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Chemical Structure| 95656-88-5
Chemical Structure| 95656-88-5
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Product Details of [ 95656-88-5 ]

CAS No. :95656-88-5 MDL No. :MFCD08061949
Formula : C12H15NO3 Boiling Point : -
Linear Structure Formula :- InChI Key :MBLJFGOKYTZKMH-UHFFFAOYSA-N
M.W : 221.25 Pubchem ID :560953
Synonyms :

Calculated chemistry of [ 95656-88-5 ]

Physicochemical Properties

Num. heavy atoms : 16
Num. arom. heavy atoms : 6
Fraction Csp3 : 0.42
Num. rotatable bonds : 4
Num. H-bond acceptors : 3.0
Num. H-bond donors : 1.0
Molar Refractivity : 62.98
TPSA : 49.77 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -6.85 cm/s

Lipophilicity

Log Po/w (iLOGP) : 2.33
Log Po/w (XLOGP3) : 1.13
Log Po/w (WLOGP) : 0.86
Log Po/w (MLOGP) : 1.14
Log Po/w (SILICOS-IT) : 1.13
Consensus Log Po/w : 1.32

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -1.94
Solubility : 2.56 mg/ml ; 0.0116 mol/l
Class : Very soluble
Log S (Ali) : -1.77
Solubility : 3.77 mg/ml ; 0.017 mol/l
Class : Very soluble
Log S (SILICOS-IT) : -2.14
Solubility : 1.61 mg/ml ; 0.00726 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 2.63

Safety of [ 95656-88-5 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P280-P305+P351+P338 UN#:N/A
Hazard Statements:H302-H315-H319-H332-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 95656-88-5 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 95656-88-5 ]
  • Downstream synthetic route of [ 95656-88-5 ]

