, 0.1 mmol), <strong>[591-55-9]5-aminopyrimidine</strong> (14 mg, 0.15 mmol) and cesium carbonate (45 mg, 0.14 mmol) in dioxane (0.6 ml) and flushed with argon. 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene (Xantphos; 19 mg, 32 mumol) and tris(dibenzylideneacetone)-dipalladium(0) chloroform adduct (10 mg, 10 mumol) were consecutively added and the reaction tube was sealed and stirred overnight at 130 C. After cooling-down to ambient temperature, the reaction mixture was filtrated. The filtrate was concentrated in vacuo and the product was obtained after purification by preparative HPLC using an acetonitrile /water gradient as yellow solid (11 mg, 35%). MS: M=319.2 (M+H)+ |
35% | With caesium carbonate;tris(dibenzylideneacetone)dipalladium(0) chloroform complex; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 130℃;microwave irradiation; Inert atmosphere; | A microwave reaction tube was charged with a suspension of 5-bromo-2-(2-methoxy- ethylamino)-pyrimidine-4-carboxylic acid ethyl ester (30 mg, 0.1 mmol), <strong>[591-55-9]5-aminopyrimidine</strong> (14 mg, 0.15 mmol) and cesium carbonate (45 mg, 0.14 mmol) in dioxane (0.6 ml) and flushed with argon. 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene (Xantphos; 19 mg, 32 muiotaetaomicron) and tris(dibenzylideneacetone)-dipalladium(0) chloroform adduct (10 mg, 10 muiotaetaomicron) were consecutively added and the reaction tube was sealed and stirred overnight at 130 C. After cooling-down to ambient temperature, the reaction mixture was filtrated. The filtrate was concentrated in vacuo and the product was obtained after purification by preparative HPLC using an acetonitrile/water gradient as yellow solid (11 mg, 35 %).MS: M = 319.2 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With potassium phosphate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;tris(dibenzylideneacetone)dipalladium(0) chloroform complex; In toluene; at 120℃; for 16h;Inert atmosphere; | A suspension of 5-bromo-2-methylpyrimidine-4-carboxylic acid methyl ester (89.1 mg, 386 mumol,), <strong>[591-55-9]5-aminopyrimidine</strong> (55.0 mg, 578 mumo) and potassium phosphate tribasic (115 mg, 540 mumol) in toluene (3 mL) was evacuated and flushed with argon. 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene (Xantphos; 73.6 mg, 127 mumol) and tris(dibenzylideneacetone)-dipalladium(0) chloroform adduct (39.9 mg, 38.6 mumol) were added and the reaction mixture was stirred at 120 C. for 16 h. The reaction mixture was poured into ethyl acetate (50 mL) and extracted with water. The organic phase was washed brine and the aqueous layers were back-extracted with ethyl acetate. The organic layers were dried and the solvent was removed. The product was obtained after silica gel chromatography using a heptane /ethyl acetate gradient as light yellow solid (55 mg, 58%). MS: M=246.2 (M+H)+ |
58.5% | With potassium phosphate;tris(dibenzylideneacetone)dipalladium(0) chloroform complex; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; at 120℃; for 16h;Inert atmosphere; | A suspension of 5-bromo-2-methylpyrimidine-4-carboxylic acid methyl ester (89.1 mg, 386 muiotaetaomicron,), <strong>[591-55-9]5-aminopyrimidine</strong> (55.0 mg, 578 muiotaetaomicron) and potassium phosphate tribasic (115 mg, 540 muiotaetaomicron) in toluene (3 mL) was evacuated and flushed with argon. 4,5-Bis(diphenylphosphino)-9,9- dimethylxanthene (Xantphos; 73.6 mg, 127 muiotaetaomicron) and tris(dibenzylideneacetone)-dipalladium(0) chloroform adduct (39.9 mg, 38.6 muiotaetaomicron) were added and the reaction mixture was stirred at 120C for 16 h. The reaction mixture was poured into ethyl acetate (50 mL) and extracted with water. The organic phase was washed brine and the aqueous layers were back-extracted with ethyl acetate. The organic layers were dried and the solvent was removed. The product was obtained after silica gel chromatography using a heptane/ethyl acetate gradient as light yellow solid (55 mg, 58 %).MS: M = 246.2 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
