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Chemical Structure| 13472-79-2 Chemical Structure| 13472-79-2

Structure of 5-Iodopyridin-2(1H)-one
CAS No.: 13472-79-2

Chemical Structure| 13472-79-2

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Product Details of [ 13472-79-2 ]

CAS No. :13472-79-2
Formula : C5H4INO
M.W : 221.00
SMILES Code : IC1=CNC(=O)C=C1
MDL No. :MFCD00234058
InChI Key :ZDJUNNCVIDKJAN-UHFFFAOYSA-N
Pubchem ID :459500

Safety of [ 13472-79-2 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H332-H335
Precautionary Statements:P261-P280-P305+P351+P338

Computational Chemistry of [ 13472-79-2 ] Show Less

Physicochemical Properties

Num. heavy atoms 8
Num. arom. heavy atoms 6
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 1.0
Num. H-bond donors 1.0
Molar Refractivity 39.78
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

32.86 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.39
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

0.41
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

0.98
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

1.21
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.56
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

1.31

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.02
Solubility 2.09 mg/ml ; 0.00947 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-0.67
Solubility 47.6 mg/ml ; 0.215 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-2.89
Solubility 0.285 mg/ml ; 0.00129 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-7.36 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.16

Application In Synthesis of [ 13472-79-2 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 13472-79-2 ]

