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CAS No. : | 939986-65-9 | MDL No. : | MFCD09607731 |
Formula : | C5H2ClN3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | AJRPBTWNTZPVSO-UHFFFAOYSA-N |
M.W : | 139.54 | Pubchem ID : | 22498881 |
Synonyms : |
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Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P280-P305+P351+P338-P310 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H332-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; trichlorophosphate; | 6-Hydroxy-pyrimidine-4-carbaldehyde oxime (9.3 g, 67 mmol) was stirred in 37 ml POCl3 under N2 at 40 C. for 30 min, 60 C. for 30 min, and 80 C. for one h. N,N,-Dimethylaniline was added very slowly by syringe, and stirred for one h at 80 C. After cooling to 0 C., the mixture was poured into a separatory funnel containing 300 g of ice. The mixture was carefully swirled, then extracted with 500 ml t-BuOMe. The organic layer was washed with 1 N HCl (4*100 ml), then several times with NaHCO3, then brine. Acidic and basic aqueous layers were separately back-extracted with t-BuOMe, and the organics again washed with 1 N HCl, saturated aqueous NaHCO3, and brine. The combined organic layers were dried with Na2SO4 and concentrated by rotary evaporator. The residue was filtered through a pad of silica gel, applying in CH2Cl2 and eluding with 10:1 hexanes/t-BuOMe. Fractions were carefully concentrated to obtain 6-chloro-pyrimidine-4-carbonitrile as a (volatile) pale yellow, semi-crystalline solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With methylamine; In tetrahydrofuran; dichloromethane; | To <strong>[939986-65-9]6-chloro-pyrimidine-4-carbonitrile</strong> (1.37 g, 9.84 mmol) stirring in 10 ml THF under N2 was added a methylamine solution (2.0 M in THF, Aldrich) in aliquots, causing immediate precipitation. Reaction progress was monitored after addition of 5 ml methylamine solution, then 3 ml, then 2 ml. The mixture was concentrated and filtered through a pad of silica, eluding with 2%->5% MeOH in CH2Cl2 to obtain 6-methylamino-pyrimidine-4-carbonitrile as a pale yellow solid. MS: 135.0 (M+1); Calc'd. for C6H6N4-134.14. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; | To <strong>[939986-65-9]6-chloro-pyrimidine-4-carbonitrile</strong> (1.37 g, 9.84 mmol) stirring in 10 ml THF under N2 was added a methylamine solution (2.0 M in THF, Aldrich) in aliquots, causing immediate precipitation. Reaction progress was monitored after addition of 5 ml methylamine solution, then 3 ml, then 2 ml. The mixture was concentrated and filtered through a pad of silica, eluting with 2%->5% MeOH in CH2Cl2 to obtain 6-methylamino-pyrimidine-4-carbonitrile as a pale yellow solid. MS: 135.0 (M+1); Calc'd. for C6H6N4 - 134.14. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6-Hydroxy-pyrimidine-4-carbaldehyde oxime (9.3 g, 67 mmol) was stirred in 37 ml POCl3 under N2 at 40 C. for 30 min, 60 C. for 30 min, and 80 C. for one h. N,N,-Dimethylaniline was added very slowly by syringe, and stirredfor one h at 80 C. After cooling to 0 C., the mixture was poured into a separatory funnel containing 300 g of ice. The mixture was carefully swirled, then extracted with 500 ml t-BuOMe. The organic layer was washed with 1 N HCl (4*100 ml), then several times with NaHCO3, then brine. Acidic and basic aqueous layers were separately back-extracted with t-BuOMe, and the organics again washed with 1 N HCl, saturated aqueous NaHCO3, and brine. The combined organic layers were dried with Na2SO4 and concentrated by rotary evaporator. The residue was filtered through a pad of silica gel, applying in CH2Cl2 and eluting with 10:1 hexanes/t-BuOMe. Fractions were carefully concentrated to obtain 6-chloro-pyrimidine-4-carbonitrile as a (volatile) pale yellow, semi-crystalline solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 100℃; for 2h; | 1-[2-(Trifluoromethyl)-1 H-pyrrolo[2,3-b]pyridin-5-yl]methanamine (Intermediate 5, 100 mg, 0.465 mmol), <strong>[939986-65-9]6-chloro-4-pyrimidinecarbonitrile</strong> (Intermediate 8, 97 mg, 0.697 mmol) and DIPEA (0.162 mL, 0.929 mmol) were added together in N-methyl-2-pyrrolidone (2 mL) and the resulting mixture was heated at 100 C for 2 hours and allowed to cool to room temperature. The reaction mixture was diluted with ethyl acetate and washed with water and brine. The organic layer was separated, dried under magnesium sulfate and evaporated under reduced pressure. The residue was purified by MDAP. Product containing fractions were combined and evaporated under reduced pressure. The resulting solid was dried under high vacuum at 45 C for 18 hours to give the title compound as an off-white solid (32 mg);m/z (ES+) 319 (M+1 ); 1 H NMR (400 MHz, d6-DMSO): delta 12.90 (1 H, bs), 8.65-8.62 (1 H, m), 8.55 (1 H, bs), 8.45 (1 H, bs), 8.08 (1 H, bs), 7.05 (2H, bs), 4.71-4.69 (2H, d). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6-Hydroxy-4-pyrimidinecarboxamide (Intermediate 7, 563 mg, 4.05 mmol) was taken up in phosphorus oxychloride (3.9 ml_, 41.8 mmol) and the resulting mixture was heated under reflux for 18 hours. The reaction mixture was allowed to cool to room temperature and evaporated under reduced pressure. The residue was poured into ice cooled water, neutralised with 0.88 ammonia solution and extracted with ethyl acetate (x 3). The ethyl acetate layers were combined, dried under magnesium sulfate and evaporated under reduced pressure. The residue was purified by column chromatography (Biotage SP4) eluting with a gradient of 0-20 % ethyl acetate and iso-hexane. Product containing fractions were combined and evaporated under reduced pressure to give the title compound as a colourless oil (346 mg);1 H NMR (400 MHz, CDCI3): delta 9.15 (1 H, s), 7.74 (1 