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47% | In dichloromethane; at 20℃; for 1h; | To a solution of <strong>[591-55-9]pyrimidin-5-amine</strong> (970 mg, 10 mmol) in CH2Cl2 (25 mL), phenylacetyl chloride (0.86 mL, 6.7 mmol) was added. The mixture was stirred at room temperature for 1 h. After that,the solvent was removed on a rotary evaporator, and the crude was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate = 5:1) to afford 1n (662 mg,47%) as a yellow solid. m.p. 75-76 C. IR (KBr): 3417, 3200, 3152, 3089, 3040, 2924, 1694, 1540,1434 cm-1. 1H NMR (500 MHz, CDCl3): delta 8.88-8.87 (m, 3H), 8.44 (br, 1H), 7.33-7.23 (m, 5H),3.69 (s, 2H). 13C NMR (125 MHz, CDCl3): delta 170.41, 154.01, 147.91, 133.66, 129.37, 129.23,127.88, 44.12. MS (EI): m/z (%) 213 (28) [M+], 118 (43), 92 (12), 91 (100), 65 (13). Anal. Calcd.for C12H11N3O: C, 67.59; H, 5.20; N, 19.71. Found: C, 67.35; H, 5.25; N, 19.56. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
48% | General procedure: Isopropylmagnesium chloride (2.0 M solution in THF, 6.23 mL, 12.5 mmol) was added to a solution the amine(13.0 mmol) in THF (90 mL). After stirring for several minutes, the solution was quickly transferred to a flask containing (2S,4S)-methyl 1-(4-((5-cyclopropyl-1H-pyrazol-3-yl)amino)pyrrolo[2,1-f][1,2,4]triazin-2-yl)-4-fluoropyrrolidine-2-carboxylate (2.59 mmol). The reaction was stirred overnight at rt, then quenched with sat aq NH4Cl (150 mL). The mixture was extracted with EtOAc (150 mL), and the organics were washed with water (3 × 150 mL), dried (MgSO4), filtered, and concentrated in vacuo. The residue was purified via a silica gel column (0-35% 90:10:1 [CH2Cl2/MeOH/NH4OH]/CH2Cl2), then by preparative HPLC (Waters Atlantis 30 × 100 mm, 0-70% 9:1 [MeOH/H2O 0.1% TFA]/1:9 [MeOH/H2O 0.1% TFA]). Product-containing fractions were concentrated on a Waters Oasis MCX cartridge, rinsed with MeOH, then eluted with 2 N NH3/MeOH. The eluent was concentrated in vacuo to obtain the desired product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With phosphorus tribromide; at 50 - 60℃; for 3.5h; | <strong>[591-55-9]5-aminopyrimidine</strong> (51 g, 0.54 mol, 1 eq)withPhosphorus tribromide (292 g, 1.08 mol, 2 eq)Add slowly to formamide (300mL), maintain the internal temperature at 50-60C, and complete dropwise within 0.5h;The reaction temperature was maintained for 3h; the HPLC analysis showed that the starting material had basically disappeared, the reaction was stopped, and the system was brought to room temperature.The reaction mixture was poured into 600 mL of saturated sodium bicarbonate solution and stirred for 10 min.Extract with dichloromethane (300 mL*3); combine the organic phases and wash with saturated brine (300 mL*1).Dry over anhydrous sodium sulfate, filter, and concentrate the filtrate under reduced pressure.The pyrimido[5,4-D]pyrimidine crude product was obtained in an amount of 75 g (yield >100%, document yield: 86%), and was directly introduced into the next reaction. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | With caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;tris-(dibenzylideneacetone)dipalladium(0); In toluene; at 100℃; for 18h;microwave irradiation; Inert atmosphere; | 5. ROUTE Va. N-(5-BROMOPYRIDIN-3-YL)PYRIMIDIN-5-AMINE (10).