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CAS No. : | 1480-64-4 | MDL No. : | MFCD04114144 |
Formula : | C5H3ClFN | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | IHGMHTQDGNVKTA-UHFFFAOYSA-N |
M.W : | 131.54 | Pubchem ID : | 2762818 |
Synonyms : |
|
Num. heavy atoms : | 8 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 0 |
Num. H-bond acceptors : | 2.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 29.21 |
TPSA : | 12.89 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -5.98 cm/s |
Log Po/w (iLOGP) : | 1.58 |
Log Po/w (XLOGP3) : | 1.58 |
Log Po/w (WLOGP) : | 2.29 |
Log Po/w (MLOGP) : | 1.51 |
Log Po/w (SILICOS-IT) : | 2.51 |
Consensus Log Po/w : | 1.89 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 2.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.21 |
Solubility : | 0.819 mg/ml ; 0.00622 mol/l |
Class : | Soluble |
Log S (Ali) : | -1.46 |
Solubility : | 4.55 mg/ml ; 0.0346 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -2.88 |
Solubility : | 0.172 mg/ml ; 0.00131 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.57 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71.9% | With cesium fluoride In dimethyl sulfoxide at 110℃; for 20 h; | General procedure: To a solution of 2,3-dichloropyridine(1.00 g, 6.76 mmol) in DMSO (33.8 ml) was added CsF (2.053 g, 13.51mmol) at room temperature. The mixture was stirred at 110 °C under air for 20h. The mixture was quenched with water at room temperature and extracted withEtOAc. The organic layer was separated, washed with water and brine, dried overNa2SO4 and concentrated in vacuo. The residue waspurified by column chromatography (silica gel, eluted with EtOAc in hexane) togive 3-chloro-2-fluoropyridine (0.639 g, 4.86 mmol, 71.9 percent) as colorlessoil. Thecompound 3B'-8B' were prepared in amanner similar to that described for 2B'. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With Hexafluorobenzene; tetra-n-butylammonium cyanide; In dimethylsulfoxide-d6; at 20℃; for 24h; | General procedure: In Situ TBAF* with DS-2 [0087] It was found that pre-formation of TBAF* is not necessary to facilitate fluorination at room temperature. Weighing the substrate and TBACN into the reaction vessel followed by DMSO and the appropriate amount of C6F6 furnishes the desired product in excellent yield (Table 1). [TABLE-US-00001] TABLE 1 Fluorination of DS-2 with in situ generated anhydrous TBAF* Entry TBAF* Equiv Yield 1 2.0 >99% 2 2.0 >99% 3 4.0 >99% 4 4.0 >99% In addition to the model substrate DS-2, other chloropicolinates, as well as simple chloropyridines, underwent fluorination with the disclosed methods. 5-Chloropicolinates went to full conversion as demonstrated in Scheme 2 (top row). 5-Fluoropicolinic acid, however, was only formed in small quantities presumably due to deprotonation by fluoride thereby inactivating the substrate to nucleophilic aromatic substitution. Simpler chloropyridines were less effective as substrates for this method in accordance to the reactivity observed by DiMagno et al. 4,5-Dichloro-6-arylpicolinates (Scheme 2, bottom row) demonstrated fluorination first at the more activated 4-position followed by fluorination of the less activated 5-position, although the total yield was diminished due to the production of the undesired bis-cyanopicolinate product. [0091] |
94%Spectr. | With tetramethylammonium fluoride; In N,N-dimethyl-formamide; at 20℃; for 24h; | General procedure: General Procedure E: General Experimental Details for NMR Yields Reported in Figure 3. In a drybox, anhydrous NMe4F (18.6 mg, 0.2 jumol, 2 equiv) and the appropriate aryi chloride or nitroarene substrate (0.1 nimol, 1 equiv) were weighed into a 4 mL vial equipped with a micro stirbar. DMF (0.5 mL) was added, and the viai was removed from the drybox and stirred at room temperature unless otherwise noted for 24 hours. The reaction was cooled to room temperature and an internal standard (1, 3, 5-trifluorobenzene, 100 iL of a 0.5 M solution in toluene) was added. An aliquot was removed for analysis by 59F NMR spectroscopy and GCMS. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71.9% | With cesium fluoride; In dimethyl sulfoxide; at 110℃; for 20h; | General procedure: To a solution of 2,3-dichloropyridine(1.00 g, 6.76 mmol) in DMSO (33.8 ml) was added CsF (2.053 g, 13.51mmol) at room temperature. The mixture was stirred at 110 C under air for 20h. The mixture was quenched with water at room temperature and extracted withEtOAc. The organic layer was separated, washed with water and brine, dried overNa2SO4 and concentrated in vacuo. The residue waspurified by column chromatography (silica gel, eluted with EtOAc in hexane) togive 3-chloro-2-fluoropyridine (0.639 g, 4.86 mmol, 71.9 %) as colorlessoil. Thecompound 3B'-8B' were prepared in amanner similar to that described for 2B'. |
With cesium fluoride; In 1-methyl-pyrrolidin-2-one; at 150℃; for 23h; | 2,3-Dichloropyridine (107.3 g) and cesium fluoride (268.2 g) were suspended in N-methyl-2-pyrrolidinone (270 ml) and stirred at 150C for 23 hours. After cooling off, the reaction mixture was poured into water, filtered through Celite, and the filtrate was extracted with ether. The organic layer was washed with saturated brine, dried over anhydrous sodium sulfate and condensed under reduced pressure. The resulting oily residue was distilled to provide 3-chloro-2-fluoropyridine (76.14 g) as a colorless oily substance. Boiling point: 91 - 95C (15 mmHg) | |