H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium carbonate; In 1,4-dioxane; water; at 110℃; for 18h;Inert atmosphere; | General procedure: To an oven-dried round-bottom flask containing tert-butyl 2-[(R)-5-bromo-2,3-dihydro-1H-inden-1-yl]-2,7-diazaspiro[3.5]nonane-7-carboxylate 3 (1.0 mmol) was added bis(pinacolato)diboron (1.1 mmol), potassium acetate (4.0 mmol) and 10 mL of anhydrous 1,4-dioxane. The resulting mixture was purged with N2 for three times. Pd(dppf)Cl2 (0.05 mmol) was added, the reaction mixture was purged with N2 again three times and heated under N2 at 110 C for 46 h. The course of the reaction was followed by TLC (5% MeOH in CH2Cl2) and LCMS. The reaction mixture was cooled to room temperature, and the aryl halide 5 (1.1 mmol)], Pd(dppf)Cl2 (0.05 mmol) and 3.5 mL of 2M aqueous solution of potassium carbonate (de-oxygenated by bubbling through N2 for 15 minutes before addition) were added. The reaction mixture was purged with N2 three times and then heated under N2 for 618 h at 110 C. The course of the reaction was followed by LCMS. The reaction mixture was cooled to room temperature, and the solvent removed under reduced pressure. The residue was partitioned between EtOAc (100 mL) and 1N NaOH solution (100 mL). The organic layer was washed with brine (100 mL), dried over Na2SO4 and the solvent was removed under reduced pressure to afford the crude product as a dark brown oil. The crude product was purified by silica gel chromatography, eluting with 010% MeOH in CH2Cl2 to afford the desired product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With potassium carbonate; In tetrahydrofuran; at 20℃; for 16h; | To a stirred solution of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> A-i (500 mg, 3.58 mmol) and methyl 3-hydroxybenzoate (550 mg, 3.62 mmol) in THF (12 ml), was added K2C03 (1.49 g, 10.75 mmol). The reaction mixture was stirred at RT for 16h. The mixture was concentrated under reduced pressure and the residue partitioned between water (100 mL) and DCM (50 mL). The organic layer was separated and the aqueous layer was re-extracted with DCM (20 ml). The combined organic layers were dried (MgSO4), filtered, and then concentrated under reduced pressure. The crude residue was purified (silica gel; eluting with 0-60% EtOAc in hexanes), to afford compound A-2 as a yellow solid (890 mg, 97%). LCMS Mass: 256.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | To a stirred solution of <strong>[67853-03-6]methyl 3-(hydroxymethyl)benzoate</strong> (1.31 g, 7.88 mmol) in THF (10 mL) at RT, was added Cs2CO3 (3.8 g, 11.7 mmol) and the mixture stirred for 20 mm. To this was added a solution of 6-chloropyrimidine-4-carbonitrile B-i (750 mg, 7.17 mmol) in THF (15 mL) and the mixture stirred at RT for 16 h. The mixture was partitioned between water (100 mL) and EtOAc (50 mL). The organic layer was separated and the aqueous layer was re-extracted with EtOAc (20 ml). The combined organic layers were dried (MgSO4), filtered, and then concentrated under reduced pressure. The crude residue was purified (silica gel; eluting with 0- 60% EtOAc in hexanes), to afford compound B-2 as an off-white solid (1.01 g, 52%). ?H NMR (300 MHz, DMSO-d6): 8.97 (m, 1H), 8.06 (m, 1H), 7.94 (m, 1H), 7.82 (m, 1H), 7.75 (m, 1H), 7.56 (m, 1H), 5.56 (s, 2H), 3.84 (s, 3H); LCMS Mass: 270.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; N,N-dimethyl-formamide; at 20 - 40℃; for 64h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> C-i (200 mg, 1.43 mmol), ethyl 3- aminobenzoate (247 mg, 1.65 mmol), DIEA (555 mg, 4.30 mmol), THF (2.5 mL), and DMF (2.5 mL), was stirred at RT for 48 h. Additional <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> C-i (133 mg, 0.95 mmol) and DIEA (369 mg, 2.86 mmol) were added and the mixture heated to 40 C for 16 h. The mixture was partitioned between water (100 mL) and EtOAc (50 mL). The organic layer was separated and the aqueous layer was re-extracted with EtOAc (20 ml). The combined organic layers were dried (MgSO4), filtered, and then concentrated under reduced pressure. The crude residue was purified (via silica gel; eluting with 0-60% EtOAc in hexanes; followed by trituration with Et20) to afford compound C-2 as a light yellow solid (135 mg, 3 5%). LCMS Mass: 269.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; at 20℃; for 20h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> D-1 (200 mg, 1.43 mmol), methyl 3- (aminomethyl)benzoate hydrochloride (333 mg, 1.65 mmol), DIEA (738 mg, 5.72 mmol), and THF (6 mL), was stirred at RT for 18 h. Additional <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> C-i (133 mg, 0.95 mmol) and DIEA (369 mg, 2.86 mmol) were added and the mixture stirred at RT for 2 h. The mixture was concentrated under reduced pressure and the residue partitioned between water (100 mL) and EtOAc (50 mL). The organic layer was separated and the aqueous layer was re-extracted with EtOAc (20 ml). The combined organic layers were dried (MgSO4), filtered, and then concentrated under reduced pressure. The crude residue was purified (via silica gel; eluting with 0-60% EtOAc in hexanes; followed by trituration with a mixture of Et20 and EtOAc) to afford compound D-2 as a light yellow solid (270 mg, 70%). LCMS Mass: 269.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 18h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> E-1 (100 mg, 0.717 mmol), 3- methylaminomethyl benzoic acid methyl ester hydrochloride (155 mg, 0.7 17 mmol), DIEA (277 mg, 2.15 mmol), and DMF (1 mL), was stirred at RT for 18 h. The mixture was concentrated under reduced pressure and the residue partitioned between water (50 mL) and EtOAc (10 mL). The organic layer was separated and the aqueous layer was re-extracted with EtOAc (2 x 10 ml). The combined organic layers were dried (Na2SO4), filtered, and then concentrated under reduced pressure. The crude residue was purified (via silica gel; eluting with 0-50% EtOAc in hexanes) to afford compound E-2 as a white solid (143 mg, 7 1%). LCMS Mass: 283.