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CAS No. : | 81633-29-6 | MDL No. : | MFCD00052622 |
Formula : | C8H11N3O2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | YBFVMJRSZCVJJP-UHFFFAOYSA-N |
M.W : | 181.19 | Pubchem ID : | 459813 |
Synonyms : |
|
Num. heavy atoms : | 13 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.38 |
Num. rotatable bonds : | 3 |
Num. H-bond acceptors : | 4.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 47.49 |
TPSA : | 78.1 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.07 cm/s |
Log Po/w (iLOGP) : | 1.52 |
Log Po/w (XLOGP3) : | 0.47 |
Log Po/w (WLOGP) : | 0.55 |
Log Po/w (MLOGP) : | 0.06 |
Log Po/w (SILICOS-IT) : | 0.78 |
Consensus Log Po/w : | 0.68 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.4 |
Solubility : | 7.16 mg/ml ; 0.0395 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.68 |
Solubility : | 3.79 mg/ml ; 0.0209 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -2.16 |
Solubility : | 1.25 mg/ml ; 0.0069 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.85 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H317-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrazine hydrate |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium ethanolate |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With potassium hydroxide In methanol for 5h; Heating; | |
85% | Stage #1: 2-amino-4-methylpyrimidine-5-carboxylic acid ethyl ester With water; sodium hydroxide In tetrahydrofuran; ethanol at 60℃; Stage #2: With hydrogenchloride In tetrahydrofuran; water | 18 Example 18 [0164] To a suspension of ethyl-2-amino-4-methylpririmidine-5-carboxylate (500 mg, 2.76 mmol) in Ethanol (50 mL)/THF(50 mL) was added a solution of sodium hydroxide in water (2N, 2.5 mL, 5.00 mmol) at room temperature.. The mixture was stirred at 60° C overnight. IN aqueous HCl was added until pH was about 3. The resulting solution was concentrated under reduced pressure and a large amount of white solids precipitated. The solids were collected by filtration and washed by water and then hexanes to provide compound 18 (360 mg 85% yield). IH NMR (500 MHz, DMSO-d6) δ 12.65 (br, IH), 8.60 (s, IH), 7.35 (br, 2H), 2.55 (s, 3H); ESI-MS: calcd for (C6H7N3O2) 153, found 154 (MH+), 152 ([M-H]-). |
85% | With water; sodium hydroxide In methanol at 20℃; | 3 Step 3: acid 43 To a solution of 42 (500 mg, 2.8 mrnoi) in MeOH (20 mL) and water (20 mL)is added NaOH (331 mg, 8.3 mrnoi). After stirring at room temperature overnight, themixture is concentrated and the residue is dissolved in water (10 rnL) and acidified to pH 1with concentrated aqueous HC1. The precipitale is collected by filtration and dried to give 43(330 mg, 85% yield). (MS: [M-1-HI 154.1) |
71% | With sodium hydroxide In tetrahydrofuran; methanol at 20℃; | |
With sodium hydroxide In ethanol | ||
Stage #1: 2-amino-4-methylpyrimidine-5-carboxylic acid ethyl ester With lithium hydroxide; water In tetrahydrofuran at 0 - 20℃; Alkaline aqueous solution; Stage #2: With hydrogenchloride In water Acidic aqueous solution; | 3.1 Ethyl 2-amino-4-methylpyrimidine-5-carboxylate (1.0 g, 5.5 mmol) was added to an aqueous solution of 1M LiOH (19 mL) at 0 °C. 20 mL of THF was added to the suspension and the reaction mixture was allowed to warm to ambient temperature overnight. The solvent was evaporated and the resulting aqueous solution was acidified to pH 1 by addition of 3M HCl. The precipitate was filtered off and rinsed with water followed by washing with ethyl acetate. The white solid was dried in a vacuum oven at 50 °C overnight to yield the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With sodium ethanolate In ethanol for 1h; Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With potassium hydroxide In ethanol; water for 0.5h; Heating; | |
79% | With sodium ethanolate In ethanol at 78 - 100℃; | |
Multi-step reaction with 2 steps 1: 10 h / Heating 2: potassium hydroxide / ethanol / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: 93 percent / KOH / methanol / 5 h / Heating 2: 83 percent / 2 h / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: ethanolic sodium ethylate 2: NH3 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With potassium <i>tert</i>-butylate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene In toluene at 100℃; for 16h; | Under N2, to a dry flask charged with 2-amino-4-methyl-pyrimidine-5-carboxylic acid ethyl ester (2.50 g, 13.8 mmol), 1,4-dibromobenzene (6.51 g, 27.6 mmol), ter-BuOK (2.02 g, 18.0 mmol), 4,5-bis(diphenylphosρhino)-9,9-dimethylxanthene (0.176 g, 0.304 mmol) and Pd2(dba)3 (0.126 g, 0.138 mmol) was added anhydrous toluene (100 mL). The mixture EPO was degassed and filled with N2 twice, and then was stirred at 100 0C for 16 h. After the mixture was cooled to room temperature, saturated aqueous NH4Cl solution (20 mL) and brine (50 mL) were added and the mixture was extracted with EtOAc/THF (3 X 60 mL, 