Structure of 81224-16-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 81224-16-0 |
Formula : | C9H8BrNO |
M.W : | 226.07 |
SMILES Code : | COC1=CC=C(Br)C2=C1C=CN2 |
MDL No. : | MFCD04037872 |
InChI Key : | WWKHWWGUJPWWDF-UHFFFAOYSA-N |
Pubchem ID : | 3695499 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H317 |
Precautionary Statements: | P280 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.11 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 52.49 |
TPSA ? Topological Polar Surface Area: Calculated from |
25.02 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.15 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.71 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.94 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.95 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.17 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.58 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.44 |
Solubility | 0.0825 mg/ml ; 0.000365 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.89 |
Solubility | 0.292 mg/ml ; 0.00129 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.27 |
Solubility | 0.0121 mg/ml ; 0.0000537 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.75 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.61 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran;Inert atmosphere; | To a flame-dried flask containing 10a5 (50.0 mg, 0.233 mmol) in anhyd. THF (600 muL), added oxalyl chloride (97 muL, 1.11 mmol, 5 equiv) and let stir under an atmosphere of N2 until TLC (5:1 hexanes/EtOAc) indicated consumption of starting material (5-12 hr, depending on scale). All volatiles were removed by rotoevaporation and resulting green residue was immediately suspended in anhyd. THF (1 mL), followed by the addition of N-Boc piperazine6 (52 mg, 0.28 mmol, 1.2 equiv) and DIPEA (78 muL, 2 equiv). Resulting mixture was stirred under an atmosphere of N2 at RT for 12 hr. and then at reflux for 30 min (if needed) when TLC (5:1 hexanes/EtOAc) indicated reaction completion. Reaction was allowed to cool to RT, poured into H2O (10 mL) and extracted with EtOAc (3×10 mL). The combined organic layers were dried over anhyd. MgSO4, filtered, and all solvents were evaporated. Crude 18 was purified by flash chromatography (CombiFlash Automated Chromatographer, 12 g column, dryloaded with 4 g pre-packed dry loading column. Run using 100% Hexanes to 50% EtOAc:Hexanes gradient over 30 column volumes, followed by EtOAc flush) to yield 18 as a light brown powder (78 mg, 75%). 1H NMR (400 MHz, CDCl3) delta 9.44 (s, 1H), 7.94 (d, J=3.1, 1H), 7.28 (d, J=8.5, 1H), 6.56 (d, J=8.5, 1H), 3.90 (s, 3H), 3.71 (m, 2H), 3.60-3.51 (m, 2H), 3.46 (m, 4H), 1.47 (s, 9H). (ES+) m/z (M+H)+ 466; (M+Na)+ 488; Rt=1.34. 5. US PATENT: US200300692456. Faust, A.; Waschkau, B.; Waldeck, J.; Holtke, C.; Breyholtz, H.; Wagner, S.; Kopka, K.; Heindel, W.; Schafer, M.; Bremer, C. Bioconjug. Chem. 2008, 19, 1001-1008. | |
In tetrahydrofuran; | FIGURE 88 shows the synthesis of GP120 binding bifunctional molecule CPD7-GN3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70.1% | In tetrahydrofuran; at -40℃; for 1.5h; | To a solution of 1-bromo-4-methoxy-2-nitrobenzene (33, 10.0 g, 43.1 mmol) in THF (100 mL)were added vinylmagnesium bromide (110 mL) dropwise at -40 C. The reaction mixture was sealedand stirred at -40 C for 1.5 hour. After warmed up to room temperature, the resulting solution wasquenched with sat. NH4Cl (120 mL) and extracted with ethyl acetate (2 × 150 mL). The combinedorganic layers were washed with brine (50 mL) and H2O (50 mL), dried over anhydrous Na2SO4,filtered and concentrated under reduced pressure. The residue was purified by silica gel column(petroleum ether/ethyl acetate = 2:1, v/v) to give 34 as a yellow solid (6.8 g, yield = 70.1%). LC-MS (ESI): m/z [M/M + 1]+ = 226.04/228.04. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59.8% | (a) 5-Methoxy-7-bromoindole. 