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Chemical Structure| 69901-85-5 Chemical Structure| 69901-85-5

Structure of Z-D-Chg-OH
CAS No.: 69901-85-5

Chemical Structure| 69901-85-5

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Product Details of [ 69901-85-5 ]

CAS No. :69901-85-5
Formula : C16H21NO4
M.W : 291.34
SMILES Code : [H][C@@](NC(=O)OCC1=CC=CC=C1)(C1CCCCC1)C(O)=O
MDL No. :MFCD00191082
InChI Key :CUSYTUPJAYLNFQ-CQSZACIVSA-N
Pubchem ID :14510026

Safety of [ 69901-85-5 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302
Precautionary Statements:P280-P305+P351+P338

Computational Chemistry of [ 69901-85-5 ] Show Less

Physicochemical Properties

Num. heavy atoms 21
Num. arom. heavy atoms 6
Fraction Csp3 0.5
Num. rotatable bonds 7
Num. H-bond acceptors 4.0
Num. H-bond donors 2.0
Molar Refractivity 78.8
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

75.63 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.45
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

3.44
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.79
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

2.08
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.09
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.57

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.56
Solubility 0.0797 mg/ml ; 0.000274 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-4.71
Solubility 0.00569 mg/ml ; 0.0000195 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Moderately soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-3.4
Solubility 0.117 mg/ml ; 0.000403 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

Yes
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-5.63 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.56

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<0.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

3.0

Application In Synthesis of [ 69901-85-5 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 69901-85-5 ]

