Structure of 120351-94-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Batch number can be found on the product's label following the word 'Batch'.
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CAS No. : | 120351-94-2 |
Formula : | C9H10N2O |
M.W : | 162.19 |
SMILES Code : | N#CC1=CC=CC(OCCN)=C1 |
MDL No. : | MFCD16495888 |
InChI Key : | XRXLMRKNZYUOND-UHFFFAOYSA-N |
Pubchem ID : | 10909877 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.22 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 45.16 |
TPSA ? Topological Polar Surface Area: Calculated from |
59.04 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.78 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.67 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.9 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.56 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.28 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.04 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.44 |
Solubility | 5.89 mg/ml ; 0.0363 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.49 |
Solubility | 5.29 mg/ml ; 0.0326 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.66 |
Solubility | 0.352 mg/ml ; 0.00217 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.81 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.47 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; In 1,4-dioxane; sodium hydroxide; dichloromethane; ethyl acetate; | Step 3 Synthesis of 3-(2-aminoethoxy)benzonitrile: 1.41 g of 3-[2-(t-butoxycarbonylamino)ethoxy]benzonitrile was dissolved in 20 ml of 4 N solution of hydrogen chloride in dioxane, and the solution was stirred at room temperature for 2 hours. The solvent was evaporated. The residue was suspended in dichloromethane, and the obtained suspension was filtered to obtain hydrochloride of the title compound. Yield: 0.89 g (4.48 mmol) (83 %). The hydrochloride was dissolved in 1 N aqueous sodium hydroxide solution. After the treatment with ethyl acetate as the extractant in an ordinary manner, the title compound was obtained. H-NMR (CDCl3) delta 3.10 (2H,t), 4.00 (2H, t), 7.15 (1H, d), 7.17 (1H, s), 7.25 (1H, d), 7.37 (1H, t). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With triethanolamine; acetic anhydride; In pyridine; methanol; ethyl acetate; | Step 1: To a solution of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> (276 mg, 1 mmol, 1.0 equiv) in 5 mL of methanol at room temperature was added TEA (630 muL, 4.5 equiv) and 4-bromophthalic anhydride (227 mg, 1.0 equiv). After stirring at room temperature for 3 h, the solvent was evaporated and the residue was vacuum dried. The residue in 10 mL of pyridine was then treated with 12 mL of acetic anhydride at room temperature overnight. The volatile solvent was evaporated, and the residue was taken up with EtOAc, washed with H2O, dried over MgSO4 and column purified with 1:3 EtOAc/hexanes on silica gel to give 3-[2-(5-bromo-1,3-dioxoisoindolin-2-yl)ethoxy]benzonitrile in 84% yield. LRMS found for C17H12BrN2O3 (M+H)+: 371.05. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 4-methyl-morpholine; In N-methyl-acetamide; ethyl acetate; | Step 4 Synthesis of N-[2-(3-cyanophenoxy)ethyl]-4-cyanobenzamide: 1.13 g (7.68 mmol) of 4-cyanobenzoic acid and 1.6 ml (14.1 mmol) of N-methylmorpholine were dissolved in 30 ml of dimethylformamide. 0.67 ml (7.05 mmol) of ethyl chloroformate was added to the solution under cooling with ice/water. After stirring for 5 minutes, 1.27 g (6.41 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> was added to the reaction mixture, and the obtained mixture was stirred at room temperature for one hour. After the treatment with ethyl acetate as the extractant in an ordinary manner, the title compound was obtained. Yield: 1.29 g (4.43 mmol) (69 %). MS (FAB, m/z) 292 (MH+) H-NMR (CDCl3) delta 3.91 (2H, dt), 4.19 (2H, t), 6.78 (1H, br), 7.14 (1H, d), 7.17 (1H, s), 7.28 (1H, d), 7.39 (1H, t), 7.75 (2H, d), 7.90 (2H, d) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; triethylamine; In N-methyl-acetamide; | Step 3 Synthesis of t-butyl 4-[4-[N-[2-(3-cyanophenoxy)ethyl]carbamoyl]benzenesulfonyl]piperazine-1-carboxylate: 1.41 g (3.79 mmol) of t-butyl (4-carboxybenzenesulfonyl)piperazine-1-carboxylate was stirred in dimethylformamide. 