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[ CAS No. 98600-34-1 ] {[proInfo.proName]}

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Chemical Structure| 98600-34-1
Chemical Structure| 98600-34-1
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Product Details of [ 98600-34-1 ]

CAS No. :98600-34-1 MDL No. :MFCD05864695
Formula : C9H6BrNO Boiling Point : -
Linear Structure Formula :- InChI Key :IPAFHZDRYAWZOB-UHFFFAOYSA-N
M.W : 224.05 Pubchem ID :2763178
Synonyms :

Calculated chemistry of [ 98600-34-1 ]

Physicochemical Properties

Num. heavy atoms : 12
Num. arom. heavy atoms : 9
Fraction Csp3 : 0.0
Num. rotatable bonds : 1
Num. H-bond acceptors : 1.0
Num. H-bond donors : 1.0
Molar Refractivity : 51.39
TPSA : 32.86 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -6.1 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.52
Log Po/w (XLOGP3) : 2.2
Log Po/w (WLOGP) : 2.74
Log Po/w (MLOGP) : 1.6
Log Po/w (SILICOS-IT) : 3.33
Consensus Log Po/w : 2.28

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -3.1
Solubility : 0.176 mg/ml ; 0.000787 mol/l
Class : Soluble
Log S (Ali) : -2.52
Solubility : 0.67 mg/ml ; 0.00299 mol/l
Class : Soluble
Log S (SILICOS-IT) : -4.09
Solubility : 0.0182 mg/ml ; 0.0000811 mol/l
Class : Moderately soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.44

Safety of [ 98600-34-1 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P305+P351+P338 UN#:N/A
Hazard Statements:H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 98600-34-1 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 98600-34-1 ]
  • Downstream synthetic route of [ 98600-34-1 ]