[ 95656-88-5 ] Synthesis Path-Upstream   1~23

  • 1
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Reference: [1] Chemical Communications, 2017, vol. 53, # 3, p. 509 - 512
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Reference: [1] Tetrahedron Asymmetry, 2007, vol. 18, # 3, p. 435 - 442
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Reference: [1] Advanced Synthesis and Catalysis, 2011, vol. 353, # 13, p. 2321 - 2327
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Reference: [1] Chemical Communications, 2017, vol. 53, # 3, p. 509 - 512
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Reference: [1] Bulletin of the Chemical Society of Japan, 1996, vol. 69, # 1, p. 207 - 215
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Reference: [1] Advanced Synthesis and Catalysis, 2011, vol. 353, # 13, p. 2321 - 2327
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YieldReaction ConditionsOperation in experiment
96% With sulfur trioxide pyridine complex; N-ethyl-N,N-diisopropylamine In dichloromethane; dimethyl sulfoxide at 0℃; A solution of intermediate 6.iii (1.10 g) in DCM (8 mL) was cooled to 0° C. and DIPEA (2.5 mL) was added dropwise, followed by a solution of sulfur trioxide pyridine complex (1.79 g) in DMSO (6.5 mL).
The reaction mixture was stirred at 0° C. for 1 h and was quenched by the addition of water (6 mL).
The aq.
layer was extracted with Et2O/Hex (1:1, 3*5 mL) and the combined org.
layers were concentrated in vacuo.
The residue obtained after work up (Et2O/Hex 1:1) was purified by chromatography (Hex/EA 5:5) to give 1.05 g (96percent yield) of a yellowish oil.
1H NMR (DMSOd6; δ ppm): 2.48-2.61 (2H, m); 3.61-3.80 (4H, m); 5.09 (2H, s); 7.27-7.41 (5H, m).
96%
Stage #1: With pyridine-SO3 complex; N-ethyl-N,N-diisopropylamine In dichloromethane; dimethyl sulfoxide at 0℃; for 1 h;
Stage #2: With water In dichloromethane; dimethyl sulfoxide
6.iv. 3 -oxo-pyrrolidine- 1-carboxylic acid benzyl ester:A solution of intermediate .iii (1.10 g) in DCM (8 ml) was cooled to 0 0C and DIPEA (2.5 ml) was added dropwise, followed by a solution of sulfur trioxide pyridine complex (1.79 g) in DMSO (6.5 ml). The reaction mixture was stirred at 0 0C for 1 h and was quenched by the addition of water (6 ml). The aq. layer was extracted with Et2O/Hex (1 :1, 3 x 5 ml) and the combined org. layers were concentrated in vacuo. The residue obtained after work up (Et2O/Hex 1 :1) was purified by chromatography (Hex/EA 5:5) to give 1.05 g (96percent yield) of a yellowish oil. 1H NMR (DMSOd6; δ ppm): 2.48-2.61 (2H, m); 3.61-3.80 (4H, m); 5.09 (2H, s); 7.27-7.41 (5H, m).
90% With sulfur trioxide pyridine complex; dimethyl sulfoxide; N-ethyl-N,N-diisopropylamine In dichloromethane at 0℃; for 1 h; To a stirred solution of intermediate B (15.50 g, 0.07 mol) in DCM (100 mL) was added DIPEA (35.2 mL 0.21 mol) at 0°C . A solution of pyridine sulfur trioxide (25.2g, 0.16 mol) in DMSO (70 mL) was added dropwise and the resulting mixture stirred at 0°C for 1 h. The reaction was quenched by addition of H20 and the aqueous layer was extracted twice with DCM. The combined organic layers were washed with brine, dried (Na2S04), filtered and concentrated. The crude product obtained was purified by flash chromatography (EtOAc/Pet ether=1 :2) to give compound C (13.80 g, 90percent) as yellow solid. It's structure was confirmed by LC-MS spectra. TLC:Rf=0.7(silica gel,EA:PE=1 : 1 , v/v) LC-MS :[M+23]= 242.
79% With 1-hydroxy-3H-benz[d][1,2]iodoxole-1,3-dione In acetonitrile at 70℃; for 2 h; A mixture of benzyl 3-hydroxypyrrolidinyl-1-carboxylate (14 g, 63.3 mmol) and IBX (21.3 g, 76 mmol) in acetonitrile (200 mL) was stirred at 70 °C for 2 hours. The mixture was filtered and the filtrate concentrated. The remaining residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate 1:1) to give benzyl 3-oxopyrrolidinyl-1- carboxylate (11 g, 79percent) as a colorless oil.1H NMR (400 MHz, DMSO-d6) δ ppm 7.46 - 7.25 (m, 5H), 5.13 (s, 2H), 3.83 - 3.64 (m, 4H), 2.57 (s, 2H).
27% With pyridinium chlorochromate In dichloromethane at 20℃; for 72 h; Benzyl 3-hydroxypyrrolidine-1-carboxylate (0.30 g, 1.34 mmol) was dissolved in DCM (20 mL) and pyridinium chlorochromate was added (0.44 g, 2.0 mmol). The resulting slurry was stirred at room temperature for 72 h. Benzyl 3-oxopyrrolidine-1-carboxylate (0.080 g, 27percent) was isolated as a colorless oil by prep. HPLC YMC ODSA 30.x.100 mm, 20-100percent MeOH/H2O (0.1percent TFA) gradient over 10 mins at 20 mL/min flow rate at a retention time of 4.25 min. LCMS: 1.20 min [M+1] not observed (2 min gradient, MeOH/H2O 0.1percent TFA).
5.6%
Stage #1: With oxalyl dichloride; dimethyl sulfoxide In dichloromethane at -60 - -50℃; for 0.5 h;
Stage #2: at 20℃;
(ii) N-Benzyloxycarbonyl-3-pyrrolidinone: To a chilled (-60°C) solution of oxalyl chloride (23 mL, 98percent, 258.6 mmol) in dichloromethane (400 mL) was added dropwise a solution of anhydrous dimethyl sulfoxide (36.7 mL, 517.3 mmol) in dichloromethane (20 mL) at such a rate to keep the temperature below -40°C. The reaction mixture was then stirred at -60°C for 15 min. Then a solution of N-benzyloxycarbonyl-3-pyrrolidinol (58.22 g, step i, no more than 224.9 mmol) in dichloromethane (80 mL) was added dropwise, keeping the reaction mixture temperature below -50°C. The reaction mixture was then stirred at -60°C for 30 min before adding triethylamine (158.3 mL, 99percent, 1.125 mol). The resulting mixture was allowed to warm up to room temperature and then washed with water (600 mL), 1M HCl aqueous solution (580 mL) and water (400 mL). The organic layer was dried over sodium sulfate and concentrated in vacuo to leave 54.5 g of amber oil, which was further pumped under high vacuum with stirring at room temperature for 25 min. to give 52.08 g (5.6percent over theoretical yield) of the crude title compound suitable for the next step without any further purification.