5:1 v/v). The combined extracts were dried over anhydrous Na2SO4. After filtration through a silica gel plug the solvent was removed, and the residue was purified by recrystallization from EtOAc/hexanes to afford 2-(4-bromo-phenylamino)-4-methyl-pyrimidine-5-carboxylic acid ethyl ester as a pale yellow solid (2.80 g, 60%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: sodium hydroxide; water / ethanol; tetrahydrofuran / 60 °C 1.2: pH 3 2.1: thionyl chloride / 2 h / 80 °C 2.2: 0 - 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1.1: sodium hydroxide; water / ethanol; tetrahydrofuran / 60 °C 1.2: pH 3 2.1: thionyl chloride / 2 h / 80 °C 2.2: 0 - 20 °C 3.1: potassium carbonate; palladium diacetate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene / 1,4-dioxane / 0.12 h / 170 °C / Inert atmosphere; Microwave irradiation |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: pyridinium chlorochromate 2: trichlorophosphate / 0.5 h / 105 °C 3: ammonia / tetrahydrofuran / 0.75 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / 0.5 h / 105 °C 2: ammonia / tetrahydrofuran / 0.75 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With ammonia In tetrahydrofuran at 20℃; for 0.75h; | 5.3. Synthesis of compounds 4a and b General procedure: Compound 3a and b (1.9 mmol) was treated with THF saturated with ammonia gas (evolved by warming 30% aqueous ammonia solution) at room temperature for 45 min. The resulting reaction mixture was distilled under reduced pressure to remove excess THF and crude product was purified through crystallization to afford compound 4a and 4b. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | for 10h; Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | Stage #1: guanidine hydrochloride With sodium ethanolate for 0.5h; Stage #2: 2-ethoxymethylene-3-oxobutanoic acid ethyl ester for 1h; Heating; | |
82% | In ethanol |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
23% | With hydrogenchloride In tetrahydrofuran; 1,4-dioxane; dichloromethane at 0 - 80℃; for 8.5h; | 47.1 1,2-bis(trimethylsilyl)oxy)cyclobut-1-ene (100 mg, 0.434 mmol) was added to a solution of -2-amino-5-nitropyrimidine (62.4 mg, 0.347 mmol) in 1.0M HCl/dioxane (1 mL), dichloromethane (4 mL), THF (4 mL) at 0° C. After 30 mins, mixture was heated at 80° C. for 8 hrs TLC showed presence of starting material around 5% (TLC system 10% methanol in chloroform) as no further progress was seen in reaction solvent was removed under vacuum. Chromatography on silica gel (gradient 10-40% ethyl acetate in hexane) afforded to give (off white solid) pure monomer. Compound was characterized by LCMS, NMR, HPLC and IRYield=25 mg (23%)Mol. Wt. 249.2, In LCMS MH+ was seen at 250, HPLC purity 99.2%NMR1H-DMSO-d6:1.23-1.29 (m, 3H), 2.15-2.28 (m, 2H), 2.53 (s, 3H) 2.80-2.98 (m, 2H), 4.2-4.26 (q, 2H), 5.04-5.12 (m, 1H),8.68 (s, 1H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: sodium hydroxide / methanol; tetrahydrofuran / 20 °C 2: N-ethyl-N,N-diisopropylamine; benzotriazol-1-yloxyl-tris-(pyrrolidino)-phosphonium hexafluorophosphate / N,N-dimethyl-formamide / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55.5% | With methyl bromide; isopentyl nitrite at 85℃; for 4h; | 59 To a solution of ethyl 2-amino-4-methylpyrimidine-5-carboxylate (4.0 g, 22 mmol) inCHBr (66 mL) was added isopentyl nitrite (44 mL) and the mixture was stirred at 85°C for 4 h.The volatiles were removed and the residue was taken up by EtOAc (100 mL), which was washed by brine (100 mL x 2). The organic layer was dried over Na2SO4, concentrated and the residue was purified by silica gel flash column to give ethyl 2-bromo-4-methylpyrimidine-5- carboxylate (3.0 g, 55.5% yield) as a white solid. ‘H NMR (400 MHz, CDC13): 8.93 (s, 1H),4.41 (q, J= 7.2 Hz, 2H), 2.82 (s, 3H), 1.41 (t, J = 7.0 Hz, 3H). |
55.5% | With Bromoform; isopentyl nitrite at 85℃; for 4h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
800 mg | With sodium hydroxide In butan-1-ol at 120℃; for 2h; | 2 Step 2: pyrirnidine 42 To a solution of 41 (3 g, 16.2 mmoi) and guanidine hydrochloride (155 g,16.2 mrnoi) in n-butanoi (50 mL) is added NaOH (648 mg, 16.2 rnrnoi). After stirring at120 °C for 2 hours, the mixture is concentrated and the residue is dissolved in EA(100 mL), washed with water (50 mL) and brine (50 rnL), dried over anhydrous sodium sulfate, filtered. concentrated, and triturated with n-hexane (50 niL). The solid is collected by filtration, washed with hexane (5 rnL x 3), and dried to give 42 as a white solid (800 mg, 28% yield). (MS: IM-F-H 182.1) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: 20 °C 2: sodium hydroxide / butan-1-ol / 2 h / 120 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1.1: sodium hydroxide; water / methanol / 20 °C 2.1: isobutyl chloroformate; 4-methyl-morpholine / tetrahydrofuran / 0.17 h / -10 °C 2.2: 0.33 h / 0 - 20 °C |
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