[ 69901-85-5 ] Synthesis Path-Downstream   1~35

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  • 4
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  • [ 74-88-4 ]
  • (R)-(Benzyloxycarbonyl-methyl-amino)-cyclohexyl-acetic acid [ No CAS ]
  • 5
  • N-(benzyloxycarbonyl)-α-dehydrocyclohexylglycine [ No CAS ]
  • [ 69901-75-3 ]
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  • 6
  • [ 50-00-0 ]
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  • [ 876366-38-0 ]
  • 7
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  • (R)-(Benzyloxycarbonyl-methyl-amino)-cyclohexyl-acetic acid [ No CAS ]
  • 8
  • [ 69901-85-5 ]
  • (R)-2-Cy-(N-3,5-diMe-C6H3)-2-(N-Me-N-formylamino)acetamide [ No CAS ]
  • 9
  • [ 69901-85-5 ]
  • [ 876366-40-4 ]
  • 10
  • [ 69901-85-5 ]
  • (R)-2-Cyclohexyl-N-(3,5-dimethyl-phenyl)-2-methylamino-acetamide; compound with formic acid [ No CAS ]
  • 11
  • [ 621-84-1 ]
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  • 12
  • [ 4354-49-8 ]
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  • 13
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  • (S)-1-((R)-2-Cyclohexyl-2-methylamino-acetyl)-pyrrolidine-2-carboxylic acid [(S)-1-(benzothiazole-2-carbonyl)-4-guanidino-butyl]-amide [ No CAS ]
  • 14
  • [ 69901-85-5 ]
  • C42H53N7O7S2 [ No CAS ]
  • 15
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  • C42H51N7O7S2 [ No CAS ]
  • 16
  • [ 24461-61-8 ]
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  • 17
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  • 18
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  • [ 127042-95-9 ]
  • 19
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  • [ 127042-94-8 ]
  • 20
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  • [ 127042-96-0 ]
  • 21
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  • [ 127042-97-1 ]
  • 22
  • [ 37763-24-9 ]
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  • 23
  • [ 501-53-1 ]
  • [ 69901-85-5 ]
  • 24
  • [ 69901-85-5 ]
  • [ 6638-79-5 ]
  • [ 876761-30-7 ]
YieldReaction ConditionsOperation in experiment
90% Step 1. Synthesis of [(R)-Cyclohexyl-(methoxy-methyl-carbamoyl)-methyl]-carbamic acid benzyl ester To a solution of (R)-benzyloxycarbonylamino-cyclohexyl-acetic acid (25 g, 88 mmol) in DMF (100 mL) at -10 C was added HATU (36.7 g, 96 mmol, 1 .0 equiv) followed by Nu,Omicron- dimethyl hydroxyamine HCI salt (10.3 g, 105 mmol, 1 .2 equiv). To this solution was then slowly added N-methyl morpholine (28.9 mL, 263 mmol, 3.0 equiv). The internal temperature was carefully monitored. During the addition, the internal temperature rose to 0 C. The solution was stirred at 0 C for 2 hours after which the solution was diluted with EtOAc (500 mL) and washed with sat. aq. NaHC03 solution, water, 1 .0 N aq. HCI solution and brine. The organic layer was dried over Na2S04 and the solvent including DMF was removed under vacuum. The residue was diluted with EtOAc and the solution was washed with water, brine, dried (MgS04) and concentrated to give product [(R)-Cyclohexyl-(methoxy-methyl-carbamoyl)-methyl]- carbamic acid benzyl ester 26 g (yield 90 %).
  • 25
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  • [ 876761-31-8 ]
  • 26
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  • [ 1356457-06-1 ]
  • 27
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  • [ 1240586-10-0 ]
  • 28
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  • [ 1356457-07-2 ]
  • 29
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  • [ 1356457-08-3 ]
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  • [ 1356453-54-7 ]
  • 31
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  • [ 1356457-10-7 ]
  • 32
  • [ 69901-85-5 ]
  • methyl 3-(4-(3-aminophenyl)-1H-1,2,3-triazol-1-yl)propionate [ No CAS ]
  • (R)-methyl 3-(4-(3-(2-(((benzyloxy)carbonyl)amino)-2-cyclohexylacetamido)phenyl)-1H-1,2,3-triazol-1-yl)propanoate [ No CAS ]
YieldReaction ConditionsOperation in experiment
