Structure of 107867-51-6
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CAS No. : | 107867-51-6 |
Formula : | C6H6F3N3 |
M.W : | 177.13 |
SMILES Code : | NC1=CC(=CN=C1N)C(F)(F)F |
MDL No. : | MFCD10696252 |
InChI Key : | RNSZENVDZWTPPG-UHFFFAOYSA-N |
Pubchem ID : | 10214425 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 38.05 |
TPSA ? Topological Polar Surface Area: Calculated from |
64.93 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.79 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.71 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.43 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.72 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.97 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.12 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.69 |
Solubility | 3.62 mg/ml ; 0.0204 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.65 |
Solubility | 3.95 mg/ml ; 0.0223 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.19 |
Solubility | 1.14 mg/ml ; 0.00644 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.88 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.89 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
635 mg | for 4h;Reflux; | General procedure: A mixture of 2,3-diaminopyridine in diethyl oxalate (10 mL/1 mmol phenyldiamine) was heated to reflux for 4 h before cooled to room temperature. The resulted solid was filtered,washed with ethyl acetate and 95percent ethanol, decolorized with activated charcoal and recrystallized in water and DMF or DMSO to give 5-azaquinoxalinediones as white solid. 5.2.2.6 7-Trifluoromethyl-1,4-dihydropyrido[2,3-b]pyrazine-2,3-dione (6) The title compound was prepared from 2-amino-5-trifluoromethylpyridine according to the general procedure as white solid (635 mg, 27.5percent). IR (KBr) nu 3055, 1717, 1698, 1627, 1342, 1165, 1094 cm-1; 1H NMR (400 MHz, DMSO-d6) delta 7.63 (1H, d, J = 2.0 Hz, H-8), 8.44 (1H, s, H-6), 12.13 (1H, s, NH-1), 12.71 (1H, s, NH-4); 13C NMR (100 MHz, DMSO-d6) delta 118.74 (t), 120.04 (d), 122.52, 124.18 (d), 138.99 (t), 142.95, 154.95, 156.39; HRMS-EI C8H4F3N3O2 calcd [M+Na]+ 254.0153, found 254.0150. |
997 mg (94%) | 8-Aza-6-trifluoromethyl-1,4-dihydroquinoxaline-2,3-dione (52) A mixture of 51 (800 mg, 4.52 mmol) and diethyl oxalate (7.0 g, 47.9 mmol) was heated at 160° C. with stirring for 2 h (the mixture turned into a solution, then more and more precipitate was formed) and cooled to room temperature. The mixture was diluted with hexane (20 mL), filtered, washed with hexane (3*5 mL), and dried to give 997 mg (94percent) of 52 as a yellow powder, mp >360° C. 1 H NMR (DMSO-d6), 7.625 (s, 1H), 8.441 (s, 1H), 12.120 (s, 1H), 12.703 (s, 1H). 19 F NMR (DMSO-d6), -131.225 ppm (The internal standard C6 F6: -162.9 ppm). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tin(ll) chloride; In DMF (N,N-dimethyl-formamide); at 60℃; for 4h; | (b) 5-Trifluoromethyl-pyridine-2,3-diamine. A mixture of 3-nitro-5-trifluoromethyl-pyridin-2-ylamine from step (a) above (1.2 g, 5.59 mmol), tin (II) chloride [DIHYDRATE] (3.9 g, 17.3 mmol, Aldrich), and DMF (19 mL) was heated to [60 °C] for 4 h. The reaction mixture was cooled to room temperature and [NAHC03] (150 mL) was added. The mixture was stirred for 0.5 h, diluted with EtOAc (300 mL), stirred for 0.5 h and filtered. The organic layer was separated and the aqueous layer was extracted with EtOAc (2 x 300 mL). The combined organic extracts were dried over [MGS04] and filtered. The solvent was removed in vacuo to give the title compound, which was used in the next step without additional purification. MS (ESI, positive ion) m/z : 178 [(M+1).] | |