Reference: [1] Patent: US2009/247578, 2009, A1, . Location in patent: Page/Page column 14
[2] Patent: WO2008/56335, 2008, A1, . Location in patent: Page/Page column 34
[3] Patent: WO2014/32, 2014, A1, . Location in patent: Page/Page column 51; 52
[4] Chemical Communications, 2007, # 21, p. 2136 - 2138
[5] Patent: WO2017/216726, 2017, A1, . Location in patent: Page/Page column 581
[6] Patent: US2007/161685, 2007, A1, . Location in patent: Page/Page column 126
[7] Journal of Medicinal Chemistry, 2007, vol. 50, # 12, p. 2818 - 2841
[8] Patent: EP1087934, 2004, B1, . Location in patent: Page 26
[9] Journal of Medicinal Chemistry, 1992, vol. 35, # 8, p. 1393 - 1398
[10] Patent: US2002/58809, 2002, A1,
[11] Patent: EP1553074, 2005, A1, . Location in patent: Page/Page column 51
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YieldReaction ConditionsOperation in experiment
86% With dimethyl sulfoxide; triethylamine In dichloromethane; water Example A
1-Benzyloxycarbonyl-3-pyrrolidone
A dichloromethane (40 ml) solution of 16.58 ml (233.6 mmol) of dimethyl sulfoxide was added dropwise to a dichloromethane (200 ml) solution of 10.19 ml (116.8 mmol) of oxalyl chloride at -78° C., and the mixture was stirred for 10 minutes at the same temperature.
To the reaction solution was added dropwise a solution of 23.50 g of literary known 1-benzyloxycarbonyl-3-hydroxypyrrolidine in 200 ml of dichloromethane at -78° C., followed by 60 minutes of stirring at the same temperature.
This solution was mixed with 74.02 ml (531.1 mmol) of triethylamine at -78° C., and stirred for 60 minutes at the same temperature and then at room temperature for 60 minutes.
After completion of the reaction, 500 ml of water was added dropwise to the reaction solution, and the organic layer was separated.
The aqueous layer was washed with dichloromethane (100 ml*2), and combined organic layer was washed with saturated brine (300 ml*1).
After drying the organic layer over sodium sulfate, the solvent was evaporated.
The resulting residue was subjected to a silica gel column chromatography to yield 20.1 g (86percent) of the title compound as an oily product from the elude of n-hexane:ethyl acetate=1:1.
1H-NMR (400 MHz, CDCl3) δ: 2.58-2.62 (2H, m), 3.82-3.87 (4H, m), 5.18 (2H, s), 7.30-7.37 (5H, m).
Reference: [1] Patent: US6469023, 2002, B1,
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Reference: [1] Patent: US6331545, 2001, B1,
  • 10
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YieldReaction ConditionsOperation in experiment
90% With potassium carbonate In tetrahydrofuran at 20℃; for 16 h; Procedure 35
Procedure 35 provides a preparation of 3-cyclopropylmethoxypyrrolidine from hydroxypyrrolidine.
A solution of 3-hydroxy-pyrrolidine-hydrochloride (162 mmol) in tetrahydrofuran (100 mL) was treated with potassium carbonate (210 mmol) and a solution of benzyl chloroformate (210 mmol) in tetrahydrofuran (50 mL).
The resulting solution was maintained for 16 h at rt.
The reaction mixture was concentrated and the residue was dissolved in ethyl acetate (200 mL).
The solution was washed with brine (3*100 mL), dried (magnesium sulfate), and concentrated to provide the protected amine in 90percent yield as a yellow liquid.
87% With sodium carbonate In tetrahydrofuran; water at 20℃; for 1 h; To a stirred solution of intermediate A (10.00 g, 81 mmol) in H2O/THF=1/1(200 mL) was added Na2C03 (24.30 g 0.23 mol) and Cbz-CI (23.50 g, 0.14 mol). The resulting mixture was stirred at r.t for 1h. The reaction was quenched by addition of 1M HCI and the aqueous layer extracted twice with DCM. The combined organic layers were then washed with brine, dried (Na2S04) filtered and concentrated. The crude product was purified by flash chromatography (EtOAc/Pet ether=1:4) to give B (15.50 g 87percent) as white solid. The structure was confirmed by LC-MS spectra. TLC:Rf=0.3(silica gel,EA:PE=1 :2, v/v) LC-MS : [M+H]+= 222 ; [M+23]= 244.