[ 98600-34-1 ] Synthesis Path-Upstream   1~15

  • 1
  • [ 98600-34-1 ]
  • [ 77603-45-3 ]
Reference: [1] Organic and Biomolecular Chemistry, 2013, vol. 11, # 43, p. 7455 - 7457
  • 2
  • [ 98600-34-1 ]
  • [ 89245-35-2 ]
YieldReaction ConditionsOperation in experiment
49%
Stage #1: With sodium tetrahydroborate In methanol; formamide at 20℃; for 0.25 h;
Stage #2: at 55℃; for 16 h;
General procedure: To a flask containing a 3-formyl-indole derivative (1.0 equiv) and sodium borohydride (3.0 equiv), methanol (9mL for 1.0mmol of starting material) and formamide (9mL for 1.0mmol of starting material) were added and stirred at room temperature for 15min. The mixture was added to potassium cyanide (10.0 equiv) prepared in a separate flask and stirred at 55°C for 16h. The reaction was quenched by adding brine and a few drops of 5N NaOH, followed by extraction with dichloromethane thrice. The combined organic layer was washed with brine, dried over anhydrous sodium sulphate and concentrated in vacuo. Purification by flash silica gel column chromatography afforded the indole-3-acetonitrile derivative product.
Reference: [1] European Journal of Medicinal Chemistry, 2018, vol. 156, p. 344 - 367
  • 3
  • [ 52488-36-5 ]
  • [ 68-12-2 ]
  • [ 98600-34-1 ]
YieldReaction ConditionsOperation in experiment
95%
Stage #1: at 0℃; for 0.0833333 h;
Stage #2: at 65 - 75℃; for 7 h;
In a 500-mL three-neck round-bottom flask, 120 mL of dry N,N-dimethylformamide was added and the temperature was lowered to 0°C. Under vigorous stirring, 11 mL (0.12 mol) of phosphorus oxychloride was slowly added dropwise. Stirring was continued for 5 minutes, and 10 g (0.048πο1) dissolved in 20 g of dry N,N-dimethylformamide was slowly added dropwise. 4-Bromoindole (purity 95percent), After the addition, the cold bath was removed and the reaction continued for 1 h. At this point, the reaction solution became a viscous suspension. 4.7M potassium hydroxide solution was slowly added dropwise to the reaction suspension (incremental speed to maintain the reaction solution at 65-75°C, If the temperature is too high, the bath can be cooled, and the reaction is continued for 6 hours after the addition. Slowly add 20 mL of saturated sodium bicarbonate solution, continue stirring for 5 min, dilute with ethyl acetate and dry. Concentration under reduced pressure to obtain the crude 4-bromoindole-3-carboxaldehyde 12g; Immediately afterwards, acetone (2.5mL/g crude product) was heated and refluxed and dissolved. After the dissolution, petroleum ether (11mL/g crude product) was added. The boiling range of petroleum ether is 60oC-90oC, and immediately white fine needle crystals are precipitated) and frozen at low temperature for 10 min. The temperature of freezing is -5 DEG C. After freezing, it is filtered through a sand funnel and washed with petroleum ether twice. In the absence of crystals, the filtered filtrate was again evaporated by evaporation to dry the solvent and the above crystallization was repeated. After a total of four crystallizations, the white crystals of 4-bromoindole-3-carbaldehyde were combined and allowed to air dry. (10.3 g, yield 95percent);
49%
Stage #1: for 0.333333 h; Cooling with ice
Stage #2: at 20℃; for 1.5 h;
General procedure: To a dried two-neck round-bottom flask containing DMF (0.7mL for 1.10mmol of starting material) chilled in an ice bath, POCl3 (1.95 equiv) was added slowly. After stirring for 20min, a solution of an indole derivative (1.0 equiv) in DMF (3mL for 1.10mmol of starting material) was added dropwise. The reaction was allowed to warm to room temperature and allowed to stir for 1.5h. The reaction was quenched by adding ice followed by 1N NaOH (40mL) dropwise in an ice bath. The crude mixture was allowed to stand at room temperature and the precipitate formed was filtered to afford the 3-formyl-indole derivative product.