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In tetrahydrofuran; at 20℃; for 16h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> 1 (50 mg, 0.3 58 mmol), 4-fluorophenol (44 mg, 0.394 mmol), K2C03 (140 mg, 1.0 mmol), and THF (2 mL), was stirred atRT for 16 h. The mixture was concentrated under reduced pressure, and the residue partitioned between water (25 mL) and DCM (25 mL). The organic layer was separated, dried over Na2SO4, filtered, and the filtrate concentrated under reduced pressure. The residue was purified (silica gel; eluting with 0-100% EtOAc in hexanes), to afford compound 2 (77 mg, 100%) as a white solid. LCMS Mass:216.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The free base form of the title compound (1-2) was prepared using the procedure for Example 1, using 3-phenoxyphenol and DMF as solvent in Step 1. The free base was converted to the hydrochloride salt, using 2M HC1 in ether. LCMS Mass: 294.0 (M+1).; A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> 1 (50 mg, 0.3 58 mmol), 4-fluorophenol (44 mg, 0.394 mmol), K2C03 (140 mg, 1.0 mmol), and THF (2 mL), was stirred atRT for 16 h. The mixture was concentrated under reduced pressure, and the residue partitioned between water (25 mL) and DCM (25 mL). The organic layer was separated, dried over Na2SO4, filtered, and the filtrate concentrated under reduced pressure. The residue was purified (silica gel; eluting with 0-100% EtOAc in hexanes), to afford compound 2 (77 mg, 100%) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
66% | With 1-methyl-pyrrolidin-2-one; In tetrahydrofuran; at 20℃; for 12h; | To a stirred solution of compound 4 (200 mg, 0.8 mmol) in N-methyl-2-pyrrolidone (5 mL) were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (123 mg, 0.88 mmol) and K2C03 (222 mg, 1.61 mmol). The mixture was stirred at RT for 12 h. The reaction mixture was diluted with water (20 mL) and stirred vigorously for 10 mm. The obtained solid was filtered and dissolved in CH2C12 (40 mL). The organic layer was dried over Na2SO4, filtered and concentrated under reduced pressure. The crude residue was purified via trituration with n-pentane (2 x 5 mL) to afford compoundS (187 mg, 66%) as an off white solid. ?HNMR (500 IVIFIz, CDC13): 8.82 (s, 1H), 7.35-7.30 (m, 2H), 6.84 (d, J= 8.1 Hz, 1H), 6.76 (d, J= 8.1 Hz, 1H), 4.69 (s, 2H), 4.25 (q, J = 7.0 Hz, 2H), 2.79-2.74 (m, 2H), 2.71-2.66 (m, 2H), 1.30 (t, J= 7.1 Hz, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With potassium carbonate; In N,N-dimethyl-formamide; at 55℃; for 2.5h; | To a stirred solution of compound 3 (100 mg, 0.352 mmol) in DMF (2 mL) were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (54 mg, 0.387 mmol) and K2C03 (146 mg, 1.06 mmol). Themixture was heated at 55 C for 2.5 h. The mixture was cooled to RT and concentrated underreduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 4 (135 mg, 99%) as an off white solid. LCMS Mass: 388.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With potassium carbonate; In N,N-dimethyl-formamide; at 50℃; for 2h; | To a stirred mixture of compound 3 (58 mg, 0.358 mmol), 6-chloropyrimidine-4- carbonitrile (50 mg, 0.358 mmol), and DMF (2 mL), was added K2C03 (148 mg, 1.07 mmol). The mixture was heated at 50 C for 2 h. The mixture was cooled to RT and then concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 4 (70 mg, 74%) as an amber oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
33% | With 1-methyl-pyrrolidin-2-one; potassium carbonate; In tetrahydrofuran; at 150℃; for 12h;Microwave irradiation; | To a stirred solution of compound 3 (130 mg, 0.5 mmol) inN-methyl-2-pyrrolidone (5 mL) were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (70 mg, 0.5 mmol) and K2C03 (139 mg, 1.01 mmol). The reaction mixture was heated in a Biotage microwave synthesizer at 150 C for 1 h. The reaction mixture was diluted with water (20 mL) and extracted with EtOAC (2 x 25 mL). The combined organic extracts were washed with brine (15 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified (silica gel; eluting 30% EtOAc in hexanes), to afford compound 4 (60 mg, 33%) as an off-white solid.?HNMR (500 IVIFIz, DMSO-d6): 8.85 (d, J= 0.9 Hz, 1H), 7.99 (d, J 0.9 Hz, 1H), 7.33-7.25 (m, 2H), 7.14 (t, J 8.0 Hz, 1H), 6.88 (d, J= 7.8 Hz, 1H), 6.17 (d, J= 3.2 Hz, 1H),5.18 (s, 2H), 3.53-3.49 (m, 2H), 3.44-3.40 (m, 2H), 1.63-1.54 (m, 4H), 1.47-1.43 (m, 2H); LCMS Mass: 362.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With 1-methyl-pyrrolidin-2-one; potassium carbonate; at 20℃; for 12h; | j00356j To a stirred solution of compound 3 (1 g, 3.57 mmol) in N-methyl-2-pyrrolidone (2 mL) at RT, were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (55 mg, 3.93 mmol) and K2C03 (986 mg, 7.14 mmol). The mixture was stirred at RT for 12 h. The reaction mixture was diluted with water (40 mL) and extracted with Et20 (2 x 50 mL). The combined organic extracts were washed with brine (25 mL), dried over Na2504, filtered and concentrated under reduced pressure. The residue was purified (silica gel; eluting with 20% EtOAc in Hexanes), to afford compound 4 (1 g, 76%) as pale brown solid. ?H NIVIR (500 MHz, DMSO-d6): 8.84 (s, 1H), 7.98 (s, 1H), 7.61-7.41 (m, 5H), 7.24-7.11 (m, 3H), 6.88 (d, J= 7.5 Hz, 1H), 6.16-6.14 (m, 1H), 4.77 (br s, 2H), 3.19 (br s, 3H); LCMS Mass: 384.