59% With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 40℃;Inert atmosphere; Sealed tube; General procedure: In a typical run, a 15 mL screw cap tube was charged with the selected carboxylic acid (0.5 mmol), HATU (2 equiv/mol), DMF(1 ml) and DIPEA (2 equiv/mol.). A solution of 1 or 2 (0.5 mmol) in DMF (1 ml) was then added dropwise. The tube was flushed with argon, sealed, and the mixture was stirred overnight at 40 C. After cooling down to rt, the crude reaction mixture was diluted with water (10 mL) and extracted with EtOAc(3 15 mL). The combined organic layers were washed with brine(3 15 mL), dried over anhydrous MgSO4, filtered and concentrated under reduced pressure to give a residue, which was purified as indicated for each compound (see Supporting material).
  • 33
  • [ 69901-85-5 ]
  • tert-butyl N-[(2R,3S)-3-(4-aminophenyl)-1-(4-methylpiperazin-1-yl)-1-oxobutan-2-yl]carbamate [ No CAS ]
  • benzyl N-[(S)-({4-[(2S,3R)-3-[(tert-butoxy)carbonyl]amino}-4-(4-methylpiperazin-1-yl)-4-oxobutan-2-yl]phenyl}carbamoyl)(cyclohexyl)methyl]carbamate [ No CAS ]
YieldReaction ConditionsOperation in experiment
92% With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; for 18h; To a solution of 91B (0.125 g, 0.332 mmol, 1.0 eq.) in DMF (1 mL) were added Z-Chg-OH (0.106 g, 0.364 mmol, 1.1 eq.), DIPEA (0.17 mL, 0.996 mmol, 3.0 eq.) and HATU (0.189 g, 0.498 mmol, 1.5 eq.) and the resulting mixture was stirred for 18 h. Aqueous saturated sodium bicarbonate solution was added and then extracted with EtOAc. The combined organic phase was washed with brine, dried over sodium sulfate then concentrated to dryness to afford 92B as an orange solid (0.199 g, 92%) which was used in the next step without further purification. UPLC-MS (basic 2 min): Rt=1.21 min; m/z=650.3 for [M+H]+
  • 34
  • [ 69901-85-5 ]
  • methyl (2R)-3-(4-aminophenyl)-2-propanamidopropanoate [ No CAS ]
  • (R)-methyl 3-(4-((S)-2-(benzyloxycarbonylamino)-2-cyclohexylacetamido)phenyl)-2-propionamidopropanoate [ No CAS ]
YieldReaction ConditionsOperation in experiment
94% To a solution of Z-Chg-OH 4 (0.816 g, 2.80 mmol, 1.2 eq.) in DMF (12.0 mL) was added HATU (1.34 g, 3.51 mmol, 1.5 eq.) and DIPEA (1.22 mL, 7.02 mmol, 3.0 eq) and then stirred at RT for 10 min. A solution of 3 (0.585 g, 2.34 mmol, 1.0 eq,) in DMF (10.0 mL) was added and the resulting mixture was stirred at RT for 1 h. The mixture was concentrated to dryness and the residue triturated with EtOAc/heptane (9:1) to afford 5 as a white solid (1.10 g, 94%). 1H NMR (400 MHz, DMSO-d6) δ 10.01 (s, 1H), 8.78-8.09 (m, 2H), 7.55-7.27 (m, 8H), 7.13 (d, J=8.1 Hz, 2H), 5.03 (s, 2H), 4.43 (td, J=8.6, 5.6 Hz, 1H), 4.00 (t, J=8.3 Hz, 1H), 3.61 (s, 3H), 3.16-3.07 (m, 1H), 2.96 (dd, J=13.8, 5.6 Hz, 1H), 2.83 (dd, J=13.8, 9.2 Hz, 1H), 2.07 (q, J=7.6 Hz, 2H), 1.76-1.51 (m, 4H), 1.17-0.99 (m, 5H), 0.92 (t, J=7.6 Hz, 3H). UPLC-MS (basic 2 min): rt=1.14 min; m/z=541.3 for [M+H]+.
  • 35
  • [ 69901-85-5 ]
  • tert-butyl N-[(2R)-3-(4-amino-3-fluorophenyl)-1-(4-methylpiperazin-1-yl)-1-oxopropan-2-yl]carbamate [ No CAS ]
  • benzyl N-[(S)-({4-[(2R)-2-[(tert-butoxy)carbonyl]amino}-3-(4-methylpiperazin-1-yl)-3-oxopropyl]-2-fluorophenyl}carbamoyl)(cyclohexyl)methyl]carbamate [ No CAS ]
YieldReaction ConditionsOperation in experiment
65% With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; for 18h; To a solution of 43A (1.0 g, 2.63 mmol, 1.0 eq.) in DMF (10 mL) were added Z-Chg-OH (0.919 g, 3.15 mmol, 1.2 eq.), DIPEA (1.8 mL, 10.5 mmol, 4.0 eq.) and HATU (1.50 g, 3.94 mmol, 1.5 eq.) and the resulting mixture was stirred for 18 h. Aqueous saturated sodium bicarbonate solution was added and then extracted with EtOAc. The combined organic phase was washed with brine, dried over sodium sulfate then concentrated to dryness. The residue was purified by flash column chromatography (Silica, 0-10% MeOH, DCM with 5% aq. NH3) to afford 44A as a white solid (1.12 g, 65%). 1H NMR (400 MHz, DMSO-d6) δ 9.71 (s, 1H), 7.71 (t, J=8.3 Hz, 1H), 7.44 (d, J=8.7 Hz, 1H), 7.41-7.23 (m, 4H), 7.23-7.08 (m, 2H), 7.01 (dd, J=8.2, 1.8 Hz, 1H), 5.04 (s, 2H), 4.57 (q, J=8.0 Hz, 1H), 4.18 (t, J=8.0 Hz, 1H), 3.32 (s, 2H), 3.18 (d, J=5.0 Hz, 1H), 2.91-2.64 (m, 2H), 2.23 (s, 3H), 2.13 (s, 4H), 2.01 (d, J=9.8 Hz, 1H), 1.69 (d, J=7.5 Hz, 5H), 1.60 (d, J=10.8 Hz, 1H), 1.31 (s, 9H), 1.09 (d, J=33.8 Hz, 7H). UPLC-MS (basic 4 min): Rt=2.05 min; m/z=654.3 for [M+H]+.
 

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