Reference: [1] Organic Letters, 2006, vol. 8, # 23, p. 5287 - 5289
[2] Journal of the American Chemical Society, 2009, vol. 131, # 31, p. 10796 - 10797
[3] Organic Letters, 2013, vol. 15, # 21, p. 5448 - 5451
[4] Patent: CN107935905, 2018, A, . Location in patent: Paragraph 0029-0031; 0034; 0038
[5] Journal of Organic Chemistry, 2016, vol. 81, # 4, p. 1723 - 1730
[6] Organic and Biomolecular Chemistry, 2010, vol. 8, # 2, p. 442 - 450
[7] Tetrahedron Letters, 2000, vol. 41, # 35, p. 6901 - 6904
[8] Organic Letters, 2003, vol. 5, # 19, p. 3519 - 3521
[9] Heterocycles, 1996, vol. 43, # 7, p. 1497 - 1512
[10] Angewandte Chemie - International Edition, 2014, vol. 53, # 22, p. 5600 - 5603[11] Angew. Chem., 2014, vol. 126, # 22, p. 5706 - 5709,4
[12] European Journal of Medicinal Chemistry, 2018, vol. 156, p. 344 - 367
[13] Bioorganic and Medicinal Chemistry Letters, 2007, vol. 17, # 6, p. 1793 - 1798
[14] Patent: WO2009/23623, 2009, A1, . Location in patent: Page/Page column 62
[15] Organic Letters, 2008, vol. 10, # 22, p. 5239 - 5242
[16] Journal of Organic Chemistry, 2011, vol. 76, # 13, p. 5506 - 5512
[17] Tetrahedron, 2011, vol. 67, # 44, p. 8515 - 8528
[18] Chemistry - A European Journal, 2015, vol. 21, # 43, p. 15104 - 15107
[19] Tetrahedron, 2016, vol. 72, # 49, p. 8042 - 8049
[20] Chemistry - A European Journal, 2017, vol. 23, # 47, p. 11234 - 11238
[21] Patent: WO2009/108551, 2009, A2, . Location in patent: Page/Page column 53
[22] Patent: CN108623585, 2018, A, . Location in patent: Paragraph 0078; 0079; 0080; 0081; 0083; 0084; 0085
  • 4
  • [ 64258-88-4 ]
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YieldReaction ConditionsOperation in experiment
80% With pyridinium chlorochromate In N,N-dimethyl-formamide at 100℃; for 0.5 h; General procedure: PCC (1.1 mmol) was added to a stirred solution of 4 (1mmol) in DMF (5 mL) at 100 °C (pre-heated oil bath) and the mixture was stirred at 100 °C for 0.5 h.After cooling, the resulting mixture was added to 10percent aqueous HCl solution, extracted with AcOEt (100mL), washed with brine, and dried over MgSO4. The solvent was removed, and the residue was purifiedby silica gel column chromatography with CH2Cl2 to give 2.
Reference: [1] Heterocycles, 2015, vol. 91, # 7, p. 1423 - 1428
  • 5
  • [ 52488-36-5 ]
  • [ 50-00-0 ]
  • [ 98600-34-1 ]
YieldReaction ConditionsOperation in experiment
80% With iron(III) chloride; ammonia In water; N,N-dimethyl-formamide at 130℃; for 4.5 h; General procedure: A 50 mL round-bottomed flask equipped with a magnetic stirringbar was charged with the appropriate indole 1 (0.5 mmol,1.0 equiv), 37percent aq HCHO (0.5 mmol, 0.0406 g, 1.0 equiv), 25percent aqNH3 (1.0 mmol, 0.0681 g, 2.0 equiv), FeCl3 (0.01 mmol, 0.0016 g,2 molpercent), and DMF (2 mL). The flask was fitted with a reflux condenser,and the mixture was stirred at 130 °C under open air.When the reaction was complete (TLC), the mixture was cooledto r.t., diluted with sat. aq NaCl (10 mL) and 0.5 M aq HCl (2 mL),and extracted with EtOAc (3 x 7 mL). The organic layers werecombined, washed with sat. aq NaHCO3 (10 mL) and sat. aq NaCl(10 mL), dried (Na2SO4), and concentrated under reduced pressure.The residue was purified by flash column chromatography(silica gel, hexane–EtOAc).
Reference: [1] Synlett, 2017, vol. 28, # 19, p. 2670 - 2674
  • 6
  • [ 52488-36-5 ]
  • [ 100-97-0 ]
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YieldReaction ConditionsOperation in experiment