With cesium fluoride; In 1-methyl-pyrrolidin-2-one; at 180℃; for 23h; | 107.3 g of 2,3-dichloropyridine was dissolved in 270 mL of N-methylpiperidone, and 268.25 g of cesium fluoride was added thereto, and stirred in a nitrogen atmosphere at 180C for 23 hours. One L of water was added to the solution, and filtered through Celite, and the filtrate was extracted twice with diethyl ether. The organic layers were combined, washed with saturated saline water, and dried with sodium sulfate. The solvent was evaporated off under reduced pressure, and the residue was purified through distillation (91 to 95C/15 mmHg) to obtain 76.14 g of the entitled compound as a colorless liquid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of diisopropylamine (97 ml) in THF (1200 ml), n butyl lithium (2.66M-hexane solution, 239 ml) was added at -78C. The reaction liquid was stirred for 30 minutes at said temperature, and into which a solution of the above compound (76.14 g) in THF (300 ml) was added dropwise, followed by an hour's stirring. Dry ice was added to the reaction liquid, and after the temperature of the system was raised to the ambient level, the reaction mixture was poured into water and condensed under reduced pressure. The residue was extracted with ether. Hydrochloric acid was added to the aqueous phase to adjust the latter's pH to 2, followed by extraction with ethyl acetate. The organic layer was combined with the extract and washed with saturated brine, dried over anhydrous magnesium sulfate and condensed under reduced pressure. The residue was recrystallized from ether-hexane to provide 3-chloro-2-fluoroisonicotinic acid (55.9 g). | ||
In a nitrogen atmosphere, 97 mL of diisopropylamine was dissolved in 1.2 L of tetrahydrofuran, and at -70C, 239 mL of 2.66 M n-butyllithium-hexane solution was dropwise added thereto. The solution was stirred for 30 minutes, and then tetrahydrofuran (300 mL) solution of 76.14 g of the compound obtained in the above 1 was dropwise added thereto at -70C. This was stirred for 1 hour, and dry ice was added to the reaction solution, heated up to room temperature, and 1 L of water and diethyl ether were added thereto. Its pH was controlled to 10 with aqueous 4 M sodium hydroxide solution added to it. Then, its pH was controlled to 1 to 2 with concentrated hydrochloric acid added to it, and this was extracted three times with diethyl ether. The organic layers were combined, washed with saturated saline water, and dried with sodium sulfate. The solvent was evaporated off under reduced pressure, the residue was crystallized from ether-hexane to obtain 55.9 g of the entitled compound as a pale yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With potassium carbonate; In N,N-dimethyl-formamide; at 100℃; for 16h; | PREPARATION 51Ethyl 1-(3-Chloro-2-pyridyl)-4-formyl-pyrazole-3-carboxylate; To a solution of ethyl 4-formyl-pyrazole-3-carboxylate (1.70 g, 10.1 mmol) and <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (1.99 g, 15.1 mmol) in dimethylformamide (20 mL) is added potassium carbonate (2.80 g, 20.2 mmol) and the mixture is stirred at 100 C. for 16 hours. After completion, the reaction mixture is partitioned between water (25 mL) and ethyl acetate (25 mL). The aqueous layer is extracted with ethyl acetate (3×25 mL) and the combined organic extracts are dried over sodium sulfate, concentrated in vacuo and purified by column chromatography over silica gel eluting with hexane/ethyl acetate (50:50) to yield 1.5 g (54%) of the title compound. MS (m/z): 280 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | PREPARATION 461-(3-Chloro-2-pyridyl)-3-methyl-pyrazole-4-carbaldehyde; To a solution of 3-methyl-pyrazole-4-carbaldehyde (0.5 g, 4.5 mmol) in dry dimethylformamide (15 mL) is added potassium carbonate (2.5 g, 18 mmol,) at room temperature. The reaction mixture is stirred at 40 C. for 30 min and then 1-fluoro-2-chloropyridine (0.77 g, 6 mmol,) is added. The reaction mixture is heated at 70 C. for 16 h. After completion, the reaction mixture is cooled to room temperature, diluted with water and then extracted with ethyl acetate. The organic layer is dried over sodium sulfate, filtered and concentrated under reduce pressure. The crude mixture is purified by chromatography on silica gel eluting with hexane/ethyl acetate (75:25, 65:35) to yield 0.525 g (52%) of the title compound. MS (m/z): 222 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
10% | With caesium carbonate; In 1-methyl-pyrrolidin-2-one; at 100 - 130℃; for 3h; | STEP 4. 2-(l-(3-CHLOROPYRIDTN-2-YL)AZETIDrN-3-YL)-5-METHYL-lH- BENZO[ ]IMIDAZOLE; [00177] To a mixture of cesium carbonate (435 mg, 1.34 mmol) and 2-(azetidin-3-yl)-5- methyl-lH-benzo[i/] imidazole dihydrochloride (0.100 g, 0.384 mmol) was added NMP (1 mL) and <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (0.105 g, 0.798 mmol). The reaction mixture was degassed and heated to 100 C for lh, then heated to 130 C for 2h. The reaction was diluted with EtOAc. The organic phase was washed with water (2 x), brine (1 x), dried over MgS04, filtered, and concentrated. Purification by flash column chromatography on silica gel (30% to 90% EtOAc in hexanes) followed by purification by reverse phase HPLC (10% to 50% water/MeCN followed by neutralization of the TFA salt with saturated NaHCOs) gave 2-(l-(3-chloropyridin-2- yl)azetidin-3-yl)-5-methyl-lH-benzo[i/]imidazole (0.011 g, 0.037 mmol, 10% yield) as a dark yellow foam. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | A solution of d8-isopropyl alcohol (4.71 mL, 61.5 mmol) in anhydrous THF (10 mL) was added slowly over 1 min to a suspension of NaH (60% in mineral oil) (2.46 g, 61.5 mmol) in anhydrous THF (50 mL). After 10 mins a solution of <strong>[1480-64-4]2-fluoro-3-chloropyridine</strong> (5.05 g, 38.4 mmol) in THF (10 mL) was added over 5 mins at 5 C. (ice bath). The reaction was then warmed to room temperature stirred for 18 hours. The reaction was diluted with THF (20 mL), cooled to 5 C. (ice bath) and quenched with water (50 mL). The mixture was extracted with EtOAc (50 mL). Brine was added to aid the separation. The organics were dried over magnesium sulfate, filtered, and concentrated in vacuo to afford a crude oil which was purified by silica gel chromatography eluting with 0 to 30% EtOAc in heptane to yield the title compound as a colourless oil (5.37 g, 53% yield):1H NMR (400 MHz, CDCl3): delta 6.78-6.81 (m, 1H), 7.60-7.62 (m, 1H), 8.03-8.04 (m, 1H).LCMS Rt=1.41 minutes. Molecular ion not observed. | |