[00321] 3,5-Dibromopyridine (0.30 g, 1.3 mmol, 1.0 eq), <strong>[591-55-9]5-aminopyrimidine</strong> (120 mg, 1.26 mmol, 1.00 eq), Cs2C03 (578 mg, 1.77 mmol, 1.40 eq), Pd2(dba)3 (58 mg, 0.10 mmol, 0.080 eq), 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (88 mg, 0.15 mmol, 0.12 eq) and toluene (4.2 mL) were added to a microwave vial. The vial was purged with argon, capped and heated at 100 C for 18h. After cooling the reaction was filtered over a plug of celite and the plug was washed with 5% MeOH/CH2Cl2. The solvents were removed in vacuo and the crude mixture was purified by flash chromatography on silica gel afforded 175 mg (55%) of the title compound as an off-white solid: NMR (400 MHz, CDC13) delta 8.95 (bs, IH), 8.76 (s, IH), 8.64 (s, 2H), 8.37 (d, J= 2.4 Hz, IH), 8.20 (d, J= 2.0 Hz, IH), 7.73 (t, J= 2.2 Hz, IH); [M+l]+: 251.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 66 (3S)-2-(2R)-3-Cyclopentyl-2-[formyl(hydroxy)amino]methyl}propanoyl)-N-5-pyrimidinyl-3-pyrazolidinecarboxamide 5-pyrimidinamine (38.9 mg, 0.409 mmol). MS (ES+) m/z 391.2 (MH+). | ||
Example 66 (3S)-2-((2R)-3-Cyclopentyl-2-[formyl(hydroxy)amino]methyl}propanoyl)-N-5-pyrimidinyl-3-pyrazolidinecarboxamide 5-pyrimidinamine (38.9 mg, 0.409 mmol). MS (ES+) m/z 391.2 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32% | With palladium diacetate; caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 120℃; for 0.5h;Inert atmosphere; Microwave irradiation; | Example 40: Synthesis of 2-(2-(2-(5-chloro-2-(pyrimidin-5-ylamino)pyrimidin-4- yl)ethyl)phenyl) propanamide (40)2-(2-(2-(5-Chloro-2-(pyrimidin-5-ylamino)pyrimidin-4-yl) ethyl) phenyl) propanamide(40)A mixture of 2-(2-(2-(5-chloro-2-( i-methyl-i H-pyrazol-4-ylam ino)pyrimidin-4-yl)ethyl)phenyl) propanamide A30 (0.080 g, 0.25 mmol), <strong>[591-55-9]5-aminopyrimidine</strong> (0.047 g,0.49 mmol), Xantphos (0.0057 g, 0.010 mmol) and 0s2003 (0.24 g, 0.74 mmol) in1,4-dioxane (3 mL) was bubbled with nitrogen for 10 minutes. Palladium (II) acetate (0.0011 g, 0.0049 mmol) was added and the mixture was heated at 120 00 undermicrowave irradiation for 20 minutes. The volatiles were removed in vacuo and the residue was purified by silica gel column chromatography (Combiflash Rf, 0-10% MeOH in DCM) to give the title compound 40 as an off white solid (0.030 g, 32%). LCMS-C: rt 4.85 mm; m/z 383 [M+H]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21% | 1-(2-(2-(5-Chloro-2-(pyrimidin-5-ylamino)pyrimidin-4- yI)ethyl)phenyl)cyclopropanecarboxamide (12) A suspension of 1-(2-(2-(2,5-dichloropyrimidin-4-yl)ethyl)phenyl)cyclopropanecarboxamide A14 (0.100 g, 0.297 mmol), 0s2003 (0.291 g, 0.892 mmol) and <strong>[591-55-9]5-aminopyrimidine</strong> (56.6 mg, 0.595 mmol) in 1,4-dioxane (3 mL) was sonicated for 10 minutes. Xantphos (6.9 mg, 12 pmol) and Pd(ll) acetate (1.3 mg, 5.9 pmol) were added and the reaction was irradiated in the microwave at 12000 for 20 minutes. The resulting mixture was adsorbed onto silica gel and purified bycolumn chromatography (Biotage Isolera, 40g Si02 cartridge, 0-100% EtOAc inpetroleum benzine 40-60 00 then 0-40% MeOH in EtOAc) to give a solid which wassuspended in 0.5 M aqueous citric acid (50 mL) and sonicated for 10 minutes. Theprecipitate was collected by filtration and the filter cake was washed with 2 M aqueous NaOH (100 mL), cyclohexane (100 mL) and air dried to give the title compound 12 as a yellow solid (25 mg, 21%). LCMS-B: rt 4.89 mm; m/z 395.0 [M+H]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A 0.5-2.0 ml microwave vessel equipped with a Teflon stir bar is charged with 15a1 (20 mg;0.05 mmol), <strong>[591-55-9]pyrimidin-5-ylamine</strong> (25 mg; 0.26 mmol), a mixture of 2-MeTHF:AcOH 95:5 (0.80ml) and SiliaBond