1.3 ml (9.25 mmol) of triethylamine and 0.38 ml (3.95 mmol) of ethyl chloroformate were added to the resultant mixture. After stirring for 5 minutes followed by the addition of 1.02 g (4.61 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong>, the temperature was elevated to room temperature and they were stirred for 2 hours. After the dilution with 1 N hydrochloric acid and extraction with ethyl acetate, the product was treated in an ordinary manner to obtain the title compound. Yield: 1.88 g (3.66 mmol) (97 %) MS (ESI, m/z) 537 (M+Na+) H-NMR (CDCl3) delta 1.40 (9H, s), 2.97 (4H, t), 3.49 (4H, t), 3.91 (2H, dd), 4.19 (2H, t), 7.03 (1H, t), 7.14 (1H, d), 7.17 (1H, s), 7.27 (1H, d), 7.38 (1H, d), 7.78 (2H, d), 7.98 (2H, d) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 1 Synthesis of N-[2-(3-cyanophenoxy)ethyl]-3-cyanobenzamide: The title compound was obtained from 162 mg (1.1 mmol) of 3-cyanobenzoic acid and 163 mg (1.0 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> in the same manner as that of step 4 in Example 1. Yield: 251 mg (0.86 mmol) (86 %) H-NMR (CDCl3) delta 3.92 (2H, dt), 4.19 (2H, t), 6.67 (1H, br), 7.16 (1H, d),7.18 (1H, s), 7.28 (1H, d), 7.40 (1H, t), 7.59 (1H, t), 7.80 (1H, t), 7.80 (1H, d), 8.03 (1H, d), 8.09 (1H, s) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N-methyl-acetamide; | Step 1 Synthesis of 3-[2-(2-naphthalenesulfonylamino)ethoxy]benzonitrile: 163 mg of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> and 0.5 ml of diisopropylethylamine were dissolved in 10 ml of dimethylformamide. A solution of 250 mg (1.1 mmol) of 2-naphthalenesulfonyl chloride in dimethylformamide was added to the obtained solution under cooling with ice, and they were stirred under cooling with ice for 2 hours. The title compound was obtained by the same isolation process as that of step 1 in Example 1 with ethyl acetate as the extractant. Yield: 320 mg (0.91 mmol) (91 %) H-NMR (CDCl3) delta 3.45 (2H, dt), 4.00(2H, t), 5.05(1H, br), 6.96 (1H, s),6.97 (1H, d), 7.20 (1H, d), 7.30 (1H, t), 7.59-7.70 (2H, m), 7.82-7.98(4H, m), 8.46 (1H, s) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; | Step 1 Synthesis of N-[2-(3-cyanophenoxy)ethyl]bromoacetamide: 1.50 g (9.26 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> and 1.77 ml (10.2 mmol) of diisopropylethylamine were dissolved in 15 ml of tetrahydrofuran. A solution of 0.92 ml (11.1 mmol) of bromoacetyl chloride in 5 ml of tetrahydrofuran was added to the obtained solution at 0C, and they were stirred for 8 hours. The solvent was evaporated, and the residue was purified by the silica gel column chromatography to obtain the title compound: Yield: 2.18 g (7.73 mmol) (83 %) MS (ESI, m/z) 305 (M+Na+) H-NMR (CDCl3) delta 3.76(2H, dt), 3.98 (2H, d), 4.08(2H, t), 7.14 (1H, dd),7.16 (1H, s), 7.28 (1H, dd), 7.39 (1H, td) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; ammonia; In ethanol; | Example 27 Synthesis of N-[2-(3-amidinophenoxy)ethyl]-3-(2-aminoethoxy)benzamidine tristrifluoroacetate: 10 ml of ethanol containing 30 % (w/v) of hydrogen chloride was added to 1.75 g (8.84 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong>, and the resultant mixture was stirred at room temperature for 22 hours. The solvent was evaporated under reduced pressure, and the residue was dissolved in 10 ml of 10 % (w/v) solution of ammonia in ethanol. The obtained solution was stirred at room temperature for 31 hours. The solvent was