Structure of Butyl glycolate
CAS No.: 7397-62-8
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CAS No. : | 7397-62-8 |
Formula : | C6H12O3 |
M.W : | 132.16 |
SMILES Code : | OCC(OCCCC)=O |
MDL No. : | MFCD00042732 |
InChI Key : | VFGRALUHHHDIQI-UHFFFAOYSA-N |
Pubchem ID : | 81882 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H227-H302-H319 |
Precautionary Statements: | P210-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.83 |
Num. rotatable bonds | 5 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 33.4 |
TPSA ? Topological Polar Surface Area: Calculated from |
46.53 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.89 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.71 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.32 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.39 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.58 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.78 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.78 |
Solubility | 22.1 mg/ml ; 0.167 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.27 |
Solubility | 7.18 mg/ml ; 0.0543 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.97 |
Solubility | 14.3 mg/ml ; 0.108 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.6 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.51 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
stannous octoate; In hexanoic acid; at 135℃; | The reaction was performed in a melt of glycolide using 1.5 equivalents of glycolide with 1 eq. of butanol in the presence of 0.001 Eq of tin catalyst (Tin II ethylhexanoate 90% in hexanoic acid). The reactants were then charged into a vial/round bottom reactor containing a stir bar. The reaction vessel was then sealed and flushed with Nitrogen before being dipped in an oil bath maintained at a temperature around 135C. The reaction was then allowed to run overnight with constant stirring. The next day, the flask was removed from the oil bath and 2-3 ml of dry CHC13 was added to the reaction mixture immediately to prevent the solidification of the melt. The compound was then purified by column chromatography using a silica column and 2% isopropanol + 98% CHC13 as the solvent system. The first two fractions contained the compound. The TLC of the fractions was done using a silica TLC plate and developed by charring with PMA. The solvent was then stripped off from the combined fractions 2 and 3 and the compound was dried in high vacuum overnight. The structure was analyzed by proton NMR and C¹3 NMR. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
~ 20% | With 1,1'-carbonyldiimidazole; In dichloromethane; at 0 - 20℃; | The esterification of metharylic acid with BG was done by carbonyl diimidazole coupling. 1 Eq. of methacrylic acid was charged into suitable sized round bottom flask (RBF) with a stir bar. 10 volumes of dichloromethane was then added to it. RBF was then sealed with a rubber septa and the mixture of methacrylic acid and dichloromethane was then flushed with N2 for 5 minutes. The RBF was then placed in an ice bath until the contents cooled down to 0C. Then CDI was then added to the reaction through the mouth of the RBF by removing the septa. Frothing was observed in the reactor. Once the frothing stopped, the reaction vessel was sealed by rubber septa and <strong>[7397-62-8]butyl glycolate</strong> was added using a syringe. The ice bath was removed and the reaction allowed to run at room temperature. It was followed by thin layer chromatography (TLC) on silica using 2% isopropanol/98% chloroform and separately using chloroform/methanol/acetic acid (CMA) 98: 2:2. No spot for carbonyl diimidazole was observed after 2.5 hrs. The spot for the compound overlaps with that of carbonyl diimidazole in the TLC done using 2% isopropanol, but a distinct spot was seen for the compound in the TLC done with CMA. Once the reaction was complete, the solvent was removed in vacuo and the sample