53% | With sodium hydride; In tetrahydrofuran; mineral oil; at 5 - 20℃; for 18h; | A solution of d8-isopropyl alcohol (4.71 mL, 61 .5 mmol) in anhydrous THF (10 mL) was added slowly over 1 min to a suspension of NaH (60% in mineral oil) (2.46 g, 61 .5 mmol) in anhydrous THF (50 mL). After 10 minutes a solution of 2-fluoro-3- chloropyridine (5.05 g, 38.4 mmol) in THF (10 mL) was added over 5 minutes at 5 C (ice bath). The reaction was then warmed to room temperature and stirred for 18 hours. The reaction was diluted with THF (20 mL), cooled to 5 C (ice bath) and quenched with water (50 mL). The mixture was extracted with EtOAc (50 mL) and brine. The organic layer was dried over magnesium sulfate, filtered, and concentrated in vacuo to afford a crude oil which was purified by silica gel column chromatography eluting with 0 to 30% EtOAc in heptane to yield the title compound as a colourless oil (5.37 g, 53%). 1H NMR (400 MHz, CDCI3): delta ppm 6.78-6.81 (m, 1 H), 7.60-7.62 (m, 1 H), 8.03-8.04 (m, 1 H). LCMS Rt = 1 .41 minutes MS m/z no mass ion observed |
Preparation 473-Chloro-2-d7-isopropoxypyhdineA solution of d -isopropyl alcohol (4.71 mL, 61 .5 mmol) in anhydrous THF (10 mL) was added over 1 minute to a suspension of NaH (60% in mineral oil) (2.46 g, 61 .5 mmol) in anhydrous THF (50 mL). After 10 minutes, a solution of <strong>[1480-64-4]2-fluoro-3-chloropyridine</strong> (5.05 g, 38.4 mmol) in THF (10 mL) was added over 5 minutes at 5 C (ice bath). The reaction was then warmed to room temperature stirred for 18 hours. The reaction was diluted with THF (20 mL), cooled to 5 C (ice bath) and quenched with water (50 mL). The mixture was extracted with EtOAc (50 mL). Brine was added to aid the separation. The organics were dried over magnesium sulfate, filtered, and concentrated in vacuo to afford a crude oil which was purified by silica gel chromatography eluting with 0 to 30% EtOAc in heptane to yield the title compound as a colourless oil (5.37 g).1H NMR (400 MHz, CDCI3): delta 6.78-6.81 (m, 1 H), 7.60-7.62 (m, 1 H), 8.03-8.04 (m, 1 H). LCMS Rt = 1 .41 minutes. Molecular ion not observed. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With caesium carbonate;copper(l) iodide; 1,10-Phenanthroline; In N,N-dimethyl-formamide; at 80℃; for 2h;Inert atmosphere; | (1f) Methyl 3-({6-[(3-chloropyridin-2-yl)oxy]-1-methyl-1H-benzimidazol-2-yl}methoxy)benzoate A solution of methyl 3-[(6-hydroxy-1-methyl-1H-benzimidazol-2-yl)methoxy]benzoate produced in Example (1e) (3.12 g, 10 mmol), <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (1.45 g, 11 mmol), copper iodide (0.19 g, 1.0 mmol), 1,10-phenanthroline (0.18 g, 1.0 mmol) and cesium carbonate (9.77 g, 30 mmol) in DMF (50 mL) was stirred in a nitrogen atmosphere at 80C for two hours. After leaving to cool, a saturated ammonium chloride aqueous solution (200 mL) was added to the reaction mixture, followed by extraction with ethyl acetate (200 mL). Then, the organic layer was washed with water (200 mL) twice and dried over anhydrous sodium sulfate. After concentration under reduced pressure, the residue was purified by silica gel chromatography (methylene chloride/methanol, 95:5) to obtain the title compound (2.46 g, 58%) as a white solid. 1H-NMR (400 MHz, CDCl3): delta ppm: 3.87 (3H, s), 3.93 (3H, s), 5.42 (2H, s), 6.98 (1H, dd, J = 4.7, 7.4 Hz), 7.10 (1H, dd, J = 2.4, 9.0 Hz), 7.22 (1H, d, J = 2.0 Hz), 7.30 (1H, dd, J = 1. 0, 8.6 Hz), 7.38 (1H, t, J = 7.8 Hz), 7.70 (1H, d, J = 7.4 Hz), 7.72-7.73 (1H, m), 7.79 (1H, dd, J = 1.6, 7.4 Hz), 7.80 (1H, d, J = 8.6 Hz), 8.02 (1H, dd, J = 1.6, 4.7 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With copper(l) iodide; 1,10-Phenanthroline; caesium carbonate; In N,N-dimethyl-formamide; at 80℃; for 2h;Inert atmosphere; | A solution of methyl 3-[(6-hydroxy-1-methyl-1H-benzimidazol-2-yl)methoxy]benzoate (3.12 g, 10 mmol), <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (1.45 g, 11 mmol), copper iodide (0.19 g, 1.0 mmol), 1,10-phenanthroline (0.18 g, 1.0 mmol) and cesium carbonate (9.77 g, 30 mmol) in DMF (50 mL) was stirred in a nitrogen atmosphere at 80C for two hours. After leaving to cool, a saturated ammonium chloride aqueous solution (200 mL) was added to the reaction mixture, followed by extraction with ethyl acetate (200 mL). Then, the organic layer was washed with water (200 mL) twice and dried over anhydrous sodium sulfate. After concentration under reduced pressure, the residue was purified by silica gel chromatography (methylene chloride/methanol, 95:5) to obtain the title compound (2.46 g, 58%) as a white solid. 1H-NMR (400 MHz, CDCl3) : delta ppm: 3.87 (3H, s), 3.93 (3H, s), 5.42 (2H, s), 6.98 (1H, dd, J = 4.7, 7.4 Hz), 7.10 (1H, dd, J = 2.4, 9.0 Hz), 7.22 (1H, d, J = 2.0 Hz), 7.30 (1H, dd, J = 1.0, 8.6 Hz), 7.38 (1H, t, J = 7.8 Hz), 7.70 (1H, d, J = 7.4 Hz), 7.72-7.73 (1H, m), 7.79 (1H, dd, J = 1.6, 7.4 Hz), 7.80 (1H, d, J = 8.6 Hz), 8.02 (1H, dd, J = 1.6, 4.7 Hz). |
58% | With copper(l) iodide; 1,10-Phenanthroline; caesium carbonate; In N,N-dimethyl-formamide; at 80℃; for 2h;Inert atmosphere; | General procedure: A solution of 13 (3.12g, 10.0mmol), 2-fluoro or 2-bromo substituted pyridine (11.0mmol), CuI (0.19g, 1.00mmol), 1,10-phenanthroline (0.18g, 1.00mmol) and Cs2CO3 (9.77g, 30mmol) in DMF (50mL) was stirred under N2 at 80C for 2h. Aqueous NH4Cl solution (10%) was added to the cooled reaction mixture, and the mixture was extracted with EtOAc several times. The combined organic layers were washed with water and dried over anhydrous Na2SO4. After concentration under reduced pressure, the residue was purified by silica gel chromatography to obtain 14. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 97 (4S,6S)-4-(5-((3-chloropyridin-2-yl)oxy)-2-fluorophenyl)-4-(fluoromethyl)-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-2-amine The title compound was synthesized using steps and procedures analogous to those described in Method M (Example 92) above, but using <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (Matrix) in step 5. MS m/z=422 [M]+. Calculated for C17H13ClF5N3O2: 421.75. 