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With caesium carbonate; In N,N-dimethyl-formamide; at 0 - 20℃; for 12h; | To a stirred solution of compound 4 (260 mg, 1.08 mmol) in DMF (5 mL) at 0 C, were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (303 mg, 2.17 mmol) and Cs2CO3 (706 mg, 2.l7mmol). The reaction mixture was gradually warmed to RT and stirred for an additional 12 h. The reaction mixture was quenched with ice water (25 mL) and extracted with EtOAc (2 x 30 mL). The combined organic extracts were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified (silica gel; eluting with 45% EtOAc in Hexanes), to afford compound 5 (350 mg, 94%) as pale yellow sticky solid. ?H NIVIR (500 MHz, DMSO-d6): 8.84 (s, 1H), 7.99 (s, 1H), 7.52 (d, J= 8.7 Hz, 1H), 7.43 (d, J 2.9 Hz, 1H), 7.23 (t, J= 8.1 Hz, 1H), 6.94 (d, J= 8.1 Hz, 1H), 6.23 (d, J 3.5 Hz, 1H), 4.64 (t, J 7.0 Hz, 2H), 3.70 (t, J= 7.2 Hz, 2H), 2.93 (s, 3H); LCMS Mass: 342.9 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In N,N-dimethyl-formamide; at 55℃; for 2.5h; | A stirred mixture of compound 4 (100 mg, 0.3 90 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (54 mg, 0.387 mmol), K2C03 (146 mg, 1.05 mmol) and DMF (2 mL), was heated at 55 C for 2.5 h. j00368j The reaction mixture was concentrated under reduced pressure and the residue purified (silica gel; eluting with 0-100% EtOAc in hexanes), to afford compound 5 (140 mg, 100%) as an amber oil. LCMS Mass: 358.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 7.5h; | A mixture of compound 4 (50 mg, 0.186 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (34 mg, 0.242 mmol), K2C03 (52 mg, 0.373 mmol) and DMF (1 mL), was stirred at RT for 5 h. Additional K2C03 (26 mg, 0.188 mmol) was added and the mixture stirred for a further 2.5 h. The reaction mixture was partitioned between water (10 mL), brine (5 mL), aq 2M HC1 (5 mL), and EtOAc (10 mL). The organic layer was separated, dried over MgSO4, filtered, and the filtrate concentrated under reduced pressure. The residue was purified (silica gel; eluting with 0-35% EtOAc in hexanes), to afford compound 5 (69 mg, 100%) as a white solid. ?H NIVIR (300 MHz, DMSO-d6): 8.84 (m, 1H), 7.95 - 7.99 (m, 2H), 7.37 - 7.46 (m, 2H), 7.09 (m, 1H), 6.86 (m, 1H), 6.75 (m, 1H), 6.02 (m, 1H), 5.37 (s, 2H), 3.78 (s, 3H), 2.35 (s, 3H); LCMS Mass: 372.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 16h; | To a stirred solution of compound 3 (55 mg, 0.26 mmol) in DMF (1.5 mL) at RT, were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (36 mg, 0.26 mmol) and K2C03 (71 mg, 0.52 mmol). The mixture was stirred at RT for 16 h. The reaction mixture was diluted with water (15 mL) and extracted with EtOAc (2 x 20 mL). The combined organic extracts were washed with brine (10 mL), dried over Na2504 and concentrated under reduced pressure. The residue was purified via preparative HPLC (X-Select C-18 5 jiM 19 x 250mm column; eluting with 5-90% ACN/H20 containing 0.05% TFA, over 35 mm), to afford compound 4 (24 mg, 30%) as brown sticky solid. ?HNIVIR (500 IVIHz, DMSO-d6): 8.86 (s, 1H), 8.25 (s, 1H), 8.04 (s, 1H), 7.84 (s, 1H), 7.51 (d, J = 3.2 Hz, 1H), 7.45 (d, J 8.4 Hz, 1H), 7.25 (t, J 8.0 Hz, 1H), 6.99 (d, J= 7.5 Hz, 1H), 6.40 (d, J 3.2 Hz, 1H), 3.92 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With 1-methyl-pyrrolidin-2-one; potassium carbonate; at 20℃; for 12h; | To a stirred solution of compound 3 (80 mg, 0.3 mmol) in N-methyl-2-pyrrolidone (10 mL) at RT, were added K2C03 (82 mg, 0.6 mmol) and <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (62 mg, 0.45 mmol). The reaction mixture was stirred at RT for 12 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (2 x 20 mL). The combined organic extracts were washed with brine (10 mL), dried over Na2SO4, filtered, and concentrated under reduced pressure. The crude was purified via trituration with n-pentane (2 x 2 mL) to afford compound 4 (80 mg, 73%) as pale brown solid. ?H NIVIR (500MHz, DMSO-d6): 8.89 (d, J= 0.9 Hz, 1H), 8.00 (d, J= 0.9 Hz, 1H), 7.38 (t, J= 8.1 Hz, 1H), 7.15 (d, J 8.1 Hz, 1H), 6.97 (d, J 8.1 Hz, 1H), 4.32 (t, J 7.2 Hz, 2H), 3.43 (brt, J 7.4 Hz, 2H), 3.09 (s, 3H), 2.66-2.60 (m, 2H), 2.5 1-2.49 (m, 2H); LCMS Mass: 372.9 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With caesium carbonate; In N,N-dimethyl-formamide; at 0℃; for 12h; | To a stirred solution of compound 4 (550 mg, 1.89 mmol) in DMF (15 mL) at 0 C, were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (529 mg, 3.78 mmol) and Cs2CO3 (1.23 g, 3.78 mmol). The reaction mixture was stirred at 0 C for 12 h. The mixture was quenched with ice cold water (20 mL) and extracted with EtOAc (2 x 30 mL). The combined organic extracts were washed with brine (20 mL), dried over Na2 SO4, filtered, and concentrated under reduced pressure. The residue was purified (silica gel; eluting with 3-5% EtOAc in hexanes), to afford compound 5 (600 mg, 80%) as pale yellow oil. ?H NIVIR (500MHz, DMSO-d6): 8.86 (d, J= 0.9 Hz, 1H), 7.83 (d, J= 1.2 Hz, 1H), 7.47 (d, J 8.4 Hz, 1H), 7.33 (d, J 3.2 Hz, 1H), 7.17 (t, J 8.0 Hz, 1H), 6.89 (d, J= 7.5 Hz, 1H), 6.17 (d, J 2.9 Hz, 1H), 4.30 (t, J 5.2 Hz, 2H), 3.89 (t, J = 5.2 Hz, 2H), 0.73 (s, 9H), 0.21 (s, 6H); LCMS Mass: 395.1 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With 1-methyl-pyrrolidin-2-one; caesium carbonate; at 20℃; for 12h;Microwave irradiation; | To a stirred solution of compound 3 (55 mg, 0.29 mmol) inN-methyl-2-pyrrolidone (5 mL) at RT, were added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (60 mg, 0.43 mmol) and Cs2CO3 (189 mg, 0.58 mmol), and the mixture was stirred for 12 h. The reaction mixture was diluted with water (10 mL) and extracted with EtOAc (2 x 15 mL). The combined organic extracts were washed with brine (10 mL), dried over Na2SO4, filtered, and concentrated under reduced pressure. The crude was purified via trituration with n-pentane (2 x 2 mL) to afford compound 4 (55 mg, 65%) as pale brown solid. ?HNMR (500MHz, DMSO-d6): 8.85 (d, J 0.9 Hz, 1H), 8.00 (d, J= 0.9 Hz, 1H), 7.77 (d, J= 3.2 Hz, 1H), 7.56 (d, J 8.4 Hz, 1H), 7.23 (t, J 8.0 Hz, 1H), 6.95 (d, J= 7.5 Hz, 1H), 6.32 (d, J= 3.2 Hz, 1H), 5.86-5.78 (m, 1H), 5.05 (t, J 7.4 Hz, 2H), 4.95 (t, J= 6.7 Hz, 2H); LCMS Mass: 293.