81% With aluminum (III) chloride In N,N-dimethyl-formamide at 120℃; for 5 h; General procedure: A method for synthesizing compound III-1 wherein R1, R2 and R3 are simultaneously hydrogen in the formula III, the method comprising the steps of:(1) Add to a 50 mL round bottom flask1.0mmol indole(In the formula I, R1, R2, and R3 are both hydrogen) and1.0 mmol (0.140 g) of hexamethylenetetramine, then 2 mL of N,N-dimethylformamide (DMF), stirred in a magnetic stirrer to dissolve the solid, followed by the addition of 0.05 mmol (0.012 g) of crystalline trichloride Aluminum, connected to a reflux condenser, heated at 120 ° C, the reaction progress was monitored by TLC, and the reaction was cooled to room temperature after 1 h to prepare a suspension;(2) The suspension prepared in the step (1) is suction filtered with a funnel padded with diatomaceous earth.The filter cake was washed well with ethyl acetate, suction filtered, and the above operation was repeated until the filtrate had no product, and all the filtrates were combined.Dilute with 15 mL of saturated saline solution, disperse and separate the layers, and the aqueous layer was further extracted with ethyl acetate three times.Each time 10 mL, the ethyl acetate layer was combined and washed with 10 mL of 2 mol/L diluted hydrochloric acid.Wash with 10 mL of saturated sodium bicarbonate solution, and finally wash with 10 mL of saturated brine.The washed ethyl acetate layer was dried over anhydrous sodium sulfate, and after drying, the desiccant was filtered off.Then use a rotary evaporator to recover the solvent to concentrate the product, and finally,The residue is subjected to silica gel column chromatography using a mixture of n-hexane-ethyl acetate (V/V = 2:1) as an eluent to obtain a purified product.The mass of the compound III-indole-3-carbaldehyde is 0.137g,The product yield was 94percent.
Reference: [1] Patent: CN108329249, 2018, A, . Location in patent: Paragraph 0041-0044; 0106-0109
  • 7
  • [ 52488-36-5 ]
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YieldReaction ConditionsOperation in experiment
65%
Stage #1: at 0℃; for 0.25 h;
Stage #2: at 35℃; for 1.2 h;
Intermediate 27; 4-Bromo-lH-indole-3-carbaldehyde; POCl3 (1.02 g, 6.63 mmol) was added dropwise to ice cold DMF (3 mL) and stirred for 15 min. 4-Bromo indole (1.00 g, 5.10 mmol) in DMF (1 mL) was added slowly. The mixture was heated to 35 °C with continous stirring for 1.2Oh (yellow precipitation was formed). The reaction mixture was cold on ice and treated with ice and 20percent W/w aq. NaOH to pH 14 (pink color). Heating at reflux for 15 min. afforded a yellow clear solution, which formed a white precipitation when allowed to attain rt. The precipitation was filtered off, rinsed with ice cold water and dried under reduced pressure over weekend to give the title compound (1.14 g, 65percent) as an off white solid. MS (ESI+) for C9H6BrNO m/z 224 (M+H)+.
Reference: [1] Chemical and Pharmaceutical Bulletin, 1985, vol. 33, # 9, p. 3696 - 3708
[2] Patent: WO2008/3703, 2008, A1, . Location in patent: Page/Page column 85
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  • [ 942-24-5 ]
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Reference: [1] Chemical and Pharmaceutical Bulletin, 1985, vol. 33, # 9, p. 3696 - 3708
  • 9
  • [ 101909-45-9 ]
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Reference: [1] Chemical and Pharmaceutical Bulletin, 1985, vol. 33, # 9, p. 3696 - 3708
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  • [ 101909-43-7 ]
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Reference: [1] Chemical and Pharmaceutical Bulletin, 1985, vol. 33, # 9, p. 3696 - 3708
  • 11
  • [ 1280538-41-1 ]
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Reference: [1] Tetrahedron, 2011, vol. 67, # 44, p. 8515 - 8528
  • 12
  • [ 55289-35-5 ]
  • [ 98600-34-1 ]
Reference: [1] Tetrahedron, 2011, vol. 67, # 44, p. 8515 - 8528
  • 13
  • [ 487-89-8 ]
  • [ 98600-34-1 ]
Reference: [1] Chemical and Pharmaceutical Bulletin, 1985, vol. 33, # 9, p. 3696 - 3708