was purified by column chromatography. The yield was approximately 20%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78 - 93% | With 1-methyl-pyrrolidin-2-one; 1,8-diazabicyclo[5.4.0]undec-7-ene; at 110℃; for 3 - 3.41667h; | [0388] A. First Variation [0389] This reaction was conducted in a jacketed, 0.1 L reactor equipped with an agitator, nitrogen purge, thermocouple, and condenser. The reactor was charged with 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10) prepared as shown in Part E (10 g, 0.029 mol); 1-methyl-2-pyrrolidinone (20 g, 0.20 mol); <strong>[7397-62-8]butyl glycolate</strong> (11) (9.7 g, 0.073 mol), and 1,8-diazabicyclo[5.4.0]undec-7-ene (?DBU?) (0.45 g, 0.0029 mol). After stirring was initiated, the mixture was heated to about 110 C., and then maintained at that temperature for 3 hours. At that point, it was determined by HPLC that conversion from starting material to product had ceased (i.e., <3 area % starting material remained). The reactor contents were then cooled to 25 C. over 1 hour. Ethanol 3A (1.74 g, 0.038 mol) was then charged to the reactor. The resulting mixture was maintained at 25 C. for an additional hour, and then further cooled to 0 C. over 30 minutes. This temperature was maintained for an additional 2 hours. The solids were collected via filtration using a 4 micron filter cloth, washed with NMP (2×18 g), and air-dried on the filter giving rise to the NMP solvate of the desired product, which was analyzed via differential scanning calorimetry (?DSC?). The solids were introduced to the reactor along with 100 mL of ethanol. The resulting mixture was then heated to reflux, and maintain at reflux for 4 hours. Afterward, the mixture was cooled to 15 C. over 3 hours. The product was then isolated by filtration using a 4 micron filter cloth, washed (using a displacement wash) with ethanol 3A (2×33 g), and air-dried on the filter. This yielded 9.0 g of white/off-white/yellow crystals (78% yield) (HPLC weight % >98%). [TABLE-US-00006] TABLE 6 Reaction Summary for Part F density volume MW equiv. wt. (g) moles (g/mL) (mL) materials compound (10) 339.83 1.00 10.0 0.029 1-methyl-2- 99.13 6.96 20.0 0.20 1.028 15.6 pyrrolidinone 1,8-Diazabicyclo- 152.24 0.10 0.45 0.0029 1.018 0.44 (5.4.0)undec-7-ene compound (11) 132.16 2.5 9.7 0.073 1.019 9.5 Ethanol 3A 46.01 1.31 1.7 0.038 0.790 2.2 1-methly-2- 99.13 6.26 18.0 0.18 1.028 17.5 pyrrolidinone (wash) 1-methly-2- 99.13 6.26 18.0 0.18 1.028 17.5 pyrrolidinone (wash) Ethanol 3A 46.01 59.2 79 1.72 0.790 100 Ethanol 3A (wash) 46.01 24.7 33 0.72 0.790 26.1 Ethanol 3A (wash) 46.01 24.7 33 0.72 0.790 26.1 product compound (12) 397.86 (1.00) (11.5) (0.029) The numbers in parenthesis in the above table are theoretical. [0390] B. Second Variation [0391] In the second variation, the reaction was conducted in a jacketed, 49 L reactor equipped with a retreat curve agitator, nitrogen purge, and metering pump. This reactor was charged with 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10) prepared as shown in Part E (1.9 Kg, 5.6 mol) and 1-Methyl-2-pyrrolidinone (3.8 Kg, 38.3 mol). After initiating agitation at 75 rpm and allowing the mixture to stir for 6 minutes, the reactor was further charged with <strong>[7397-62-8]butyl glycolate</strong> (11) (1.85 Kg, 14 mol, added via an addition funnel) and DBU (85.12g, 0.54 mol) while continuing to stir the contents. The mixture was then heated to 110 C. over 23 minutes, and then held at that temperature for 3 hours. A sample taken 15 minutes after the 110 C. temperature had been reached indicated a 87.2% conversion of the 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl) pyrazole (10), a sample taken 60 minutes after the 110 C. temperature had been reached indicated a 98.7% conversion of the 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10), and a sample taken 120 minutes after the 110 C. temperature had been reached indicated a 99.7% conversion of the 