Cyanoborohydride (1 00 mg; 0.1 mmol). The vessel is capped and heatedunder microwave irradiation at 1200C for 10 min. The reaction mixture is filtered through anAcrodisc filter (DMSO rinsed) and purified by preparative HPLC (Sunfire column; MeCN/AmForat 45C}. The desired fractions are collected and concentrated. The enantiomers are separatedby SFC (multiple stacked injections): SFC-MS: Waters Prep 100, Column: IB 10 x 250 mm at40QC, Eluent A: C02 , Eluent B: MeOH, Gradient: socratic 50:50 C02:MeOH at 50 ml I min,Back Pressure Regulator: 150 Bars, Run Time: 10 min.The desired fractions are collected and concentrated in vacuo afford to afford 31 a1 (tR = 1.01min, (M+Ht 467.3). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
11 mg | With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; for 16h; | Example 11 Preparation of Compound Nos. 7, 7a and 7b To a solution of 1-(4-(3-cyclopropyl-1H-pyrazol-5-ylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-2-yl)pyrrolidine-2-carboxylic acid (300 mg, 0.847 mmol) in DMF (4 mL) was added <strong>[591-55-9]pyrimidin-5-amine</strong> (201 mg, 2.11 mmol), HATU (386 mg, 1.016 mmol) and DIPEA (0.24 mL, 1.4 mmol). The reaction mixture was allowed to stir at RT for 16 h. The reaction mixture was diluted with water (40 mL) and extracted with EtOAc (2*25 mL). The organic layer was washed with water (8*30 mL) and dried over anhydrous sodium sulfate. Removal of EtOAc under reduced pressure gave a crude product that was purified by reverse phase HPLC to afford 11 mg of 1-(4-(3-cyclopropyl-1H-pyrazol-5-ylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-2-yl)-N-(pyrimidin-5-yl)pyrrolidine-2-carboxamide as free base. 1H NMR (400 MHz, CD3OD, formate salt) delta (ppm): 0.58-0.67 (m, 2H), 0.80-0.94 (m, 2H), 1.70-1.78 (m, 1H), 2.09-2.21 (m, 4H), 2.22-2.42 (m, 2H), 2.78-2.81 (m, 2H), 2.82-2.95 (m, 2H), 3.60-2.70 (m, 1H), 3.78-3.88 (m, 1H), 4.78 (dd, 1H), 6.08 (s, 1H), 8.84 (s, 1H), 8.89 (s, 2H). Separation by chiral HPLC provided enantiomers 7a and 7b. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With pyridine; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In dichloromethane; at 20℃;Inert atmosphere; | General procedure: To a solution of acid 1 (0.05 mmol), EDCI·HCl (0.12 mmol), and pyridine (0.13 mmol) in CH2Cl2 (1 mL) was added the corresponding aniline (0.1 mmol) and stirred at room temperature under Ar overnight. Upon complete consumption of acid 1, the solvent was removed in vacuo and redissolved in THF (1 mL). The reaction mixture was then treated with TBAF (0.2 mmol) and stirred for 30 min, and upon completion saturated aqueous NH4Cl was added and extracted 3× with EtOAc. The combined organic layers were then dried over Na2SO4, filtered, and concentrated in vacuo to give a crude oil. The residue was purified via flash chromatography (SiO2, 49:1, CH2Cl2/MeOH) to afford the desired amide. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32 mg | With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane; at 80℃; for 6h; | 0387-1 A mixture of <strong>[1309774-03-5]7-bromo-2-chloro-1,5-naphthyridine</strong> (100 mg), pyrimidine-5-amine (38 mg), tris(dibenzylideneacetone)dipalladium(0) (37 mg), 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (47 mg), cesium carbonate (267 mg), and 1,4-dioxane (2 mL) was stirred at 80 C. for 6 hours. The reaction mixture was cooled to room temperature, the insolubles were filtered off using celite, and the obtained solution was purified by silica gel column chromatography (methanol-ethyl acetate), thereby obtaining 6-chloro-N-(pyrimidin-5-yl)-1,5-naphthyridine-3-amine (32 mg). MS m/z (M+H): 258. |
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