With tin(II) chloride dihdyrate; In N,N-dimethyl-formamide; at 60℃; for 12h; | 3-Nitro-5-(trifluoromethyl)pyridin-2-amine (538.0 mg, 2.60 mmol) and SnCl22H2O (2340.0 mg, 10.39 mmol) were added to DMF (5.0 mL), and it was stirred at 60° C. for 12 hours. The reaction mixture was poured into saturated NaHCO3 aqueous solution and neutralized (pH=7), and it was then extracted with EtOAc (200.0 mL). The organic layer was washed with brine, dried over anhydrous Na2SO4, filtered and then evaporated under reduced pressure to obtain brown solid compound of 5-(trifluoromethyl)pyridin-2,3-diamine. [0780] LCMS ESI (+): 178 (M+1) | |
In methanol; | 2,3-Diamino-5-trifluoromethylpyridine (51) A mixture of 50 (950 mg, 4.59 mmol), methanol (15 mL) and Raney Ni (about 200 mg) was shaken under H2 (30-40 psi) for 2 h, then filtered. The filtrate was evaporated to dryness, giving 810 mg (100percent) of the diamine 51 as a deep yellow powder, mp 97°-99° C. 1 H NMR (CDCl3), 3.389 (bs, 2H), 4.556 (bs, 2H), 7.049 (s, 1H), 7.932 (s, 1H). |
With hydrogen;nickel; In methanol; at 20℃; under 2585.81 Torr; for 1h; | Step B: 5-(trifluorornethyl)pyridine-2,3-diamine To a methanol 5mL solution of 3-nitro-5-(trifluoromethyl)pyridin~2~amine(680mg, 3,28mmol) was added Raney nickel (240 mg charged as a wet slurry, washed 3x with 10 mL OfH2O). The mixture was hydrogenated in a Parr shaker at 50psi at room temperature for lhr, purged with N2 and filtered through a pad of celite. The celite pad was washed with methanol (5mLx3). The filtrate was concentrated under reduced pressure to give the title compound (454 mg). LC/MS: m/z 178(M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; | B. 6-Trifluoromethyl-1,3-dihydro-imidazo[4,5-b]pyridin-2-one Add 1,1'-carbonyldiimidazole (1.0 g, 6.17 mmol)to a solution of <strong>[107867-51-6]5-trifluoromethyl-pyridine-2,3 diamine</strong> (0.90 g, 5.08 mmol) in CH2Cl2 (10 mL) and stir at room temperature for 18 hours. Heat the solution to reflux for 2 hours and filter the precipitate to obtain 6-trifluoromethyl-1,3-dihydro-imidazo[4,5-b]pyridin-2-one. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1,1'-carbonyldiimidazole; In tetrahydrofuran; at 20℃; for 16h; | [(C)] [6-TRIFLUOROMETHYL-1,] 3-diliydro-imidazo [4,5-b] pyridin-2-one, trifluoroacetic acid salt. A mixture of 5-trifluoromethyl-pyridine-2, 3-diamine from step (b) above and N, [N-CARBONYLDIIMIDAZOLE] (938 mg, 579 mmol, Aldrich) in THF (10 mL) was stirred at room temperature for 16 h. The reaction mixture was diluted with [HA0] (20 mL) and extracted with EtOAc (2 x 30 mL). The combined organic extracts were concentrated in vacuo and the residue was purified by preparative HPLC (gradient 0. [1 percent] trifluoroacetic acid in acetonitrile) to give the title compound. MS (ESI positive ion) m/z: 204 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 2: A mixture of compound 1.2 (0.2 mmol) and thiocarbonyldiimidazole (0.2 mmol) in dry THF (2.0 mL) was stirred at room temperature for 30 minutes under an atmosphere of N2. 5-Trifluoromethyl-pyridine-2,3-diamine (0.2 mmol) was added and the reaction stirred at room temperature until the reaction was deemed complete. The reaction mixture was then treated with N,N'-dicyclohexylcarbodiimide (0.2 mmol) and the resulting mixture was stirred at 40-60° C. for several hours. The solvent was removed and the residue was purified by preparative HPLC to give the titled compound. 1H NMR (CD3OD, 400 MHz): delta 8.76 (s, 1H), 8.51 (s, 1H), 8.38 (s, 1H), 7.95 (s, 1H), 7.56 (d, J=7.3 Hz, 2H), 7.48 (s, 1H), 7.38 (d, J=6.4 Hz, 2H), 4.03 (s, 2H), 3.09 (s, 2H) ppm; EIMS (m/z): 456.1 (M++H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