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10). After the heating, the reaction mixture was cooled to approximately 25 C. over 1 hour and 5 minutes (the final baffle temperature was 28.5 C., while the contents at the bottom were at 22.2 C.). A sample was taken, and then the reactor was charged with Ethanol 3A (12.35 Kg, 268 mol) over 55 minutes. After the ethanol was charged, a sample was taken. The mixture was then stirred for 65 minutes. A sample taken after the first 30 minutes of the stirring indicated that 2.8% of the N-(2-hydroxyacetyl)-5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole product (12) remained in solution, and a sample taken after 60 minutes of the stirring indicated that 3.4% of the N-(2-hydroxyacetyl)-5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl) pyrazole product (12) was in solution. The mixture was next heated to reflux over 1 hour and 2 minutes, and then maintained at reflux for 4 hours. Supernatant and solid samples were collected every 30 minutes. After the 4 hours of refluxing, the mixture was cooled to 5 C. at a rate of 0.25 C./minute, and then maintained at that temperature overnight. The resulting product was filtered, providing 17.46 Kg of filtrate. The cake was washed with ethanol 3A (2×3.14 Kg (68.3 mol). The washe... |
With 1,8-diazabicyclo[5.4.0]undec-7-ene; In xylene; butan-1-ol; at 25 - 145℃;Heating / reflux; | [0412] This reaction was conducted in a round bottom flask reactor equipped with a half-moon shaped paddle, thermocouple, oil bath, condenser, and nitrogen adapter. The reaction was monitored using HPLC. 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10) (60 g, 0.177 moles) from Part E, <strong>[7397-62-8]butyl glycolate</strong> (11) (59.97 g, 58.86 ml, 0.454 moles, 2.57 equivalents relative to moles of <strong>[7397-62-8]butyl glycolate</strong> (11), 95% purity, from Fluka), 1,8-diazabicyclo[5.4.0]undec-7-ene (?DBU?, 2.69 g, 2.64 ml, 0.01 moles, 0.1 equivalents relative to moles of <strong>[7397-62-8]butyl glycolate</strong> (11), 98% purity, from Aldrich), and xylenes (180 ml, 98.5% purity, from Aldrich) were charged to the reactor. This resulted in a very thick slurry. Mixing was slowly initiated, and then increased gradually while also initiating heating. The mixture was heated to reflux (135-140 C.), and then maintained at reflux for 4 h while monitoring the reaction using HPLC. After conversion of the ceased 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10) (when only 2-4 area % of the 5-(4-piperidyl)-4-(4-pyrimidinyl)-3-(4-chlorophenyl)pyrazole (10) remains), the mixture was cooled to 100 C. 1-BuOH (120 ml, 99.8%, HPLC grade, Aldrich) was then charged to the reactor. The resulting mixture was heated at 125 C. for 5 min, and then cooled to 25 C. The resulting solids were isolated by filtration using a fritted funnel, and the mother liquor was used to aid in removal of the slurry from the reactor. The resulting solids were washed (in a displacement wash) with ethyl acetate (180 ml) twice, keeping the washes separate (the mother liquor was brown, the first wash contained some color, and the second was nearly clear). Afterward, the solids were air dried on the filter to yield product in 92-94% yield. HPLC area %>98-99%. The above HPLC monitoring was carried out using an HP 1100 system and the following gradient: 80% water/acetonitrile to 100% acetonitrile (in 8 min then hold for 2 min with 100% acetonitrile) with both water and acetonitrile containing 0.1% TFA. The column used was a Zorbax XDB-C8 column (part No. 993967.906; 4.6 mm×15 cm). The column temperature was 50 C. The wavelength used was 254 nm. Samples were typically prepared by adding one drop to 1 ml of methanol/methylene chloride solution (1:1 by volume). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70 - 80% | D. Preparation of N-(2-hydroxyacetyl)-5-(4-piperidyl)-3-(phenyl)pyrazole compound: Cl Cl /N I/_ N Bu glycolate 5. 