2-Bromo-4-methoxy-aniline (5.0 g, 24.7 mmol) was added dropwise to a solution of boron trichloride in methylene chloride (1.0 M, 27 mL, 27 mmol) cooled with ice water. The reaction mixture was warmed to room temperature, stirred for 30 min, and chloroacetonitrile (4.55 mL, 29.7 mmol) and aluminum chloride (4.54 g, 27.2 mmol) added, followed by 1,2-dichloroethane (32 mL). The reaction mixture was heated to 70 C. to distill off methylene chloride, and then refluxed for 24 h. The mixture was cooled to 0-5 C., treated with 2.5 M HCl (44 mL) at 0~5 C. carefully, and then heated to 80 C. for 1 h until all solids dissolved. The aqueous layer was separated and extracted with methylene chloride. The combined organic layers were washed with water and brine, dried (sodium sulfate) and concentrated a yellow solid, that was used without further purification. The crude product was taken into dioxane (19 mL) and water (2.1 mL), and treated with sodium borohydride (0.46 g, 12.2 mmol) in portions. After 30 min at room temperature, all the starting material had been consumed, and the reaction mixture was heated to reflux overnight. The mixture was then cooled to room temperature, treated with 0.1 N hydrochloric acid (195 mL), diluted with ethyl acetate, treated with concentrated hydrochloric acid and trifluoroacetic acid and stirred until all the hydroxy-intermediate was converted to the final product. The reaction mixture was then extracted with ethyl acetate, and the extract was washed with sodium bicarbonate, water and brine, dried (Na2SO4) and concentrated. Column chromatography on silica gel (hexanes/ethyl acetate) gave 4-methoxy-7-bromoindole (1.5 g, 59.8%). 1H NMR (400 MHz, CDCl3) 3.77 (s, 3H), 6.47~6.49 (m, 1H), 6.99 (s, 2H), 7.17(m, 1H), 8.11 (br, 1H); MS (ES, m/z): C9H8BrNO: 228 (M+(79Br)+1), 226.01 (M+(81Br)+1), 224.03 (M+(79Br)-1), 226.04 (M+(81Br)-1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
24% | With hydrogenchloride; sodium borohydrid; boron trichloride;aluminium trichloride; In 1,4-dioxane; dichloromethane; water; | (a) 4-Methoxy-7-bromoindole. 2-Bromo-5-methoxy-aniline (4.4 g, 21.8 mmol) was added dropwise to a solution of boron trichloride in methylene chloride (1.0 M, 24 mL, 24 mmol) cooled with ice water. The reaction mixture was warmed to room temperature, stirred for 30 min, and chloroacetonitrile (4.01 mL, 26.2 mmol) and aluminum chloride (4.01 g, 24.0 mmol) were added, followed by 1,2-dichloroethane (28.5 mL). The reaction mixture was heated to 70 C. to distill off methylene chloride, and then heated to reflux for 24 hrs. After cooling to 0-5 C., the mixture was treated with 2.5 M HCl (38.4 mL) carefully, and then heated to 80 C. for 1 h until all solids dissolved. The aqueous layer was separated, extracted with methylene chloride and the combined extracts washed with water and brine, dried (sodium sulfate) and evaporated to a yellow solid, which was used without further purification. The crude product was taken into dioxane (37 mL) and water (4.2 mL), and treated with sodium borohydride (0.91 g, 24.0 mmol) in portions. After stirring at room temperature for 30 min, all the starting material was consumed and the reaction mixture was then heated to reflux for 14 hrs. After cooling to room temperature, the mixture was treated with concentrated HCl, and extracted with ethyl acetate. The organic extract was washed with water and brine; dried (sodium sulfate), and concentrated. Column chromatography on silica gel (hexanes/ethyl acetate) gave 4-methoxyl-7-bromoindole (1.2 g, 24%). 1H NMR (400 MHz, CDCl3) 3.94 (s, 3H), 6.44 (d, J=8.21 Hz, 1H), 6.73 (m, 1H), 7.17 (t, J=2.74 Hz, 1H), 7.22~7.26 (m, 1H), 8.32 (br, 1H); MS (ES, m/z): C9H8BrNO: 227.99 (M+(79Br)+1), 230.0(M+(81Br)+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65.8% | In N,N-dimethyl-formamide; at 140℃; | An oven-dried screw cap test tube was charged with a magnetic stir bar, CuCN (152.4 mg, 0.8mmol), then 34 (6.8 g, Y = 70.1%) in DMF (75 mL) was added into the tube. The reaction mixture wasstirred at 140 C overnight. After cooled down to room temperature, the resulting solution wasfiltered through Celite. The filtrate was diluted with ethyl acetate (100 mL) and washed withsaturated NaHCO3 solution (30 mL), water (30 mL) and brine (30 mL). The organic phase was driedover anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purifiedby silica gel column (petroleum ether/ethyl acetate = 1:1, v/v) to give 35 as a yellow solid (3.4 g, yield %). LC-MS (ESI): m/z [M + 1]+ = 173.10. |
A109060 [328400-86-8]
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