evaporated, and the obtained residue was purified by the reversed-phase high-performance liquid chromatography with silica gel, containing octadodecyl group chemically bonded thereto, as the filler. After the elution with a mixed solvent of water and acetonitrile containing 0.1 % (v/v) of trifluoroacetic acid, the fraction of the intended product was freeze-dried to obtain the title compound. Yield: 134 mg (0.195 mmol) (2.2 %). MS (ESI, m/z) 342 (MH+) H-NMR (DMSO-d6) delta 3.20-3.23 (2H, m), 3.81-3.85 (2H, t), 4.24 (2H, dd), 4.38 (2H, dd), 7.25-7.40 (4H, m), 7.50-7.60 (4H, m), 8.18 (2H, brs), 9.60 (4H, t). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 2 Synthesis of N-[2-(3-cyanophenoxy)ethyl]-(E)-3-(4-cyanophenyl)-2-propenamide: The title compound was obtained from 173 mg (1 mmol) of (E)-3-(4-cyanophenyl)acrylic acid and 146 mg (0.9 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> in the same manner as that of step 4 in Example 1. Yield: 254 mg (0.8 mmol) (89 %) H-NMR (CDCl3) delta 3.82 (2H, q), 4.15 (2H, t), 6.10 (1H, br), 6.50 (1H, d), 7.15 (1H, d), 7.18 (1H, s), 7.25 (1H, d), 7.40 (1H, t), 7.60 (2H, d), 7.68 (1H, d), 7.70 (2H, d) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; | Step 1 Synthesis of N-[2-(3-cyanophenoxy)ethyl]-(1S)-10-camphorsulfonamide: 700 mg (4.32 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> was dissolved in 20 ml of DMF. 0.75 ml (4.32 mmol) of diisopropylethylamine and a solution of 1.08 g (4.32 mmol) of (1S)-(+)-10-camphorsulfonyl chloride in 5 ml of DMF were added to the solution at 0C, and they were stirred for 4 hours. The crude product was obtained by the same isolation process as that of step 1 in Example 1 with ethyl acetate as the extractant. After the purification by the silica gel column chromatography, the title compound was obtained. Yield: 1.41 g (3.75 mmol) (87 %) MS (ESI, m/z) 377 (MH+) H-NMR (CDCl3) delta 0.88 (3H, s), 1.04 (3H, s) 1.47 (1H, ddd), 1.89-2.15(5H, m), 2.33 (1H, td), 2.98 (1H, d), 3.46 (1H, d), 3.59 (2H, dt), 4.14 (2H, t), 6.00(1H, t), 7.15 (1H, d), 7.18(1H, s), 7.26 (1H, d), 7.39 (1H,t) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 1 Synthesis of N-[2-(3-cyanophenoxy)ethyl]-(1R)-10-camphorsulfonamide: The title compound was obtained from 700 mg (4.32 mmol) of 3-(2-aminoethoxy)benzonitrile and 1.08 g (4.32 mmol) of (1R)-(-)-10-camphorsulfonyl chloride in the same manner as that of step 1 in Example 106. Yield: 1.33 g (3.54 mmol) (82 %) MS (ESI, m/z) 377 (MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 1 Synthesis of 3-[2-(4-bromobenzenesulfonylamino)ethoxy]benzonitrile: The title compound was obtained from 460 mg (1.8 mmol) of 4-bromobenzenesulfonyl chloride and 294 mg (1.8 mmol) of <strong>[120351-94-2]3-(2-aminoethoxy)benzonitrile</strong> in the same manner as that of step 1 in Example 110. Yield: 604 mg (1.7 mmol) (94 %) H-NMR (CDCl3) delta 3.40 (2H, dt), 4.02(2H, t), 5.00(1H, br), 7.03 (1H, d),7.50 (1H, s), 7.27 (1H, d), 7.37 (1H, t), 7.65 (2H, d), 7.75 (2H, d) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25% | In a 250 mL round bottom flask, N-(3,5-difluoro-4-morpholinyl)-3-carbonylbutylamine (0.79 g, 2.65 mmol) was added,2-(3-Cyanophenoxy)ethanamine (0.93 g, 5.28 mmol), tetraisopropyl titanate (6.3 mL) and xylene (25 mL) were heated to 165 C. for 24 h.The reaction system was cooled to room temperature, toluene (60 mL) and saturated ammonium chloride solution (60 mL) were added, and the mixture was reacted overnight at room temperature.After the reaction was completed, it was filtered and the filtrate was extracted with dichloromethane (20 mL x 4).The organic layers were combined, washed with saturated brine (30 mL×2) and dried over anhydrous sodium sulfate.The crude product was purified by column chromatography (petroleum ether/ethyl acetate (V/V) = 1/2) to give a yellow solid (0.29 g, 25%).Suggest an edit |