[ 13472-79-2 ] Synthesis Path-Downstream   1~35

  • 2
  • [ 20511-12-0 ]
  • [ 13472-79-2 ]
  • 3
  • [ 13472-79-2 ]
  • [ 75-30-9 ]
  • 5-iodo-1-isopropylpyridin-2(1H)-one [ No CAS ]
YieldReaction ConditionsOperation in experiment
67% Step 1: 5-iodo-l-isopropylpyridin-2(lH)-one DME/reflux/3 hTo a stirred solution <strong>[13472-79-2]5-iodopyridin-2-ol</strong> (0.4 g, 1.80 mmol) in DME (10 mL) was added t-BuOK (0.604 g, 5.4 mmol). The mixture was stirred for 30 min at rt, K2CO3 (0.621 g, 4.5 mmol) and 2-iodopropane (0.35 mL, 3.6 mmol) were added, and the reaction was heated at reflux for about 3 h. The reaction mixture was diluted with water (30 mL) and extracted with ethyl acetate (2 x 100 mL). The combined organic extracts were washed with brine solution (10 mL), dried over Na2S04 andconcentrated under vacuum to obtain crude product. The crude product was purified by flash chromatography (silica gel, 60-120?) using 10% ethyl acetate in hexane as eluent to afford 5-iodo-l-isopropylpyridin-2(lH)-one as an off-white solid (0.41 g, 67% yield). ? NMR (400 MHz, DMSO-d6): ? 7.90 (s, 1H), 7.49 (dd, 1H), 6.21 (d, 1H), 4.94 (t, 1H), 1.25 (t, 6H), LC-MS m/z calcd for [M+H]+ 263.98, found 264.0.
  • 4
  • [ 13472-79-2 ]
  • [ 542-69-8 ]
  • 1-butyl-5-iodo-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 5
  • [ 13472-79-2 ]
  • [ 629-27-6 ]
  • 5-iodo-1-octyl-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 6
  • [ 13472-79-2 ]
  • [ 100-44-7 ]
  • 1-benzyl-5-iodo-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 7
  • [ 13472-79-2 ]
  • [ 75-03-6 ]
  • 1-ethyl-5-iodo-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 8
  • [ 13472-79-2 ]
  • [ 107-08-4 ]
  • 5-iodo-1-propyl-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 10
  • [ 13472-79-2 ]
  • [ 74-88-4 ]
  • [ 60154-05-4 ]
  • 15
  • 6-hydroxy-<3>pyridylmercury(1+) chloride [ No CAS ]
  • [ 13472-79-2 ]
  • 16
  • [ 1458-63-5 ]
  • [ 13472-79-2 ]
  • 5-iodo-1-(3-piperidin-1-yl-propyl)-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 17
  • [ 13472-79-2 ]
  • [ 1932-03-2 ]
  • 5-iodo-2-(2-piperidin-1-yl-ethoxy)-pyridine [ No CAS ]
  • 18
  • [ 13472-79-2 ]
  • [ 1932-03-2 ]
  • 5-iodo-1-(2-piperidin-1-yl-ethyl)-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 19
  • [ 13472-79-2 ]
  • 5-(1-phenyl-1<i>H</i>-benzoimidazol-5-yl)-1-(2-piperidin-1-yl-ethyl)-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 20
  • [ 13472-79-2 ]
  • 1-Phenyl-5-[6-(2-piperidin-1-yl-ethoxy)-pyridin-3-yl]-1H-benzimidazole [ No CAS ]
  • 21
  • [ 13472-79-2 ]
  • 5-(1-phenyl-1<i>H</i>-benzoimidazol-5-yl)-1-(3-piperidin-1-yl-propyl)-1<i>H</i>-pyridin-2-one [ No CAS ]
  • 22
  • [ 13472-79-2 ]
  • (5-iodo-2-oxo-2<i>H</i>-[1]pyridyl)-acetic acid ethyl ester [ No CAS ]
  • 24
  • [ 13472-79-2 ]
  • (3,5-diiodo-2-oxo-2<i>H</i>-[1]pyridyl)-acetic acid ethyl ester [ No CAS ]
  • 25
  • [ 504-29-0 ]
  • [ 13472-79-2 ]
  • 26
  • [ 13472-79-2 ]
  • dry-MeOH [ No CAS ]
  • tetrakis-triphenylphosphane-palladium [ No CAS ]
  • [ 274251-56-8 ]
  • [ 76053-43-5 ]
YieldReaction ConditionsOperation in experiment
With sodium carbonate; In 1,4-dioxane-and; water; 10a 5-(4-chloro-phenyl)-pyridin-2-ol Under an N2 atmosphere 21.7 mL 2 M Na2CO3 solution and 250 mg (0.22 mmol) tetrakis-triphenylphosphane-palladium are added to a solution of 8.0 g (21.7 mmol) <strong>[13472-79-2]5-iodo-pyridin-2-ol</strong> and 3.81 g (23.9 mmol) 4-chlorophenyl-boric acid in 120 mL 1,4-dioxane-and 30 mL dry-MeOH and the reaction mixture is stirred for 19 h at 110 C. The mixture is evaporated down i.vac., the residue is combined with water, the precipitate is filtered off, washed with water and dried at 40 C. in the circulating air dryer until a constant weight is obtained. Yield: 3.8 g (85.1% of theory). C11H8ClNO (M=205.646).
  • 27
  • [ 13472-79-2 ]
  • [ 1027725-30-9 ]
  • [ 1027725-73-0 ]
YieldReaction ConditionsOperation in experiment