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21% | With potassium carbonate; In N,N-dimethyl-formamide; at 50℃; for 72h; | A mixture of indole 2 (300 mg, 1.15 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (180 mg, 1.29 mmol), K2C03 (220 mg, 1.59 mmol), THF (1.5 mL), and DMF (2.5 mL), was stirred atRT for 36 h then heated at 50 C for 36 h. The mixture was partitioned between brine and EtOAc. The organic layer was separated and the aq. further extracted with EtOAc. The combined organic layers were dried (MgSO4), filtered, and concentrated under reduced pressure. The residue was purified (silica gel; eluting with 0 - 40% EtOAc in Hexanes), to afford compound 3 (88 mg, 21%) as a solid. LCMS Mass: 365.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With potassium carbonate; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 36h; | A mixture of <strong>[2380-86-1]6-hydroxyindole</strong> 1 (157 mg, 1.18 mmol), 6-chloropyrimidine-4-carbonitrile (150 mg, 1.07 mmol), K2C03 (444 mg, 3.21 mmol), DMF (2 mL), and THF (4 mL), was stirred at RT for 20 h. Additional 6-chloropyrimidine-4-carbonitrile (30 mg, 0.2 15 mmol) was added and the mixture stirred at RT for a further 16 h. The mixture was concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 2 (190 mg, 56%) as a yellow solid. LCMS Mass: 237.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With dmap; caesium carbonate; at 50℃; for 16h; | A stirred mixture of 5-hydroxyindole 1 (95 mg, 0.7 17 mmol), 6-chloropyrimidine-4- carbonitrile (100 mg, 0.717 mmol), Cs2CO3 (466 mg, 1.43 mmol), and DMA (3 mL), was heated at 50 C for 16 h. The mixture was cooled to RT, then partitioned between water (30 mL) and EtOAc (15 ml). The organic layer was separated, and the aq. layer re-extracted with additional EtOAc (15 mL). The combined organic layers were washed with brine, dried over MgSO4, filtered, and the filtrate concentrated under reduced pressure. The residue was purified (via trituration with 20% MeOH in DCM), to afford compound 2 (95 mg, 56%) as a tan solid. LCMS Mass: 237.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The title compound (1-19) was prepared using the procedure for Example 17, using 4- hydroxyindole in Step 1. The free base form of the title compound was purified via silica gel (eluting with 1-20% MeOH in DCM) and then converted to the hydrochloride salt, using 2 M HC1 in ether. ?HNIVIR (300 IVIHz, DMSO-d6): 11.35 (s, 1H), 8.57 (s, 1H), 7.30-7.34 (m, 2H), 7.08 - 7.14 (m, 2H), 6.79 (m, 1H), 6.05 (m, 1H), 3.73 (s, 2H); LCMS Mass: 241.0 (M+1).; A mixture of 6-hydroxyindole 1 (157 mg, 1.18 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (150 mg, 1.07 mmol), K2C03 (444 mg, 3.21 mmol), DMF (2 mL), and THF (4 mL), was stirred at RT for 20 h. Additional <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (30 mg, 0.2 15 mmol) was added and the mixture stirred at RT for a further 16 h. The mixture was concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 2 (190 mg, 56%) as a yellow solid. To a stirred solution of compound 2 (40 mg, 0.169 mmol) in EtOAc (3 mL) and HOAc (0.3 mL) at RT, was added 10% Pd/C (10 mol%). The reaction mixture was stirred at RT under hydrogen (1 atmosphere pressure) for 1 h. The reaction mixture was filtered through a pad of celite, and the filtrate was concentrated under reduced pressure. The residue was purified via preparative HPLC (Waters XTerra Prep MS C-18 OBD 5 jiM 50 x 100mm column; eluting with 10-90% ACN/H20 containing 0.1% TFA, over 20 mm), followed by silica gel (eluting 0 to 100% EtOAc in hexanes), to afford compound 1-17 (3 mg, 7%) as a solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The title compound (1-60) was prepared using the procedure for Example 17, using 4- hydroxy- 1H-indazole in Step 1. The free base form of the title compound was purified via silica gel (eluting with 1-20% MeOH in DCM) and then converted to the hydrochloride salt, using 2 M HC1 in ether. ?H NIVIR (300 IVIHz, DMSO-d6): 8.78 (s, 1H), 8.60 (br s, 3H), 7.77 (s, 1H), 7.48 (m, 1H), 7.35-7.45 (m, 2H), 6.94(m, 1H), 4.10-4.20(m, 2H).; A mixture of 6-hydroxyindole 1 (157 mg, 1.18 mmol), 6-chloropyrimidine-4-carbonitrile (150 mg, 1.07 mmol), K2C03 (444 mg, 3.21 mmol), DMF (2 mL), and THF (4 mL), was stirred at RT for 20 h. Additional 6-chloropyrimidine-4-carbonitrile (30 mg, 0.2 15 mmol) was added and the mixture stirred at RT for a further 16 h. The mixture was concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 2 (190 mg, 56%) as a yellow solid. LCMS Mass: 237.0 (M+1).To a stirred solution of compound 2 (40 mg, 0.169 mmol) in EtOAc (3 mL) and HOAc (0.3 mL) at RT, was added 10% Pd/C (10 mol%). The reaction mixture was stirred at RT under hydrogen (1 atmosphere pressure) for 1 h. The reaction mixture was filtered through a pad of celite, and the filtrate was concentrated under reduced pressure. The residue was purified via preparative HPLC (Waters XTerra Prep MS C-18 OBD 5 jiM 50 x 100mm column; eluting with 10-90% ACN/H20 containing 0.1% TFA, over 20 mm), followed by silica gel (eluting 0 to 100% EtOAc in hexanes), to afford compound 1-17 (3 mg, 7%) as a solid. ?H NIVIR (300 IVIFIz, MeOH-d4): 8.76 (m, 1H), 7.61 (m, 1H), 7.29 (m, 1H), 7.18 (m, 1H), 6.94 (m, 1H), 6.80 (m, 1H), 6.49 (m, 1H), 4.22 (s, 2H); LCMS Mass: 241.