palladium-carbon; In ethanol; | A. 5-Trifluoromethyl-pyridine-2,3 diamine Add 10percent Pd/C (0.5 g) to a solution of 3 nitro-5-(trifluoromethyl) pyridin-2-amine (1.0 g, 4.83 mmol) in ethanol (10 mL). Hydrogenate the mixture at a pressure of 50 psi for 5 hours. Filter the mixture through celite, evaporate to dryness under reduced pressure to obtain 5-trifluoromethyl-pyridine-2,3 diamine. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Representative compounds of the present invention are:...6-dimethylamino-2,3-diaminopyridine;diethyl 2-(2,3-diamino-6-pyridyl)malonate;6(4-methyl-1-pyperazinyl)-2,3-pyridinediamine;6-(methylthio)-5-(trifluoromethyl)-2,3-pyridinediamine;5-(trifluoromethyl)-2,3-pyridinediamine;6-(2,2,2-trifluorethoxy)-5-(trifluoromethyl)-2,3-pyridinediamine;6-chloro-5-(trifluoromethyl)-2,3-pyridinediamine;5-bromo-4,6-dimethyl-2,3-pyridinediamine;... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
PREPARATION 17 2-Amino-3-(2-methyl-6-methoxycarbonylaminobenzylamino)-5-trifluoromethylpyridine was obtained by reacting <strong>[107867-51-6]2,3-diamino-5-trifluoromethylpyridine</strong> with 2-methyl-6-methoxycarbonylaminobenzyl chloride according to a similar manner to that of Preparation 16. mp: 157° to 159° C. IR (Nujol): 3420, 3350, 3200, 1730, 1660, 1600, 1580, 1520 cm-1. NMR (DMSO-d6, delta): 2.33 (3H, s), 3.58 (3H, s), 4.13 (2H, d, J=5Hz), 4.93 (1H, t, J=5Hz), 6.28 (2H, broad s), 6.78 (1H, broad s), 6.92-7.42 (3H, m), 7.60 (1H, broad s), 8.80 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; at 100℃; for 0.333333h;Microwave irradiation; | Step C: 2-(chloromethyl)-6-(trifluoromethyl)-3H-imidazo[4,5-]pyridine To a DCM 2mL suspension of 5~(trifluoromethyl)rhoyridine-2,3 -diamine (454mg, 2.56mmol) was added 2~Chloro-l,l ,l-triethoxy-ethane (504mg, 2.56mmol). The mixture was heated to 1000C for 20 mill using a microwave reactor and resulting solid was suspended in 1 :1 DCM:hexanes (5mL) and gently sonicated. The precipitate was collected by suction filtration to give the title compound (324mg). LC/MS: m/z 236(M+H). 1H-NMR (500MHz, d6-DMSO): delta 4.98 (s, 2H), 8.42(d, 1H), 8.72 (d, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With Oxone; magnesium bromide ethyl etherate; In dimethyl sulfoxide; at 50℃; | Methyl 4-(5-(3-fluoro-4-formylphenyl)pyrimidin-2-yloxy)bicyclo[2.2.2]octane- 1-carboxylate (Intermediate 2, 30 mg, 0.078 mmol, 1 equiv), 5-(trifluorornethyl)pyridine- 2,3-diamine (15.2 mg, 0.086 mmol, 1.1 equiv) and magnesium(II) bromide diethyl etherate (20 mg, 0.078 mmol, 1 equiv) were weighed to a vial then suspended in DMSO (260 muL) stirred at 50 °C for 2.5 hours then Oxone (48 mg, 0.078 mmol, 1 equiv) was added and the mixture stirred at 50 °C overnight. The reaction mixture was diluted with DMSO, filtered, and purified by preparative reverse phase HPLC on a 30 x 100 mm SunFire C I 8 column with a gradient of 20percent to 70percent acetonitrile in water containing 0.05percent TFA. This gave the TFA salt of the title compound as a white solid: LCMS calc'd [MH]+ m/z 542; found m/z 542 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
143 mg | In dimethyl sulfoxide; at 70℃; for 2h; | A solution of Intermediate 18 (150 mg, 0.436 mmol) in DMSO (8.0 ml) was treated with 5-(trifluoromethyI)pyridine-2,3-diamine (85 mg, 0.479 mmol) and the mixture stirred at 70°C for 2 h. After cooling to room temperature the reaction was quenched with water to afford a precepitate. The precepitate was filtered off and washed with water. The filtered solid was dissolved in EtOAc and washed with NaHC03, brine, and dried (MgS04) and concentrated. Trituration of the solid from ether / hexane followed by filtration afforded 143 mg of Methyl 2-(Cis-3-(5-(3-fluoro-4-(6-(trifluoromethyl)-3H-imidazo[4,5-)]pyridin-2-yl)phenyl)pyrimidin-2-yloxy)cyclobutyl)acetate as a tan solid. LC-MS (M+l) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
at 120℃; for 12h; | Unpurified <strong>[107867-51-6]5-(trifluoromethyl)pyridin-2,3-diamine</strong> was added to diethyl oxalate (10.0 mL). The mixture was stirred at 120° C. for 12 hours and then cooled to room temperature. Et2O was added thereto to form a solid, and the formed solid was filtered under reduced pressure to obtain brown solid compound of 7-(trifluoromethyl)pyrido[2,3-b]pyrazin-2,3-diol. The mixture of unpurified 7-(trifluoromethyl)pyrido[2,3-b]pyrazin-2,3-diol and POCl3 (10.0 mL) was stirred at 130° C. for 12 hours and then cooled to room temperature. The reaction mixture was poured into ice water to form a solid. The formed solid was filtered and then dried under reduced pressure to obtain brown solid compound of 2,3-dichloro-7-(trifluoromethyl)pyrido[2,3-b]pyrazine (370.0 mg, 53percent in 3 steps). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