0 eq N N N F NtNH NaOEt/EtOH N. ETOH H neutral N- (2-hydroxyacetyl)-5- unprotected (4-piperidyl)-3- (phenyl) pyrazole piperidylpyrazole (compound 11) (compound 8) [0157] The neutral unprotected piperidylpyrazole (2 kg, 5.59 moles) was mixed with 15L of absolute ethanol and 3.7 kg (28 moles, 5 equivalent) <strong>[7397-62-8]butyl glycolate</strong> at ambient temperature. 20% sodium ethoxide solution (1.8 kg, 1 equivalent) was added to this mixture and the resulting solution was heated to 79-81 C for a period of 4 hours. Afterwards the solution was cooled to about 5 C and approximately 2.36 kg of crude product and the corresponding sodium salt were isolated. This crude solid was resuspended in 9.4 L of ethanol and heated to about 40 C. Concentrated HCI (1.3 kg, about 2.4 equivalent) was added via an addition funnel in about 10 minutes and a heat kick was observed. Water (15.7 kg) was then added at such a rate to maintain the pot temperature of 40 C. After about 20% of water added a clear light brown solution was obtained. Afterwards the solution was slowly cooled to 0 C and the solid filtered, washed four times with 3.8 kg of water and dried to give desired hydrated product (containing about 5% water) in yield of 70-80%. | |
70 - 80% | D. Preparatio77 of N (2-hydroxyacetyl)-5- (4-piperidyl)-3- (phenyl) pyrazole conapoufad :; Ci ci ON Bu glycolate 5. 0 eq. 1 ZON / N N NaOEt/EtOH NN NH N 0 neutral N- (2-hydroxyacetyl)-5- unprotected (4-piperidyl)-3- (phenyl) pyrazole piperidylpyrazole (compound 11) (compound 8) [0095] The neutral unprotected piperidylpyrazole (2 kg, 5.59 moles) was mixed with 15L of absolute ethanol and 3.7 kg (28 moles, 5 equivalent) <strong>[7397-62-8]butyl glycolate</strong> at ambient temperature. 20% sodium ethoxide solution (1.8 kg, 1 equivalent) was added to this mixture and the resulting solution was heated to 79-81 C for a period of 4 hours. Afterwards the solution was cooled to about 5 C and approximately 2.36 kg of crude product and the corresponding sodium salt were isolated. This crude solid was resuspended in 9.4 L of ethanol and heated to about 40 C. Concentrated HCl (1.3 kg, about 2.4 equivalent) was added via an addition funnel in about 10 minutes and a heat kick was observed. Water (15.7 kg) was then added at such a rate to maintain the pot temperature of 40 C. After about 20% of water added a clear light brown solution was obtained. Afterwards the solution was slowly cooled to 0 C and the solid filtered, washed four times with 3.8 kg of water and dried to give desired hydrated product (containing about 5% water) in yield of 70-80%. | |
To a 3-neck, 50 mL flask (equipped with a thermocouple, magnetic stirrer, heating mantle, reflux condenser, and N2 purge) was added the intermediate (4) from Part B (1.0 g, 2.79 mmol), ethylene glycol (7.0 g), [1,] 8-diazabicyclo [5.4. 0] undec-7-ene ("DBU", 42 mg, 0.28 mmol, 0.1 equivalents relative to the intermediate (4) ), and <strong>[7397-62-8]butyl glycolate</strong> (5) (1.1 g, 8. [38] mmol, 3.0 equivalents relative to the intermediate (4) ). The resulting white slurry was heated to [80C,] and then stirred at this temperature for 4.9 hr. Although the slurry initially formed a light yellow solution during this heating, it formed a clear solution after 40 min of heating. Following the 4.9 hr heating period, deionized water was added over a 15 min period in an amount such that the mixture became slightly turbid. During this water addition, the temperature was maintained at [80C.] The resulting mixture was stirred for another hour at this temperature, and then allowed to cool naturally to room temperature. The resulting precipitate was filtered, washed with water [(2X10] mL), and air-dried for 1.3 hr to afford 1.10 g of light yellow crystals. Liquid chromatography analysis comparing these crystals with a pre-formed standard indicated the formation of the desired product (6). |
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