Reference: [1] Patent: US2007/78147, 2007, A1, . Location in patent: Page/Page column 77
[2] Patent: WO2014/32, 2014, A1, . Location in patent: Page/Page column 51
[3] Patent: US2008/318941, 2008, A1, . Location in patent: Page/Page column 27
[4] Patent: WO2009/23844, 2009, A2, . Location in patent: Page/Page column 100-101
[5] Patent: US2008/200471, 2008, A1, . Location in patent: Page/Page column 50
[6] Patent: US2010/16297, 2010, A1, . Location in patent: Page/Page column 29
[7] Patent: WO2010/21797, 2010, A1, . Location in patent: Page/Page column 62-63
[8] Patent: US2010/29629, 2010, A1, . Location in patent: Page/Page column 49-50
[9] Patent: WO2010/24980, 2010, A1, . Location in patent: Page/Page column 82
[10] Patent: US2010/22581, 2010, A1, . Location in patent: Page/Page column 39
[11] Patent: WO2007/98418, 2007, A1, . Location in patent: Page/Page column 136-137
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YieldReaction ConditionsOperation in experiment
57% With triethylamine In dichloromethane at 20℃; for 12 h; To a solution of pyrrolidin-3-ol (10.45 g, 120.1 mmol) in dichloromethane (300 mL) was added benzyl chloroformate (24.6 g, 144 mmol) and triethylamine (24.3 g, 240.2 mmol). The resulting solution was stirred at room temperature for 12 hours. After concentrating the reaction, the remaining material was partitioned between ethyl acetate (100 mL) and water (60 mL). The layers were separated. The organic layer was washed with water (60 mL), aqueous saturated sodium chloride solution (60 mL), dried and concentrated. The residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate 2:1) to give benzyl 3-hydroxypyrrolidinyl-1-carboxylate (15.2 g, 57percent) as a colorless gum. LCMS m/z = 222.1 [M+H]+.
49% for 20 h; Prβparatlon 16; S-Hydroxy-pyrrolldlne-i-carboxyllc acid benzyl ester; 3-Pyrrolidiπol (6.99g, 68.9 mmol), benzyl chloroformata (10.66 mL, 75.8 mmol) and CH2CI2 (200 mL) were stirred for 2Oh then washed with water and brine, dried (MgSO4) and concentrated to give a thick yellow oil. Chromatography, flushing first with 20percent EtOAc/ hexaπes then eluting with 30percent MeOH/EtOAc, afforded 7.4Og (49percent) of the title compound: NMR (CDCI3) δ 7.35-7.26 (m, 5H), 5.11 (s, 2H), 4.46 (br s, 1H), 3.60-3.38 (m, 4H)1 2.00-2.82 (m, 2H).
Reference: [1] Chemical Communications, 2007, # 21, p. 2136 - 2138
[2] Patent: WO2017/216726, 2017, A1, . Location in patent: Page/Page column 581
[3] Patent: WO2007/60526, 2007, A1, . Location in patent: Page/Page column 44; 71
[4] Journal of Medicinal Chemistry, 2007, vol. 50, # 12, p. 2818 - 2841
[5] Bulletin of the Chemical Society of Japan, 1996, vol. 69, # 1, p. 207 - 215
[6] Journal of Medicinal Chemistry, 1998, vol. 41, # 21, p. 4080 - 4100
[7] Journal of Labelled Compounds and Radiopharmaceuticals, 1999, vol. 42, # SUPPL. 1, p. S207-S209
[8] Patent: US5786358, 1998, A,
[9] Patent: EP761668, 1997, A2,
[10] Advanced Synthesis and Catalysis, 2007, vol. 349, # 8-9, p. 1475 - 1480
[11] Synthesis, 2011, # 22, p. 3669 - 3674
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YieldReaction ConditionsOperation in experiment
51%
Stage #1: With borane In tetrahydrofuran at 0 - 20℃; Inert atmosphere
Stage #2: With water; dihydrogen peroxide; sodium hydroxide In tetrahydrofuran at 0 - 20℃; Inert atmosphere
A 1M solution of borane in THF (9 mL) was added to a solution of intermediate 6.ii (1.81 g) in THF (25 mL) at 0° C. under nitrogen.
The reaction mixture was stirred at rt for 16 k and was cooled to 0° C. 20percent NaOH (1.8 mL) was carefully added dropwise followed by 35percent aq. hydrogen peroxide (1.2 mL).
The mixture was stirred at 0° C. for 30 min and at rt for 2 h. Et2O and an aq.
40percent sodium bisulfite solution were added and the reaction mixture stirred vigorously for 15 min.
The residue obtained after work up (Et2O) was purified by chromatography (Hex/EA 5:5 to 3:7) to give 1.01 g (51percent yield) of a colorless oil.