12 g | Production Example 59-4 6.1 g of sodium hydrogen sulfite was added to a mixture of 8.6 g of <strong>[107867-51-6]5-trifluoromethyl-pyridine-2,3-diamine</strong>, 11 g of 2-formyl-5-trifluoromethylphenyl ethyl sulfide, and 67 mL of DMF at room temperature. After heating and stirring the mixture for 3 hours at 100°C. 1 g of copper (II) chloride dihydrate was added thereto, and the mixture was heated and stirred for 1 hour at 100°C. After allowing the mixture to cool to room temperature, the reaction mixture was added to water and was subjected to extraction using ethyl acetate. A combined organic layer was dried using sodium sulfate, and then, was condensed under reduced pressure. The residue was subjected to silicagel column chromatography to obtain yellow solid powder. The powder was washed with hexane to obtain 12 g of 2-(2-ethylsulfanyl-4-trifluoromethyl-phenyl)-6-trifluoromethyl-3H-imidazo[4,5-b]pyridine (hereinafter, referred to as the present condensed heterocyclic compound 59). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
224 mg | To a mixed solution of 300 mg of 1- [3- (ethylsulfonyl) -6-iodoimidazo [1,2-a] pyridin-2-yl] ethan-1-one and 5 ml of dimethylsulfoxide was added 48 mass percent 1 ml of hydrochloric acid was added.After completion of the addition, the reaction mixture was stirred at 80 ° C. for 2 hours. After completion of the stirring, 141 mg of 5- (trifluoromethyl) pyridine-2,3-diamine was added to the reaction mixture at room temperature.After the addition was completed, the reaction mixture was stirred at room temperature for 16 hours. After completion of the reaction, 10 ml of water was added to the reaction mixture at room temperature. After completion of the addition, sodium hydrogencarbonate was added to the reaction mixture for neutralization, followed by extraction with ethyl acetate (20 ml × 2).The obtained organic layer was dehydrated with anhydrous sodium sulfate and dried, and then the solvent was distilled off under reduced pressure. The precipitated solid was filtered off by filtration.The resulting solid was washed with diisopropyl ether to give the desired product 3- [3- (ethylsulfonyl) -6-iodoimidazo [1,2-a] pyridin-2-yl] - 7 - (trifluoromethyl ) Pyrido [2,3-b] pyrazine as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To the solution of I-B (499 mg, 1.51 mmol) in DMA (2.5 mL) at -5 °C was added thionyl chloride (0.14 mL, 1.9 mmol). After stirring for 40 min at -5 °C, a solution of 5- (trifluoromethyl)pyridine-2,3-diamine (295 mg, 1.66 mmol) in DMA (3 mL) was added to this reaction mixture. The reaction mixture was stirred at RT for 18 h. The reaction was quenched with water and extracted with DCM. Solid precipitated out from the organic phase, which was collected via filtration to afford N-(4-(l-((2-amino-5-(trifluoromethyl)pyridin-3- yl)carbamoyl)cyclobutyl)phenyl)-3-chlorobenzamide. MS (EI) m/z 489 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a vial were added l-(4-(methoxycarbonyl)phenyl)cyclobutanecarboxylic acid (25 mg, 0.11 mmol), <strong>[107867-51-6]5-(trifluoromethyl)pyridine-2,3-diamine</strong> (28.4 mg, 0.160 mmol), HATU (60.9 mg, 0.160 mmol), DMF (800 mu) and DIEA (70 mu, 0.40 mmol). The mixture was heated at 130 °C for 20 h. The mixture was filtered and purified by reversed phase HPLC, eluting with ACN/water (0.1percentTFA) to afford the title compound as the TFA salt. MS (EI) m/z 376 [M+H] . |
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