With copper(l) iodide; tetrabutyl ammonium fluoride; triethylamine;tetrakis(triphenylphosphine) palladium(0); In tetrahydrofuran; N,N-dimethyl-formamide; at 85℃; for 2.16667h; Example 443 (S)-5-[(6-hydroxypyridin-3-yl)ethynyl]-N-[methyl(oxo)phenyl-lambda6-sulfanylidene]nicotinamideA solution of (S)-N-[methyl(oxo)phenyl-lambda6-sulfanylidene]-5-[(trimethylsilyl)ethynyl]- nicotinamide (150 mg, 0.42 mmol) and <strong>[13472-79-2]2-hydroxy-5-iodopyridine</strong> (105.4 mg, 0.46 mmol) in DMF (2.1 mL) was degassed (vacuum and argon). The resulting solution was treated tetrakis(triphenylphosphine)palladium(0) (24 mg, 0.021 mmol), triethylamine (0.08 mL, 0.55 mmol), and CuI (8 mg, 0.042 mmol). The reaction mixture was then heated to 85 0C and tetrabutylammonium fluoride (1.0 M solution in THF, 0.46 mL, 0.46 mmol) was added dropwise over 10 min. The reaction was allowed to be stirred at 85 0C for 2 hours. The reaction mixture was partitioned between EtOAc and H2O. The organic extracts and associated solid were collected and concentrated. The residue was purified by chromatography (silica gel, gradient elution MeOH-CHCl3: 1 : 100-1 :4). The product containing fractions were collected, concentrated, and the brown solid residue was triturated with a combination of MeOH and EtOAc. The resulting mixture was filtered and the filtrate allowed to stand at room temperature. The solid which precipitated from solution was collected and dried to give the title compound as a white solid (11 mg).
  • 28
  • [ 13472-79-2 ]
  • [ 1051316-29-0 ]
  • [ 1051316-30-3 ]
YieldReaction ConditionsOperation in experiment
Example 128; l-((3-methoxyquinolin-6-yl)methyl)-5-(4-methylthiophen-2-yl)pyridin-2(lH)- one(1) 5-Iodo-l-((3-methoxyquinolin-6-yl)methyl)pyridin-2(lH)-one. To a solution of 6-(chloromethyl)-3-methoxyquinoline (0.042 g, 0.20 mmol) in DMF (8 mL) in a flame dried 25 mL round bottom flask at 0 C was added sodium hydroxide (0.011 g, 0.26 mmol). After stirred for 30 min, <strong>[13472-79-2]5-iodopyridin-2-ol</strong> (0.058 g, 0.26 mmol) was added. The ice bath was removed and the reaction mixture was stirred at rt under N2 for 20 h. The reaction was quenched with water and the resulting mixture was partitioned between EtOAc/sat. NaHCO3. The aqueous layer was extracted with EtOAc (2 x 10 mL). The combined organic <n="177"/>layers were washed with water, brine, dried over MgSO4 and concentrated. The crude product was purified using SiO2 chromatography (Teledyne Isco RediSep, P/N 68-2203-026, 12 g SiO2, isocratic 3% MeOH in DCM with 17% EtOAc, Flow = 30 mL/min). A peak at 15 min was collected. The solvent was removed in vacuo to afford the desired product as white solid (42.0 mg). MS (ESI pos. ion) m/z (M+l): 393.4. Calc'd exact mass for Ci6H13IN2O2: 392.19. 1H NMR (300 MHz, CHLOROFORM-d) delta ppm 3.95 (s, 3 H) 5.26 (s, 2 H) 6.48 (d, J=9.65 Hz, 1 H) 7.37 (d, J=2.78 Hz, 1 H) 7.41 - 7.51 (m, 2 H) 7.54 (d, J=2.19 Hz, 1 H) 7.65 (s, 1 H) 8.04 (d, J=8.48 Hz, 1 H) 8.68 (d, J=2.92 Hz, 1 H).
  • 29
  • [ 13472-79-2 ]
  • [ 1066-54-2 ]
  • [ 1064706-78-0 ]
  • 30
  • [ 13472-79-2 ]
  • [ 75-33-2 ]
  • [ 18108-74-2 ]
YieldReaction ConditionsOperation in experiment
With copper(l) iodide; potassium carbonate; In ethylene glycol; isopropyl alcohol; at 120℃; for 2h;Microwave irradiation; Example 6a; 2-Bromo-5-isopropylsulfonyl-pyridine (Compound III-10a)Scheme ViaCompound 111-10a Method F-lStep 1: 5-Isopropylsulfanylpyridin-2-ol[00160] <strong>[13472-79-2]5-iodopyridin-2-ol</strong> (1 g, 4.525 mmol) , propane-2-thiol (689.3 mg, 840.6 mu, 9.050 mmol) , ethylene glycol (842.9 mg, 757.3 mu, 13.58 mmol) , Cul (172.4 mg, 0.9050 mmol) and potassium carbonate (1.877 g, 13.58 mmol) in IPA (7 mL) were heated under microwave conditions at 120 C for 2 hours. The mixture was filtered through celite washing with DCM and the filtrate concentrated in vacuo . The residue was purified by column chromatography (ISCO Companion, 40 g column, elueting with 0 to 100%EtO Ac/Petroleum Ether, loaded in DCM). The fractions were combined and concentrated in vacuo and the residue redissolved in EtO Ac (10 mL) and stirred with 0.5 g of 3- Mercaptopropyl ethyl sulfide Silica for 45 minutes. The silica was removed by filtration and the solvent removed in vacuo to give the sub-title compound as a beige oil which was used without further purification.
  • 31
  • [ 13472-79-2 ]
  • [ 1349770-66-6 ]
  • 32
  • [ 13472-79-2 ]
  • [ 1349770-40-6 ]
  • 33
  • [ 13472-79-2 ]
  • [ 1349770-67-7 ]
  • 34
  • [ 13472-79-2 ]
  • [ 1245648-96-7 ]
  • 35
  • [ 13472-79-2 ]
  • [ 1349770-82-6 ]
 

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