1H NMR (DMSOd6; δ ppm): 1.67-1.82 (1H, m); 1.82-1.96 (1H, m); 3.16-3.25 (1H, m); 3.28-3.44 (3H, m); 4.20-4.29 (1H, broad); 4.92 (1H, d, J=3); 5.06 (2H, s); 7.27-7.41 (5H, m).
51%
Stage #1: With borane In tetrahydrofuran at 0 - 20℃; for 16 h;
Stage #2: With sodium hydroxide; water; dihydrogen peroxide In tetrahydrofuran at 0 - 20℃; for 2.5 h;
Stage #3: With water; sodium hydrogensulfite In tetrahydrofuran for 0.25 h;
6. Ui. (RS) -3 -hydroxy-pyrrolidine- 1-carboxylic acid benzyl ester:A \\M solution of borane in THF (9 ml) was added to a solution of intermediate 6.ii (1.81 g) in THF (25 ml) at 0 0C under nitrogen. The reaction mixture was stirred at rt for 16 h and was cooled to 0 0C. 20percent NaOH (1.8 ml) was carefully added dropwise followed by 35percent aq. hydrogen peroxide (1.2 ml). The mixture was stirred at 0 0C for 30 min and at rt for 2 h. Et2O and an aq. 40percent sodium bisulfite solution were added and the reaction mixture stirred vigorously for 15 min. The residue obtained after work up (Et2O) was purified by chromatography (Hex/EA 5:5 to 3:7) to give 1.01 g (51percent yield) of a colourless oil. 1H NMR (DMSOd6; δ ppm): 1.67-1.82 (IH, m); 1.82-1.96 (IH, m); 3.16-3.25 (IH, m); 3.28-3.44 (3H, m); 4.20-4.29 (IH, broad); 4.92 (IH, d, J = 3); 5.06 (2H, s); 7.27-7.41 (5H, m).
Reference: [1] Patent: US2009/247578, 2009, A1, . Location in patent: Page/Page column 14
[2] Patent: WO2008/56335, 2008, A1, . Location in patent: Page/Page column 34
[3] Journal of Organic Chemistry, 1985, vol. 50, # 10, p. 1582 - 1589
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YieldReaction ConditionsOperation in experiment
47% With sodium hydroxide In tetrahydrofuran; water at 20℃; for 3 h; To the solution of pyrrolidin-3-ol (1.0 g, 11 mmol) in THF (5 mL) and 1M NaOH (5 mL) was added dibenzyldicarbonate (3.3, 11 mmol) at room temperature. The reaction mixture was stirred for 3 h then the THF removed under reduced pressure. The residue was dissolved in DCM (50 mL) and washed successively with saturated NaHCO3 (2.x.20mL) and saturated NaCl (2.x.20 mL). The solution was dried over Na2SO4, decanted and concentrated. Benzyl 3-hydroxypyrrolidine-1-carboxylate (1.1 g, 47percent) was isolated by prep. HPLC YMC ODSA 30.x.100 mm, 20-100percent MeOH/H2O (0. 1percent TFA) gradient over 10 mins at 20 mL/min flow rate at a retention time of 4.93 min. LCMS: 1.21 min [M+1] 222.06 (2 min gradient, MeOH/H2O 0.1percent TFA).
Reference: [1] Patent: US2007/161685, 2007, A1, . Location in patent: Page/Page column 126
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Reference: [1] Patent: US4916141, 1990, A,
[2] Patent: US4851418, 1989, A,
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Reference: [1] Journal of Medicinal Chemistry, 1992, vol. 35, # 8, p. 1393 - 1398
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Reference: [1] Patent: US2002/58809, 2002, A1,
  • 17
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Reference: [1] Patent: US4937235, 1990, A,
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Reference: [1] Patent: EP1087934, 2004, B1, . Location in patent: Page 25-26
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Reference: [1] Patent: WO2008/56335, 2008, A1,
  • 20
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Reference: [1] Journal of Labelled Compounds and Radiopharmaceuticals, 1999, vol. 42, # SUPPL. 1, p. S207-S209
  • 21
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Reference: [1] Process Biochemistry, 2017, vol. 56, p. 90 - 97
  • 22
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Reference: [1] Tetrahedron Asymmetry, 2005, vol. 16, # 15, p. 2521 - 2524
  • 23
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Reference: [1] Journal of the Chemical Society, Chemical Communications, 1984, # 19, p. 1298 - 1299
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