  • 14
  • [ 24424-99-5 ]
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  • [ 303041-88-5 ]
Reference: [1] Journal of Organic Chemistry, 2016, vol. 81, # 4, p. 1723 - 1730
[2] Journal of Organic Chemistry, 2005, vol. 70, # 18, p. 7305 - 7316
[3] Organic Letters, 2013, vol. 15, # 21, p. 5448 - 5451
[4] Chemistry - A European Journal, 2017, vol. 23, # 47, p. 11234 - 11238
  • 15
  • [ 98600-34-1 ]
  • [ 475039-81-7 ]
YieldReaction ConditionsOperation in experiment
80%
Stage #1: With lithium aluminium tetrahydride In tetrahydrofuran for 1 h; Heating / reflux
Stage #2: With water In tetrahydrofuran at 20℃;
Intermediate 28; 4-Bromo-3-methyl-lH-indole; LAH (1.0M in THF, 5.75 mL, 5.75 mmol) was added dropwise to refluxing 4-bromo-lH- indole-3-carbaldehyde (644 mg, 2.87 mmol; Intermediate 27) in dry THF (20 mL). The mixture was refluxed Ih, allowed to attain rt. and quenched with water (220 μL), W/w <n="87"/>15percent aq. NaOH (220 μL) and water (650 μL). The resulting precipitation was filtered off, the filtrate concentrated and the residue was extracted with aq. NaOH (10 mL) and DCM (2x10 mL). The organic layers were combined with combined with an earlier batch of this intermediate (followed this experimental and starting from 4-bromo-lH-indole-3- carbaldehyde, 100 mg, 0.45 mmol; Intermediate 27), dried and concentrated to give the title compound (556 mg, 80percent) as a light brown oil. MS (ESI+) for C9H8BrN m/z 210 (M+H)+.
75% With lithium aluminium tetrahydride In tetrahydrofuran for 1 h; Reflux Example 43 N4-(5-Cyclopropyl- 1 H-pyrazol-3 -yl)-N2-((3 -methyl- 1 H-indol-4-yl)methyl)pyrimidine-2,4-diamine (1-92) step 1 : To a refluxing solution of 4-bromo-lH-indole-3-carbaldehyde (644 mg, 2.87 mmol) in dry THF (20 mL) was added LiAlH4 (218 mg, 5.75 mmol) in several small portions. Heating at reflux was continued for 1 h, the reaction cooled to RT and quenched with water (220 μΐ^), 15 percent aq. NaOH (w/w, 220 μΐ ), and water (650 μΐ^). The resulting precipitate was filtered and the filtrate was concentrated under reduced pressure to dryness. To the residue was added aq. NaOH (10 mL) and the solution twice extracted with DCM (2 x 10 mL). The combined extracts were dried (MgSO i), filtered and concentrated in vacuo to afford 454 mg (75percent) of 4-bromo-3 -methyl- lH-indole (230) as light brown oil: MS (ESI) m/z = 210.1 [M+l] +
730 mg With lithium aluminium tetrahydride In tetrahydrofuran at 65℃; for 1.16667 h; Cooling with ice; Inert atmosphere To a solution of 4-bromo-lH-indole-3-carbaldehyde (896 mg, 3.999 mmol) in THF (15 mL) in an ice-water bath was added a 2M solution of lithium aluminum hydride in THF (4 mL, 7.998 mmol) slowly under nitrogen. After 10 min, the reaction was heated at 65 °C for 1 h. The mixture was cooled down in an ice-water bath, and carefully added H20 (303 μL), 15percent aqueous NaOH solution (303 μL), then H20 (910 μL) and anhydrous Na2S04. After 15 min stirring, the mixture was filtered through Celite and washed with ethyl acetate. The filtrate was concentrated. The residue was purified by silica gel column chromatography to give the title compound (730 mg) as a colorless oil. LCMS m/z = 210.0 [M+H]+; NMR (400 MHz, CDC13) δ ppm 2.56 (t, J = 1.1 Hz, 3H), 6.95-7.00 (m, 2H), 7.23-7.28 (m, 2H), 7.95 (bs, 1H).
Reference: [1] Patent: WO2008/3703, 2008, A1, . Location in patent: Page/Page column 85-86
[2] Patent: WO2013/26914, 2013, A1, . Location in patent: Page/Page column 160
[3] Patent: WO2013/16197, 2013, A1, . Location in patent: Page/Page column 80-81
[4] Patent: WO2015/66344, 2015, A1, . Location in patent: Page/Page column 223
[5] Chemistry - A European Journal, 2015, vol. 21, # 43, p. 15104 - 15107
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