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With sodium hydride; In N,N-dimethyl-formamide; at 20℃; for 0.416667h; | A solution of <strong>[709608-85-5]4-(hydroxymethyl)-1H-indazole</strong> 1 (233 mg, 1.57 mmol), 6-chloropyrimidine-4-carbonitrile (200 mg, 1.43 mmol), and DMF (4 mL) was added dropwise at RT to NaH (57 mg of a 60% dispersion in mineral oil, 1.43 mmol). The mixture was stirred at RT for 25 mm. The mixture was partitioned between aq HC1, brine, and EtOAc. The organic layer was separated, dried (Na2504), filtered, and concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 2 (162 mg, 45%) as a yellow solid. LCMS Mass: 252.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The title compound (1-101) was prepared using the procedure for Example 17, using 5- hydroxy-3,4-dihydro-2-(1H)-quinoline in Step 1. The free base form of the title compound was purified via silica gel (eluting with 0-20% MeOH in DCM) and then converted to the methanesulfonate salt, using methanesulfonic acid in DCM. LCMS Mass: 271.0 (M+1).; A mixture of 6-hydroxyindole 1 (157 mg, 1.18 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (150 mg, 1.07 mmol), K2C03 (444 mg, 3.21 mmol), DMF (2 mL), and THF (4 mL), was stirred at RT for 20 h. Additional <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (30 mg, 0.2 15 mmol) was added and the mixture stirred at RT for a further 16 h. The mixture was concentrated under reduced pressure. The residue was purified (silica gel; eluting 0 to 100% EtOAc in hexanes), to afford compound 2 (190 mg, 56%) as a yellow solid. To a stirred solution of compound 2 (40 mg, 0.169 mmol) in EtOAc (3 mL) and HOAc (0.3 mL) at RT, was added 10% Pd/C (10 mol%). The reaction mixture was stirred at RT under hydrogen (1 atmosphere pressure) for 1 h. The reaction mixture was filtered through a pad of celite, and the filtrate was concentrated under reduced pressure. The residue was purified via preparative HPLC (Waters XTerra Prep MS C-18 OBD 5 jiM 50 x 100mm column; eluting with 10-90% ACN/H20 containing 0.1% TFA, over 20 mm), followed by silica gel (eluting 0 to 100% EtOAc in hexanes), to afford compound 1-17 (3 mg, 7%) as a solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With potassium carbonate; In dichloromethane; N,N-dimethyl-formamide; at 20℃; for 1.5h; | A mixture of 6-chloropyrimidine-4-carbonitrile (250 mg, 1.79 mmol), methyl (3R)- pyrrolidine-3-carboxylate hydrochloride 1 (356 mg, 2.15 mmol), K2C03 (495 mg, 3.58 mmol), DCM (6 mL), and DMF (4 mL) was stirred at RT for 1.5 h. The mixture was concentrated under reduced pressure. The residue was partitioned between water, brine, and EtOAc. The organic layer was separated and the aqueous layer re-extracted with EtOAc. The combined organic layers were washed with brine, dried (Na2SO4), filtered, and the filtrate concentrated under reduced pressure to afford compound 2 (402 mg, 97%) as a white solid. ?H NIVIR (300 IVIHz, DMSO-d6):8.54 (s, 1H), 7.24 (m, 1H), 3.35 - 3.80 (m, 8H), 2.05 - 2.35 (m, 2H); LCMS Mass: 233.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With potassium carbonate; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 16h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (153 mg, 1.10 mmol), Nphenylpiperidine-4-carboxamide hydrochloride 1 (221 mg, 0.914 mmol), K2C03 (253 mg, 1.83 mmol), THF (5 mL), and DMF (4 mL) was stirred at RT for 16 h. The mixture was concentrated under reduced pressure. The residue was partitioned between water, brine, and EtOAc. The organic layer was separated and the aqueous layer re-extracted with EtOAc. The combined organic layers were washed with brine, dried (Na2SO4), filtered, and the filtrate concentrated under reduced pressure to afford compound 2 (274 mg, 81%) as a white solid. LCMS Mass:308.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With potassium carbonate; N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 16h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (120 mg, 0.859 mmol), 1- benzoylpiperazine hydrochloride 1 (221 mg, 0.919 mmol), K2C03 (237 mg, 1.78 mmol), DIEA (221 mg, 1.78 mmol) THF (3 mL), and DMF (3 mL) was stirred at RT for 16 h. The mixture was concentrated under reduced pressure. The residue was partitioned between water, brine, and EtOAc. The organic layer was separated and the aqueous layer re-extracted with EtOAc. The combined organic layers were washed with brine, dried (Na2SO4), filtered, and the filtrate concentrated under reduced pressure to afford compound 2 (243 mg, 97%) as a light yellow solid. ?HNMR (300 MFIz, DMSO-d6): 8.58 (m, 1H), 7.57 (m, 1H), 7.40-7.50 (m, 5H), 3.60- 3.90 (br m, 6H), 3.30 - 3.50 (br m, 2H); LCMS Mass: 294.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With potassium carbonate; N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 16h; | A mixture of <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (120 mg, 0.859 mmol), Nphenylpiperazine-1-carboxamide hydrochloride 1 (228 mg, 0.944 mmol), K2C03 (237 mg, 1.78mmol), DIEA (221 mg, 1.78 mmol) THF (3 mL), and DMF (3 mL) was stirred at RT for 16 h.The mixture was concentrated under reduced pressure. The residue was partitioned between water, brine, and EtOAc. The organic layer was separated and the aqueous layer re-extracted with EtOAc. The combined organic layers were washed with brine, dried (Na2SO4), filtered, and the filtrate concentrated under reduced pressure to afford compound 2 (253 mg, 96%) as a light yellow solid. ?HNMR (300 MFIz, DMSO-d6): 8.62 (m, 1H), 8.58 (m, 1H), 7.62 (m, 1H), 7.41 - 7.48 (m, 2H), 7.20- 7.26 (m, 2H), 6.93 (m, 1H), 3.65 -3.80 (br m, 4H), 3.50 -3.60 (m, 4H); LCMS Mass: 309.0 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With N-ethyl-N,N-diisopropylamine; In acetonitrile; at 80℃; for 2h;Sealed tube; | To a suspension of (S)-(5 -(3,5 -difluorophenyl)-4,5-dihydro- 1H-pyrazol- 1 -yl)(piperidin-4- yl)methanone, 1R-(-)-camphor-10-sulphonic acid salt (300 mg, 0.57 mmol) in MeCN (30mL) was added <strong>[939986-65-9]6-chloropyrimindine-4-carbonitrile</strong> (80 mg, 0.57 mmol) and DIPEA (0.25 