1H NMR (300 MHz, CHLOROFORM-d) ppm 2.19 (t, J=13.15 Hz, 1H) 2.69 (d, J=13.74 Hz, 1H) 4.18 (d, J=8.92 Hz, 3H) 4.34-4.58 (m, 1H) 4.61-4.86 (m, 1H) 6.98 (dd, J=7.38, 4.90 Hz, 1H) 7.12 (d, J=8.62 Hz, 2H) 7.30 (d, J=7.31 Hz, 2H) 7.76 (d, J=7.60 Hz, 1H) 8.00 (d, J=4.82 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; In dimethyl sulfoxide; at 20 - 100℃; | Intermediate 33A: Diethyl 2-(3-chloropyridin-2-yl)malonate A mixture of <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (5.00 g, 38.0 mmol), diethyl malonate (14.6 g, 91 mmol) and Cs2CO3 (29.7 g, 91 mmol) in DMSO (42 mL) was heated at 100 C. for 7 h. After stirring overnight at room temperature, the mixture was diluted with EtOAc, washed twice with water, then with brine. The combined aqueous layers were extracted with EtOAc, and the combined organic phases were dried and concentrated to give crude diethyl 2-(3-chloropyridin-2-yl) malonate as a colorless oil, used without further purification. Mass spectrum m/z 272 (M+H)+. | |
With caesium carbonate; In dimethyl sulfoxide; at 100℃; for 7h; | A mixture of <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (5.00 g, 38.0 mmol), diethyl malonate (14.61 g, 91 mmol) and Cs2C03 (29.7 g, 91 mmol) in DMSO (42 mL) was heated at 100 C for 7 h. After stirring overnight at room temperature, the mixture was diluted with EtOAc and washed twice with water, then with brine. The combined aqueous layers were extracted with EtOAc, and the combined organic phases were dried and concentrated to give crude diethyl 2-(3-chloropyridin-2-yl)malonate as a colorless oil, used without further purification. Mass spectrum m/z 272 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With caesium carbonate; In dimethyl sulfoxide; at 105℃; for 7h; | <strong>[1480-64-4]3-Chloro-2-fluoropyridine</strong> (5.00 g, 37.25 mmol, 1 eq.) and benzylamine (5.75 mL, 52.15 mmol, 1.4 eq.) were addedto cesium carbonate (18.21 g, 55.88 mmol, 1.5 eq.) in dimethyl sulfoxide (25 mL) and the reaction mixture wasstirred at 105 C for 7 h. After cooling to 25 C water (25 mL) was added dropwise using an ice bath to maintain thetemperature below 30C. The reaction mixture was transferred to a separation funnel. Then water (15 mL) andethyl acetate (40 mL) were added and the phases were separated. The aqueous phase was extracted with ethylacetate (2 x 50 mL). The combined organic phases were washed with water (4 x 50 mL) and brine (50 mL). Dryingover magnesium sulfate, removal of the solvent and purification by flash chromatography (2 to 3% ethyl acetate inheptanes) gave the N-benzyl-3-chloropyridin-2-amine as a white solid (6.56 g, 81%). Rf = 0.25 (5% ethyl acetate inheptanes).1H NMR (400 MHz, CDCl3): = 1H NMR (400 MHz, CDCl3): = 4.71 (d, J = 5.5 Hz, 2 H), 5.28 (br. s, 1 H), 6.57 (dd, J =7.8, 5.0 Hz, 1 H), 7.27 - 7.32 (m, 1 H), 7.33 - 7.42 (m, 4 H), 7.46 -7.51 (obs. m, 1 H), 8.07 (dd, J = 4.9, 1.6 Hz, 1 H).13C NMR (101 MHz, CDCl3): = 45.5, 113.1, 115.4, 127.3, 127.7, 128.6, 136.1, 139.3, 146.0, 153.9.LC/MS (m/z): [M + H]+ calculated for C12H12ClN2+, 219.1 ; found, 218.7 |
81% | With caesium carbonate; dimethyl sulfoxide; at 105℃; for 7h; | <strong>[1480-64-4]3-Chloro-2-fluoropyridine</strong> (5.00 g, 37.25 mmol, 1 eq.) and benzylamine (5.75 mL, 52.15 mmol, 1.4 eq.) were addedto cesium carbonate (18.21 g, 55.88 mmol, 1.5 eq.) in dimethyl sulfoxide (25 mL) and the reaction mixture wasstirred at 105 C for 7 h. After cooling to 25 C water (25 mL) was added dropwise using an ice bath to maintain thetemperature below 30C. The reaction mixture was transferred to a separation funnel. Then water (15 mL) andethyl acetate (40 mL) were added and the phases were separated. The aqueous phase was extracted with ethylacetate (2 x 50 mL). The combined organic phases were washed with water (4 x 50 mL) and brine (50 mL). Dryingover magnesium sulfate, removal of the solvent and purification by flash chromatography (2 to 3% ethyl acetate inheptanes) gave the N-benzyl-3-chloropyridin-2-amine as a white solid (6.56 g, 81%). Rf = 0.25 (5% ethyl acetate inheptanes).1H NMR (400 MHz, CDCl3): = 1H NMR (400 MHz, CDCl3): = 4.71 (d, J = 5.5 Hz, 2 H), 5.28 (br. s, 1 H), 6.57 (dd, J =7.8, 5.0 Hz, 1 H), 7.27 - 7.32 (m, 1 H), 7.33 - 7.42 (m, 4 H), 7.46 -7.51 (obs. m, 1 H), 8.07 (dd, J = 4.9, 1.6 Hz, 1 H).13C NMR (101 MHz, CDCl3): = 45.5, 113.1, 115.4, 127.3, 127.7, 128.6, 136.1, 139.3, 146.0, 153.9.LC/MS (m/z): [M + H]+ calculated for C12H12ClN2+, 219.1 ; found, 218.7 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; In N,N-dimethyl-formamide; at 40℃; for 5h; | General procedure: Ingenol-5,20-acetonide (0.13 mmol) dissolved in DMF (0.3 ml) was added a heteroaryl halide (0.65 mmol) and caesium carbonate (0.26 mmol). The mixture was stirred at 60 C. for 1 hour. After cooling to r.t. the mixture was partitioned between diethylether (2 ml) and saturated aq. sodium hydrogencarbonate (0.5 ml). The ether phase was isolated, dried over sodium sulphate and concentrated in vacuo. The residue was purified by flash chromatography (heptane?heptane/ethyl acetate 7:3), giving the title compound as a white solid. Compound 215 was prepared according to Procedure a, but using 1.2 eq. of caesium carbonate at 40 C. for 5h.Starting material: 3-Chioro-2-fluoro-pyridine. ?H NMR (300 MHz, CDC13) oe 7.99 (dd, 1H), 7.66(dd, 1H), 6.89 (dd, 1H), 6.10-6.09 (m, 1H), 5.84 (s, 1H),5.78-5.75 (m, 1H), 4.48 (s, 1H), 4.20-4.13 (m, 3H), 4.03-4.02(m, 1H), 2.78-2.73 (m, 1H), 2.31-2.22 (m, 1H), 1.87 (d, 3H),1.83-1.74 (m, 1H), 1.42 (s, 3H), 1.39 (s, 3H), 1.10 (s, 3H),1.04 (s, 3H), 1.03 (d, 3H), 0.96-0.89 (m, 1H), 0.75-0.67 (m,1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 160℃;Microwave irradiation; Inert atmosphere; | General procedure: To a solution of N-(3-chloro-4-fluorophenyl)piperidine-4-carboxamide (50 mg, 0.171 mmol) and2-halopyridine/pyrazine (0.171 mmol) in NMP (0.5 ml) was added DIPEA (0.077 ml, 0.443 mmol).The reaction mixture was heated for 10-50 minutes at 160C in a microwave oven.NMP (0.5 ml) and methanol (0.5ml) were added and the crude product was directly purified bypreparative HPLC (C18, acetonitrile/water gradient). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 180℃; for 1h;Microwave irradiation; Inert atmosphere; | To a solution of piperidine-4-carboxylic acid (1.77 g, 13.7 mmol) in NMP (5 ml) was added <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (1.50 g, 11.4 mmol), followed by diisopropyl ethylamine (6.00 ml, 34.3mmol). The mixture was heated in a microwave oven at 180C for 1 hour. The reaction mixturewas diluted with ethyl acetate and washed with water and brine. The organic phase was driedover sodium sulfate, filtered and concentrated to give 2.53 g (10.5 mmol, 92%) of 1-(3-chloropyridin-2-yl)piperidine-4-carboxylic acid, which was used for subsequent reactions withoutfurther purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | In a 20 mL vial was dissolved 3-hydroxy-2,2-dimethyl-/V-(l-methylpiperidin-4- yl)propanamide (0.138 g, 0.380 mmol) in DMF (1.5 mL) to give a colorless solution. Sodium hydride (60 wt %, 0.035 g, 0.87 mmol) was added. After stirring for 30 minutes at room temperature, <strong>[1480-64-4]3-chloro-2-fluoropyridine</strong> (0.050 g, 0.38 mmol) was added. The mixture was stirred at room temperature overnight. The reaction mixture was filtered through a hydrophilic PTFE 0.45 pm filter (Millipore Millex-LCR) which was rinsed with methanol. The filtrate was purified by preparative HPLC (Method A). The product-containing fractions were evaporated to give a TFA salt of the title compound as a clear film (69.0 mg, 41%). XH NMR(500 MHz, CDCI3) d ppm 1.28 (s, 6 H), 1.95 - 2.11 (m, 4 H), 2.83 (m, 5 H), 3.56 - 3.66 (m, 2 H), 3.98 - 4.11 (m, 1 H), 4.25 (s, 2 H), 6.31 - 6.37 (m, 1 H), 6.67 - 6.72 (m, 1 H), 7.50 - 7.58 (m, 1 H), 8.01 - 8.11 (m, 1 H); ESI-MS [M+H]+ calc?d for C16H24CIN3O2, 326.16; (1067) found, 326.19. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / isopropyl alcohol; water / 3 h / 65 °C / Inert atmosphere | ||
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale | ||
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / water; isopropyl alcohol / 3 h / 65 °C / Inert atmosphere |
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale | ||
Multi-step reaction with 3 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Large scale 2.1: ammonia / dimethyl sulfoxide / Heating; Large scale 3.1: citric acid; copper(l) iodide; 1,10-Phenanthroline / isopropyl alcohol; water / 26 h / 50 - 75 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / isopropyl alcohol; water / 3 h / 65 °C / Inert atmosphere 4.1: potassium carbonate / N,N-dimethyl acetamide; water / Schlenk technique | ||
Multi-step reaction with 4 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale 4.1: potassium carbonate / N,N-dimethyl acetamide; water / Schlenk technique | ||
Multi-step reaction with 4 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / water; isopropyl alcohol / 3 h / 65 °C / Inert atmosphere 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C |
Multi-step reaction with 4 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C | ||
Multi-step reaction with 4 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Large scale 2.1: ammonia / dimethyl sulfoxide / Heating; Large scale 3.1: citric acid; copper(l) iodide; 1,10-Phenanthroline / isopropyl alcohol; water / 26 h / 50 - 75 °C / Inert atmosphere 4.1: potassium carbonate / N,N-dimethyl acetamide; water / Schlenk technique; Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / water; isopropyl alcohol / 3 h / 65 °C / Inert atmosphere 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: water; ethanol / 25 - 75 °C | ||
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: water; ethanol / 25 - 75 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / water; isopropyl alcohol / 3 h / 65 °C / Inert atmosphere 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: tetrahydrofuran / 50 °C | ||
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: tetrahydrofuran / 50 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: 1,10-Phenanthroline; copper(l) iodide / water; isopropyl alcohol / 3 h / 65 °C / Inert atmosphere 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: ethanol / 50 °C | ||
Multi-step reaction with 5 steps 1.1: n-butyllithium / tetrahydrofuran / 1 h / -78 °C / Inert atmosphere; Large scale 1.2: 0.5 h / Inert atmosphere; Large scale 2.1: ammonia / dimethyl sulfoxide / 80 °C / Large scale 3.1: N-ethyl-N,N-diisopropylamine; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; tris-(dibenzylideneacetone)dipalladium(0) / 1,4-dioxane / 16 h / 65 °C / Inert atmosphere; Large scale 4.1: potassium carbonate / water; N,N-dimethyl acetamide / 90 °C 5.1: ethanol / 50 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 8 steps 1: caesium carbonate / dimethyl sulfoxide / 7 h / 100 °C 2: sodium chloride; water / dimethyl sulfoxide / 8 h / 145 °C 3: water; sodium hydroxide / tetrahydrofuran / 20 °C 4: N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate / N,N-dimethyl-formamide / 1.5 h / 20 °C 5: dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate / dimethyl sulfoxide; 1,4-dioxane / 7 h / 90 °C / Inert atmosphere 6: toluene / 5 h / 110 °C 7: Whelko RR / methanol; carbon dioxide / 35 °C / 75007.5 Torr / Resolution of racemate; liquid CO2 8: caesium carbonate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2 / tetrahydrofuran; water / 10 h / 62 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 8 steps 1: caesium carbonate / dimethyl sulfoxide / 7 h / 100 °C 2: sodium chloride; water / dimethyl sulfoxide / 8 h / 145 °C 3: water; sodium hydroxide / tetrahydrofuran / 20 °C 4: N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate / N,N-dimethyl-formamide / 1.5 h / 20 °C 5: dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate / dimethyl sulfoxide; 1,4-dioxane / 7 h / 90 °C / Inert atmosphere 6: toluene / 5 h / 110 °C 7: Whelko RR / methanol; carbon dioxide / 35 °C / 75007.5 Torr / Resolution of racemate; liquid CO2 8: caesium carbonate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2 / tetrahydrofuran; water / 45 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.6 g | With sodium hexamethyldisilazane In tetrahydrofuran; toluene at 0℃; for 2.16667h; | Step 2: tert-butyl 1-(3-chloropyridin-2-yl)-3,3-difluorocyclobutane-1-carboxylate 3-Chloro-2-fluoropyridine (1.2 g, 10.4 mmol, 1.0 equiv.) and tert-butyl 3,3- difluorocyclobutane-1-carboxylate (2.0 g, 10.4 mmol, 1.0 equiv.) were dissolved in toluene (60 mL). This was followed by the addition of NaHMDS (2 M in THF, 6.2 ml, 12.4 mmol, 1.2 equiv.) dropwise with stirring at 0 °C in 10 min. The resulting solution was stirred for 2 hours at 0 °C and then quenched by the addition of saturated aqueous NH4Cl. The resulting solution was extracted with ethyl acetate, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash column chromatography on silica gel, eluting with ethyl acetate/petroleum ether (1:5) to give tert-butyl 1-(3- chloropyridin-2-yl)-3,3-difluorocyclobutane-1-carboxylate (1.6 g) as colorless oil. LCMS Method D: [M+H]+ = 304. |
1.6 g | With sodium hexamethyldisilazane In tetrahydrofuran; toluene at 0℃; for 2.16667h; | 2 Step 2: tert- butyl 1-(3-chloropyridin-2-yl)-3,3-difluorocyclobutane-1-carboxylate 3-Chloro-2-fluoropyridine (1.2 g, 10.4 mmol, 1.0 equiv.) and tert-butyl 3,3-difluorocyclobutane-1 -carboxylate (2.0 g, 10.4 mmol, 1.0 equiv.) were dissolved in toluene (60 mL). This was followed by the addition of NaHMDS (2 M in THF, 6.2 ml, 12.4 mmol, 1.2 equiv.) dropwise with stirring at 0 °C in 10 min. The resulting solution was stirred for 2 hours at 0 °C and then quenched by the addition of saturated aqueous NH4CI. The resulting solution was extracted with ethyl acetate, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash column chromatography on silica gel, eluting with ethyl acetate/petroleum ether (1:5) to give tert-butyl 1-(3-chloropyridin-2-yl)-3,3-difluorocyclobutane-1-carboxylate (1.6 g) as colorless oil. LCMS Method BD: [M+H]+ = 304. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
320 mg | With N-ethyl-N,N-diisopropylamine In 1-methyl-pyrrolidin-2-one at 120℃; for 16h; | 1 Synthesis of 6-d A mixture of 3-chloro-2-fluoropyridine (750 mg, 5.70 mmol), 3-methylpiperidine-4- carboxylic acid hydrochloride (1.27 g, 5.70 mmol) and DIEA (2.21 g, 17.1 mmol) inNMP (10 mL) was stirred at 120 °C for 16 hours. The reaction mixture was cooled to room temperature and brine (10 mL) was added. IN HC1 was added to adjust the pH to 7 and the mixture was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (30 mL x 3), dried over anhydrous Na2SC>4 and concentrated under reduced pressure to give a product which was purified by flash chromatography on silica gel (CH3OH/CH2CI2 = 0/1 to 1/20) to give l-(3-chloropyridin-2-yl)-3-methylpiperidine-4-carboxylic acid (320 mg, 1.25 mmol) as an oil. m/z: [M+H]+ Calcd for C11H13CIN2O2255.1; Found 254.9. NMR (400 MHz, CDCb) d = 8.17 (dd, J=1.7, 4.8 Hz, 1H), 7.57 (dd, J=1.6, 7.7 Hz, 1H), 6.82 (dd, J=4.8, 7.8 Hz, 1H), 3.90 - 3.60 (m, 2H), 3.11 - 2.87 (m, 2H), 2.80 - 2.63 (m, 1H), 2.56 - 2.43 (m, 1H), 2.21 - 2.09 (m, 1H), 1.86 (qd, J=3.8, 13.6 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83.3% | With potassium carbonate In dimethyl sulfoxide at 20℃; for 2h; | 1 Synthesis of 7-c To a solution of 3-chloro-2-fluoropyridine (1.5 g, 11.4 mmol) and K2CO3 (3.15 g, 22.8 mmol) in DMSO (1 mL) was added piperidine-4-carbonitrile hydrochloride (1.83 g, 12.5 mmol). The mixture was stirred at 20 °C under air for 2 hours. The mixture was poured into water (30 mL) and extracted with EtOAc (50 mL x 2). The combined organic layers were washed with brine (100 mL x 2), dried over Na2S04 and concentrated in vacuo to give the crude product which was purified by flash chromatography on silica gel (EtOAc/Petroleum ether = 0/1 to 15/85) to give l-(3-chloropyridin-2-yl)piperidine-4-carbonitrile (2.10 g, 9.47 mmol, 83.3 %) as a solid m/z: [M + H]+ Calcd for C11H12C1N3 222.1; Found 221.9. NMR (400 MHz, CDCh) d = 8.11 (dd, J= 1.4, 4.8 Hz, 1H), 7.53 (dd, J= 1.5, 7.8 Hz, 1H), 6.80 (dd, J= 4.8, 7.8 Hz, 1H), 3.52 (ddd, J= 3.7, 6.3, 12.9 Hz, 2H), 3.10 - 3.10 (m, 1H), 3.19 - 3.00 (m, 2H), 2.75 (tt, J= 4.3, 8.4 Hz, 1H), 2.09 - 1.91 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50.8% | With potassium tert-butylate; In dimethyl sulfoxide; at 0 - 20℃;Inert atmosphere; | To a mixture of (5R)-5-(hydroxymethyl)pyrrolidin-2-one (6.0 g, 52.11 mmol, 1.0 equiv) and t-BuOK (17.5 g, 156.34 mmol, 3.0 equiv) in DMSO (15 ml) was added 3-chloro-2-fluoropyridine (8.2 g, 62.54 mmol, 1.2 equiv) at 0 C .The resulting mixture was stirred for 1 h at room temperature under nitrogen atmosphere.The residue was purified by reverse flash chromatography with the following conditions: column, silica gel; mobile phase, MeCN in water, 50% to 70% gradient in 20 min; detector, UV 254 nm.This resulted in ((R)-5-(((3-chloropyridin-2- yl)oxy)methyl)pyrrolidin-2-one (6 g, 50.80%) as a yellow solid. LCMS (ESI) [M+H]+: 227.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19% | With potassium carbonate In N,N-dimethyl-formamide at 20 - 130℃; for 3h; | 41.6 Step 6: Synthesis of ethyl 6-chloro-7-((2R,4S)-2-(((3-chloropyridin-2-yl)oxy)methyl)-4- fluoropyrrolidin-1-yl)-4-oxo-1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate o a stirred solution of ethyl 6-chloro-7-[(2R,4S)-4-fluoro-2-(hydroxymethyl)pyrrolidin-1-yl]-4-oxo- 1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate (500 mg, 995 μmol) in DMSO (10 mL) were added 3-chloro-2-fluoropyridine (653 mg, 4.97 mmol) and potassium carbonate (686 mg, 4.97 mmol) at room temperature. The reaction mixture was stirred at 130 °C for 3 h. After completion of reaction, reaction mixture was quenched with water and extracted with EtOAc (3X 20 mL). The combined organic layer was washed with cold water, brine solution, dried over anhydrous Na2SO4 filtered and concentrated to get crude compound. The obtained crude compound was purified by column chromatography to afford ethyl 6-chloro-7-[(2R,4S)-2-[(3-chloropyridin-2-yl)oxy]methyl}-4- fluoropyrrolidin-1-yl]-4-oxo-1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate (105 mg, 188 μmol, 19%) as pale yellow gummy material. TLC System: 100% EtOAc, Rf: 0.5 MS (ESI) calcd for C26H22Cl2FN5O4: 557.10; found: 558.1 [M+H]+ (rt: 3.21 min). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39.53% | With sodium hydride In tetrahydrofuran at 20℃; Inert atmosphere; | 44.5 Step 5: Synthesis of rac-tert-butyl (2R,3S)-2-(((3-chloropyridin-2-yl)oxy)methyl)-3- methylpyrrolidine-1-carboxylate A mixture of rac-tert-butyl (2R,3S)-2-(hydroxymethyl)-3-methylpyrrolidine-1- carboxylate (1.00 g, 4.645 mmol, 1.00 equiv) and 3-chloro-2- fluoropyridine (1221.87 g, 9.290 mmol, 2 equiv) and NaH (334.40 mg, 13.934 mmol, 3 equiv) in THF (30.00 mL, 370.290 mmol, 79.72 equiv) was stirred for overnight at room temperature under nitrogen atmosphere. The reaction was then quenched by the addition of 30 mL of MeOH. The resulting mixture was concentrated under reduced pressure. The residue was purified by reverse fl ash chromatography with the following conditions: column, C18 silica gel; mobile phase, MeOH in w ater, 10% to 80% gradient in 20 min; detector, UV 254 nm, afford rac-tert-butyl (2R,3S)-2-(((3- chloropyridin-2-yl)oxy)methyl)-3-methylpyrrolidine-1-carboxylate (600 mg, 39.53%) as yellow oil |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32% | With potassium <i>tert</i>-butylate In tetrahydrofuran at 20℃; for 1h; | 47.2 Step 2: Synthesis of 3-(((3-chloropyridin-2-yl)oxy)methyl)isothiazolidine 1,1-dioxide To a stirred mixture of 3-(hydroxymethyl)isothiazolidine 1,1-dioxide (510 mg, 3.38 mmol) and 3- chloro-2-fluoropyridine (663 mg, 5.07 mmol) in DMSO (10 mL) was added t-BuOK (1.14 g, 10.14 mmol). The mixture was stirred at room temperature for 1 h. The mixture was purified by reverse phase flash column with 20- 80% acetonitrile in water to afford 3-(((3-chloropyridin-2- yl)oxy)methyl)isothiazolidine 1,1-dioxide (280 mg, 32%) as light yellow solid. LCMS (ESI) [M+H]+: 263. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25.3% | Stage #1: tert-butyl 1-(hydroxymethyl)-2-azabicyclo[3.1.0]hexane-2-carboxylate With sodium hydride In tetrahydrofuran at 20℃; for 0.5h; Stage #2: 3-chloro-2-fluoropyridine In tetrahydrofuran at 20℃; for 1h; | 48.4 Step 4: Synthesis of Tert-butyl 1-[[(3-chloropyridin-2-yl)oxy]methyl]-2-azabicyclo[3.1.0]hexane- 2-carboxylate To a solution of placed tert-butyl 1-(hydroxymethyl)-2-azabicyclo[3.1.0]hexane-2-carboxylate (260 mg, 1.22 mmol, 1.0 equiv) in THF (2 mL) was added NaH (87.76 mg, 3.657 mmol, 3.00 equiv). The resulting mixture was stirred at room tempearture for 0.5h. Then, 3-chloro-2-fluoropyridine (240.52 mg, 1.829 mmol, 1.50 equiv) was added into the solution and stirred at room temperature for 1h. The reaction was quenched by water. The resulting solution was concentrated under vacuum. The crude product was purified by reverse phase with Water (10 mmol/L NH4HCO3)/acetonitrile = 80% - 90 in 5 min; 220 nm. This resulted in tert-butyl 1-[[(3-chloropyridin-2-yl)oxy]methyl]-2- azabicyclo[3.1.0]hexane-2-carboxylate (100 mg, 25.3%) as a yellow oil. LCMS (ESI) [M+H]+: 326 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41.63% | With sodium hydride In tetrahydrofuran at 0 - 20℃; for 1h; Inert atmosphere; | 57.6 Step 6: Synthesis of Tert-butyl 7-(((3-chloropyridin-2-yl)oxy)methyl)-6-azaspiro[3.4]octane-6- carboxylate T To a mixture of tert-butyl 7-(hydroxymethyl)-6-azaspiro[3.4]octane-6-carboxylate (230 mg, 0.95 mmol, 1.0 equiv) in THF (5 ml) was added NaH (69 mg, 2.86 mmol, 3.0 equiv) and 3-chloro-2- fluoropyridine (150 mg, 1.14 mmol, 1.2 equiv) at 0 °C under nitrogen atmosphere.The resulting mixture was stirred for 1 h at room temperature under nitrogen atmosphere.The reaction was quenched with MeOH at 0 °C.The residue was purified by reverse flash chromatography with the following conditions: column, silica gel; mobile phase, MeCN in water, 50% to 60% gradient in 10 min; detector, UV 254 nm.This resulted in tert-butyl 7-[(3-chloropyridin-2-yl)oxy]methyl}-6- azaspiro[3.4]octane-6-carboxylate (140 mg, 41.63%) as a light yellow oil. LCMS (ESI) [M+H]+: 35 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
67.63% | With sodium hydride In tetrahydrofuran at 0℃; for 1h; Inert atmosphere; | 60.3 Step 3: Synthesis of tert-butyl (2R)-2-(((3-chloro-1,2-dihydropyridin-2-yl)oxy)methyl)-4,4- difluoropyrrolidine-1-carboxylat To a stirred solution of tert-butyl (2R)-4,4-difluoro-2-(hydroxymethyl)pyrrolidine-1-carboxylate (2.3 g, 9.6 mmol, 1 equiv) and NaH (465 mg, 19.3 mmol, 2 equiv) in THF was added 3-chloro-2- fluoropyridine (1.5 g, 11.6 mmol, 1.2 equiv) dropwise in portions at 0 degrees C under nitrogen atmosphere 1 h. The reaction was quenched with Water at 0 degrees C. The aqueous layer was extracted with EtOAc (3x10 mL).The residue was purified by silica gel column chromatography, eluted with PE / EA (3:1) to afford tert-butyl (2R)-2-[[(3-chloro-1,2-dihydropyridin-2-yl)oxy]methyl]- 4,4-difluoropyrrolidine-1-carboxylate (2.3 g, 67.63%) as a yellow solid. LCMS (ESI) [M+H]+: 351. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | Stage #1: tert-butyl (2R)-2-(hydroxymethyl)-4-(pyridin-3-yl)pyrrolidine-1-carboxylate With sodium hydride In N,N-dimethyl-formamide at 0 - 20℃; for 0.5h; Inert atmosphere; Stage #2: 3-chloro-2-fluoropyridine In N,N-dimethyl-formamide at 20℃; for 1.5h; Inert atmosphere; | 61.5 Step 5: Synthesis of Tert-butyl (2R)-2-[[(3-chloropyridin-2-yl)oxy]methyl]-4-(pyridin-3- yl)pyrrolidine-1-carboxylate To a mixture of tert-butyl (2R)-2-(hydroxymethyl)-4-(pyridin-3-yl)pyrrolidine-1-carboxylate (1.0 g, 3.59 mmol, 1.0 equiv) in DMF (12 mL) was added NaH (0.3 g, 10.78 mmol, 3.0 equiv) at 0 °C. The resulting mixture was stirred for 30 min at room temperature under nitrogen atmosphere. To the above mixture was added 3-chloro-2-fluoropyridine (0.7 g, 5.39 mmol, 1.5 equiv). The resulting mixture was stirred for additional 1.5 h at room temperature. The reaction was quenched by the addition of water (10 mL) at 0 °C. The resulting mixture was extracted with EtOAc (3 x 10 mL). The combined organic layers were dried over anhydrous Na2SO4. The resulting mixture was concentrated under vacuum. The residue was purified by silica gel column chromatography, eluted with PE/EtOAc (5:1). This resulted in tert-butyl (2R)-2-[[(3-chloropyridin-2-yl)oxy]methyl]-4-(pyridin-3-yl)pyrrolidine-1- carboxylate (700 mg, 50 %) as a light yellow oil. LCMS (ESI) [M+H]+: 390.2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52.1% | With potassium hexamethylsilazane In tetrahydrofuran at 0℃; for 1h; | 63.5 Step 5: Synthesis of tert-butyl (2R)-2-(((3-chloropyridin-2-yl)oxy)methyl)-4- cyclobutylpyrrolidine-1-carboxylate o a solution of tert-butyl (2R)-4-cyclobutyl-2-(hydroxymethyl)pyrrolidine-1-carboxylate (350 mg, 1.37 mmol, 1.0 equiv) in THF (5 mL) was added 3-chloro-2-fluoropyridine (215.3 mg, 1.64 mmol, 1.2 equiv) and Potassium bis(trimethylsilyl)amide (3 mL, 2.74 mmol, 2.0 equiv). The resulting solution was stirred for 1 hr at 0 °C. The reaction was quenched with water. The resulting mixture was extracted with EtOAc(3*20 mL) The combined organic layers was collected and dried with anhydrous Na2SO4.The resulting mixture was concentrated under vacuum. The residue was purified by silica gel column chromatography, eluted with PE/EtOAc (1:1).This resulted in tert-butyl (2R)-2-(((3- chloropyridin-2-yl)oxy)methyl)-4-cyclobutylpyrrolidine-1-carboxylate (260.5 mg, 52.1%) of as a yellow solid. LCMS (ESI) [M+H]+: 367.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
26% | With potassium carbonate In dimethyl sulfoxide at 130℃; for 3h; | 77.5 Step 5: Synthesis of ethyl 6-chloro-7-[(2S,4S)-2-[(3-chloropyridin-2-yl)oxy]methyl}-4- fluoropyrrolidin-1-yl]-4-oxo-1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate To a stirred solution of ethyl 6-chloro-7-[(2S,4S)-4-fluoro-2-(hydroxymethyl)pyrrolidin-1-yl]-4-oxo- 1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate (200 mg, 362 μmol) in DMSO (5 mL ) was added potassium carbonate (248 mg, 1.80 mmol) followed by 3-chloro-2-fluoropyridine (157 μL, 1.80 mmol) at room temperature. The reaction was then heated to 130 °C and stirred for 3 h. After completion of reaction, the reaction mixture was quenched with ice-cold water (10 mL) and extracted with EtOAc (2 x 50 mL). The combined organic layer was washed with brine solution (10 mL), dried over anhydrous sodium sulfate, concentrated under reduced pressure to afford the crude compound. The crude compound was purified by silica gel column chromatography using 2% MeOH in DCM as eluent to get ethyl 6-chloro-7-[(2S,4S)-2-[(3-chloropyridin-2-yl)oxy]methyl}-4-fluoropyrrolidin-1- yl]-4-oxo-1-(pyrazin-2-yl)-1,4-dihydroquinoline-3-carboxylate (36.0 mg, 64.4 μmol, 26%) as yellow solid. MS (ESI): m/z 558.2 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29.6% | Stage #1: tert-butyl (2R)-2-(1-hydroxyethyl)pyrrolidine-1-carboxylate With sodium hydride In tetrahydrofuran at 0 - 20℃; for 0.5h; Inert atmosphere; Stage #2: 3-chloro-2-fluoropyridine In tetrahydrofuran at 70℃; for 2.5h; Inert atmosphere; | 8.4 Step 4. Synthesis of tert-butyl (2R)-2-[1-[(3-chloropyridin-2-yl) oxy] ethyl] pyrrolidine-1- carboxylate To a mixture of tert-butyl (2R)-2-(1-hydroxyethyl)pyrrolidine-1-carboxylate (500 mg, 2.32 mmol, 1.0 equiv) in THF (6 mL) was added NaH (167 mg, 6.97 mmol, 3.0 equiv) at 0 °C under nitrogen atmosphere. The resulting mixture was stirred for 30 min at room temperature under nitrogen atmosphere. To the above mixture was added 3-chloro-2-fluoropyridine (367 mg, 2.79 mmol, 1.2 equiv). The resulting mixture was stirred for additional 2.5 h at 70 °C. The mixture was allowed to cool down to room temperature. The reaction was quenched by the addition of water (6 mL) at 0 °C. The resulting mixture was concentrated under vacuum. The residue was purified by reverse phase flash chromatography with the following conditions: column, C18 silica gel; mobile phase, MeCN in water, 5% to 100% gradient in 30 min; detector, UV 254 nm UV 220 nm. This resulted in tert-butyl (2R)-2-[1-[(3-chloropyridin-2-yl) oxy] ethyl] pyrrolidine-1-carboxylate (126 mg, 29.6%) as a light yellow oil. LCMS (ESI) [M+H]+: 327. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With potassium hexamethylsilazane In tetrahydrofuran; toluene at 0 - 20℃; for 0.5h; | 1.54.1 Step 1 Into a 50-mL 3-nec , p oro-2-fluoropyridine (1.20 g, 9.12 mmol, 1.00 eq.), oxetane-3-carbonitrile (839 mg, 10.10 mmol, 1.10 eq.) in toluene (20.00 mL), followed by the addition of KHMDS (1M in THF) (11.00 mL, 10.94 mmol, 1.2 eq.) at 0 oC. After addition, the resulting solution was stirred for 30 min at room temperature. The reaction was then quenched by the addition of NH4Cl (aq) (30.00 mL), and extracted with ethyl acetate (50.00 mL X 2). The combined organic phase was dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by silica gel column eluting with ethyl acetate/petroleum ether (1/3) to afford 3-(3-chloropyridin-2-yl)oxetane-3-carbonitrile as a yellow solid (1.38 g, 78%). LCMS (ES) [M+1]+ m/z: 195. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31 mg | Stage #1: 1-azabicyclo<1.1.0>butane; phenylmagnesium chloride at -78 - 25℃; for 5h; Inert atmosphere; Stage #2: 3-chloro-2-fluoropyridine With triethylamine In toluene for 16h; Inert atmosphere; |
Tags: 1480-64-4 synthesis path| 1480-64-4 SDS| 1480-64-4 COA| 1480-64-4 purity| 1480-64-4 application| 1480-64-4 NMR| 1480-64-4 COA| 1480-64-4 structure
[ 1031929-23-3 ]
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3-Chloro-2-fluoro-5-methylpyridine
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