mL,1.43 mmol) The vessel was sealed and heated at 80C for 2 h. The reaction minxture was evaporated in vacuo. This residue was purified by normal phase column chromatography [CyHI(EtOAc/EtOH 3:1) 100/0 to 70/301. A trituration into iPr2O afforded, after filtration, (S)-6-(4-(5 -(3 ,5-difluorophenyl)-4,5 -dihydro- 1H-pyrazole- 1 -carbonyl)piperidin- 1-yl)pyrimindine-4-carbonitrile (130 mg, 0.33 mmol, purity: 100 %, recovery: 58 %) as a light yellow powder. LCMS (m/z) 397 (M+H), retention time: 2.48 min LC/MS Method 1. ?H NMR (400 min-Tz, DMSO-d6) delta ppm 8.54 (s, 1H), 7.57 (s, 1H), 7.26 (s, 1H), 7.12 (tt, J9.4, 2.1 Hz, 1H), 6.84 (d, J=6.5 Hz, 2H), 5.34 (dd, J=12.0, 4.9 Hz, 1H), 4.47 (br.s, 2H), 3.49 (ddd, J=19.0, 12.0, 1.0 Hz, 1H), 3.43 (tt, J=11.4, 3.7 Hz, 1H), 3.13 (brs, 2H), 2.75 (ddd, J19.2,4.9, 1.5 Hz, 1H), 1.95 (d, J=12.7 Hz, 1H), 1.81 (d, J=12.7 Hz, 1H), 1.48 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
130 mg | With N-ethyl-N,N-diisopropylamine; In acetonitrile; at 80℃; for 2h;Sealed tube; | To a suspension of (S)-(5-(3,5-difluorophenyl)-4,5-dihydro-lH-pyrazol-l-yl)(piperidin-4- yl)methanone, lR-(-)-camphor-10-sulphonic acid salt (300 mg, 0.57 mmol) in MeCN (30 mL) was added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (80 mg, 0.57 mmol) and DIPEA (0.25 mL, 1.43 mmol) The vessel was sealed and heated at 80C for 2 h. The reaction mixture was evaporated in vacuo. This residue was purified by normal phase column chromatography [CyH/(EtOAc/EtOH 3: 1) 100/0 to 70/30]. A trituration into PnO afforded, after filtration (S)-6-(4-(5-(3,5-difluorophenyl)-4,5-dihydro-lH-pyrazole-l- carbonyl)piperidin-l-yl)pyrimidine-4-carbonitrile (130 mg, 0.33 mmol, purity: 100 %, recovery: 58 %) as a light yellow powder. LCMS (m/z) 397 (M+H)+, retention time: 2.48 min, LC/MS Method 1. NMR (400 MHz, DMSO- 6) delta ppm 8.54 (s, IH), 7.57 (s, IH), 7.26 (s, IH), 7.12 (tt, J=9.4, 2.1Hz, IH), 6.84 (d, J=6.5 Hz, 2H), 5.34 (dd, J=12.0, 4.9 Hz, IH), 4.47 (br.s, 2H), 3.49 (ddd, J=19.0, 12.0, 1.0 Hz, IH), 3.43 (tt, J=11.4, 3.7 Hz, IH), 3.13 (br s, 2H), 2.75 (ddd, J=19.2, 4.9, 1.5 Hz, 1H), 1.95 (d, J=12.7 Hz, 1H), 1.81 (d, J=12.7 Hz, 1H), 1.48 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; | A mixture of give (5-(3,5-difluorophenyl)-4,5-dihydro-1H-pyrazol-1-yl)-trans-(3- methylpiperidin-4-yl)methanone (1.4 g, 4.6 mmol), <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (1.0 g, 7.3 mmol) and K2CO3 (1.3 g, 9.1 mmol) in DMF (20 mL) was stirred at room temperature overnight. The reaction mixture was concentrated and the residue was diluted with DCM (150 mL) and filtered. The filtrate was concentrated and the resulting residue was purified by silica gel column chromatography (2.5-10% MeOH in DCM) to give the 6-(trans-4-(5-(3,5- difluorophenyl)-4,5-dihydro-1H-pyrazole-1-carbonyl)-3-methylpiperidin-1-yl)pyrimidine-4- carbonitrile (1.34 g, 72% yield) as a yellow gel. MS (m/z) 411 (M+H)+. The racemate was separated via chiral HPLC separation using IC-H Column to provide 6- ((3R,4S)-4-((R)-5-(3,5-difluorophenyl)-4,5-dihydro-1H-pyrazole-1-carbonyl)-3- methylpiperidin-1-yl)pyrimidine-4-carbonitril and 6-((3R,4S)-4-((S)-5-(3,5-difluorophenyl)- 4,5-dihydro-1H-pyrazole-1-carbonyl)-3-methylpiperidin-1-yl)pyrimidine-4-carbonitrile and 6-((3S,4R)-4-((R)-5-(3,5-difluorophenyl)-4,5-dihydro-1H-pyrazole-1-carbonyl)-3- methylpiperidin-1-yl)pyrimidine-4-carbonitrile and 6-((3S,4R)-4-((S)-5-(3,5-difluorophenyl)- 4,5-dihydro-1H-pyrazole-1-carbonyl)-3-methylpiperidin-1-yl)pyrimidine-4-carbonitrile. The first isomer was afforded as a solid (270 mg, 20% yield). Chiral HPLC Anal. Method 22, retention time: 9.536 min, % ee = 100%. The second isomer was afforded as a solid (240 mg, 18% yield). Chiral HPLC Anal. Method 22, retention time: 11.061 min, % ee = 99.7%. The third isomer was afforded as a solid (260 mg, 19% yield). Chiral HPLC Anal. Method 22, retention time: 14.190 min, % ee = 99.7%. The fourth isomer was afforded as a solid (230 mg, 17% yield). Chiral HPLC Anal. Method 22, retention time: 17.474 min, % ee = 98.9%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | With N-ethyl-N,N-diisopropylamine; In isopropyl alcohol; at 160℃; for 1.5h;Microwave irradiation; Sealed tube; | [0202] To a mixture of (4-(5-Ethyl-l,2,4-oxadiazol-3-yl)phenyl)methanamine (50 mg, 0.25 mmol, 1.0 equiv) and IPA (3 mL) in a microwave vial were added 6-chloropyrimidine- 4-carbonitrile (41 mg, 0.30 mmol, 1.2 equiv) and DIPEA (103 uL, 0.59 mmol, 2.4 equiv). The vial was sealed and heated at 160 C in a microwave reactor for 90 min. The mixture was concentrated and purified by RP-HPLC (Phenomenex, gemini 5u C18 150 x 21.2 mm, 10-100% ACN/water both with 0.1% formic acid gradient over 40 min) to provide 23 mg (31%) of 6-((4-(5-ethyl-l,2,4-oxadiazol-3-yl)benzyl)amino)pyrimidine-4-carbonitrile as a white solid. LRMS (ES) m/z 307.2 (M+H). 1 H-NMR (Methanol-^, 400 MHz, ppm) d 8.49 (s, 1H), 8.02 (d, J = 7.9 Hz, 2H), 7.49 (d, J = 7.8 Hz, 2H), 6.96 (s, 1H), 4.72 (s, 2H), 3.10- 2.88 (m, 2H), 1.43 (t, 7 = 7.6 Hz, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
11% | With N-ethyl-N,N-diisopropylamine; In isopropyl alcohol; at 160℃; for 0.5h;Microwave irradiation; Sealed tube; | [0206] To a mixture of (5-(5-Methyl-l,2,4-oxadiazol-3-yl)pyridin-2-yl)methanamine (50 mg, 0.26 mmol, 1.0 equiv) and IPA (3 mL) in a microwave vial were added 6-chloro-4- cyanopyrimidine (44 mg, 0.32 mmol, 1.2 equiv) and DIPEA (110 uL, 0.63 mmol, 2.4 equiv). The vial was sealed and heated at 160 C in a microwave reactor for 30 min. The mixture was concentrated and purified by reverse phase HPLC (Phenomenex, gemini 5u C18 150 x 21.2 mm, 10-100% ACN in water both with 0.1% formic acid gradient over 40 min) to provide 8.5 mg (11%) of 6-(((5-(5-methyl-l,2,4-oxadiazol-3-yl)pyridin-2- yl)methyl)amino)pyrimidine-4-carbonitrile as a white solid. LRMS (ES) m/z 294.2 (M+H). 1H-NMR (Methanol- |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1,8-diazabicyclo[5.4.0]undec-7-ene; In N,N-dimethyl-formamide; at 80 - 100℃; for 18h; | Compound 8 (800 mg, crude) was added to a DMF (8 ml) solution, then DBU (912 mg, 6 mmol) was added, and compound 9 (<strong>[939986-65-9]6-chloro-4-pyrimidinecarbonitrile</strong>) (552 mg, 4 mmol) was added. The reaction was performed at 80 C. After 6 hours, TLC showed that a large amount of the starting compound 8 remained, and then compound 9 (<strong>[939986-65-9]6-chloro-4-pyrimidinecarbonitrile</strong>) (276 mg, 2 mmol) was added. The reaction temperature was raised to 100 C for 12 hours, and the reaction solution was poured into Water was extracted with dichloromethane. The organic phases were combined, washed with water, washed with saturated sodium chloride, and dried over anhydrous sodium sulfate. The residue was spin-dried and passed through a silica gel column (mobile phase: PE: EA = 3: 1) to obtain a crude product. Further, the compound I (also referred to as "compound NHWD-1062") is prepared through a high-performance liquid phase.MS (ESI) m / z: 364.4 (M + H +). 1HNMR (400MHz, CDCl3) 8.6 (s, 1H), 7.2-7.4 (m, 5H), 6.8 (s, 1H), 5.4 (m, 1H) , 4.3 (m, 2H), 3.9 (m, 1H), 3.1-3.2 (m, 3H), 2.8 (m, 1H), 2.4 (m, 1H), 2.1 (m, 1H), 1.7-1.9 (m , 3H), 1.3 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With N-ethyl-N,N-diisopropylamine; In acetonitrile; at 80℃; for 2h;Sealed tube; | To a suspension of (S)-(5-(3, 5-difluorophenyl)-4, 5-dihydro- lH-pyrazol-l-yl)(piperidin-4- yl)methanone, lR-(-)-camphor-lO-sulphonic acid salt (300 mg, 0.57 mmol) in MeCN (30 mL) was added <strong>[939986-65-9]6-chloropyrimidine-4-carbonitrile</strong> (80 mg, 0.57 mmol) and DIPEA (0.25 mL, 1.43 mmol) The vessel was sealed and heated at 80C for 2 h. The reaction mixture was evaporated in vacuo. This residue was purified by normal phase column chromatography [CyH/(EtOAc/EtOH 3: 1) 100/0 to 70/30] A trituration into /PnO afforded, after filtration, (S)-6-(4-(5-(3,5-difluorophenyl)-4,5-dihydro-lH-pyrazole-l- carbonyl)piperidin-l-yl)pyrimidine-4-carbonitrile (130 mg, 0.33 mmol, purity: 100 %, recovery: 58 %) as a light yellow powder. LCMS (m/z) 397 (M+H)+, retention time: 2.48 min, LC/MS Method 1. 'HNMR (400 MHz, DMSO- 6) d ppm 8.54 (s, 1H), 7.57 (s, 1H), 7.26 (s, 1H), 7.12 (tt, J=9.4, 2.1 Hz, 1H), 6.84 (d, J=6.5 Hz, 2H), 5.34 (dd, J=l2.0, 4.9 Hz, 1H), 4.47 (br.s, 2H), 3.49 (ddd, J=l9.0, 12.0, 1.0 Hz, 1H), 3.43 (tt, J=l 1.4, 3.7 Hz, 1H), 3.13 (br s, 2H), 2.75 (ddd, J=l9.2, 4.9, 1.5 Hz, 1H), 1.95 (d, J=l2.7 Hz, 1H), 1.81 (d, J= 12.7 Hz, 1H), 1.48 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine In acetonitrile at 120℃; for 2.5h; Inert atmosphere; | I-39a: Tert-butyl 1-(6-cyanopyrimidin-4-yl)piperidine-4-carboxylate Tert-butyl piperidine-4-carboxylate hydrochloride (1.000 g) was dissolved in dry ACN (10 ml). At RT DIPEA (3.7 ml) and 6-chloropyrimidine-4-carbonitrile (629.4 mg) were added and the mixture was heated at 120°C for 2.5 hunder argon. After cooling the solvent was removed in vacuo. The residue thus obtained was dissolved in a mixture of water and DCM, the phases were separated and the aqueous phase was extracted with DCM (3x). The combined organic phases were dried over magnesium sulphate, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (25 g; 0 % to 80 % EA in heptane in 9 min). The compound containing fractions were combined and the solvent was removed in vacuo to yield 906 mg of the title compound. LC/MS: m/z = 289.2 [M+H]+; tR: 1.46 min (LC/MS-method D) | |
With N-ethyl-N,N-diisopropylamine In acetonitrile at 120℃; for 2.5h; Inert atmosphere; | I-39a: Tert-butyl 1-(6-cyanopyrimidin-4-yl)piperidine-4-carboxylate Tert-butyl piperidine-4-carboxylate hydrochloride (1.000 g) was dissolved in dry ACN (10 ml). At RT DIPEA (3.7 ml) and 6-chloropyrimidine-4-carbonitrile (629.4 mg) were added and the mixture was heated at 120°C for 2.5 hunder argon. After cooling the solvent was removed in vacuo. The residue thus obtained was dissolved in a mixture of water and DCM, the phases were separated and the aqueous phase was extracted with DCM (3x). The combined organic phases were dried over magnesium sulphate, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (25 g; 0 % to 80 % EA in heptane in 9 min). The compound containing fractions were combined and the solvent was removed in vacuo to yield 906 mg of the title compound. LC/MS: m/z = 289.2 [M+H]+; tR: 1.46 min (LC/MS-method D) |
Tags: 939986-65-9 synthesis path| 939986-65-9 SDS| 939986-65-9 COA| 939986-65-9 purity| 939986-65-9 application| 939986-65-9 NMR| 939986-65-9 COA| 939986-65-9 structure
[ 26293-93-6 ]
2,6-Dichloropyrimidine-4-carbonitrile
Similarity: 0.85
[ 5734-67-8 ]
4-Chloro-6-ethylpyrimidin-2-amine
Similarity: 0.75
[ 75833-38-4 ]
2-Chloropyrimidine-4-carbonitrile
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[ 1015846-32-8 ]
4-Chloro-5-isopropylpyrimidine
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[ 37131-91-2 ]
6-Chloropyrimidine-4-carboxylic acid
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[ 26293-93-6 ]
2,6-Dichloropyrimidine-4-carbonitrile
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[ 75833-38-4 ]
2-Chloropyrimidine-4-carbonitrile
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[ 64376-18-7 ]
6-Amino-2-chloropyrimidine-4-carbonitrile
Similarity: 0.64
[ 26293-93-6 ]
2,6-Dichloropyrimidine-4-carbonitrile
Similarity: 0.85
[ 5734-67-8 ]
4-Chloro-6-ethylpyrimidin-2-amine
Similarity: 0.75
[ 75833-38-4 ]
2-Chloropyrimidine-4-carbonitrile
Similarity: 0.72
[ 1015846-32-8 ]
4-Chloro-5-isopropylpyrimidine
Similarity: 0.67
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