Structure of H-HomoPro-OMe.HCl
CAS No.: 18650-39-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 18650-39-0 |
| Formula : | C7H14ClNO2 |
| M.W : | 179.64 |
| SMILES Code : | O=C([C@H]1NCCCC1)OC.[H]Cl |
| MDL No. : | MFCD00672366 |
| InChI Key : | APCHKWZTSCBBJX-RGMNGODLSA-N |
| Pubchem ID : | 13246232 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H302-H315-H319-H335 |
| Precautionary Statements: | P261-P305+P351+P338 |
| Num. heavy atoms | 11 |
| Num. arom. heavy atoms | 0 |
| Fraction Csp3 | 0.86 |
| Num. rotatable bonds | 2 |
| Num. H-bond acceptors | 3.0 |
| Num. H-bond donors | 1.0 |
| Molar Refractivity | 48.62 |
| TPSA ? Topological Polar Surface Area: Calculated from |
38.33 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.1 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.72 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.69 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.9 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.68 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-1.51 |
| Solubility | 5.49 mg/ml ; 0.0306 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-1.5 |
| Solubility | 5.71 mg/ml ; 0.0318 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.14 |
| Solubility | 13.0 mg/ml ; 0.0723 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.61 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.98 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

[ 18650-39-0 ]

[ 123492-32-0 ]| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 92% | With thionyl chloride; at 0 - 20℃; | (S)-Piperidme-2-carboxylic acid (10.00 g, 77.46 mmol) in methanol (200ml) at 0°Cwas added thionyl chloride (15.0 ml, 205.61 mmol) under Ar. The mixture was stirred at 0°C for 30 min, then RT overnight, evaporated and crystallized with EtOH to afford the title product (9.90 g, 92percent yield). EIMS m/z 144.1 ( | M ]++I I ). |
| 79.1% | With thionyl chloride; at 0 - 70℃; for 4h; | To a solution of (i)-piperidine-2-carboxylic acid ( 10.0 g. 77.4 mmol) in MeOH (50 mL) was added thionyl chloride (8.5 mL, 1 17.2 mmol) dropwise at 0 °C. The mixture was stirred at 0 °C for 1 hr and at 70 °C for another 3 hrs. After the reaction was completed, the mixture was concentrated in vacuo to give the title compound as a white solid (11.0 g, 79.1percent). The compound was characterized by the following spectroscopic data: MS (ESI, pos.ion) m/z: 144.1 [M+H] +; NMR (400 MHz, CDC13) delta (ppm): 5.02 (br, 1 H), 4.00 (br, 1 H), 3.85 (s, 3H), 3.63 (br, 1 H), 3.15 (br, 1 H), 2.28 (m, 1 H), 2.08 (m, 2H), 1.86 (m. 2H), 1.63 (br, 1H). |
| 79.1% | With thionyl chloride; at 0 - 70℃; for 4h; | To a solution of L(-)-pipecolinic acid (10.0 g.77.4 mmol) in MeOH (50 mL) was added thionyl chloride (8.5 mL 117.2 mmol) dropwise at 0 °C. At the end of the addition, the mixture was stirred at 0 °C for 1.0 hr and then at 70 °C for another 3.0 hrs. After the reaction was completed, the mixture was concentrated in vacuo to give the title compound as a white solid (11.0 g.79.1percent). The compound was characterized by the following spectroscopic data:MS (LSI. pos.ion) w r: 144.1 [M+H] : and NMR (400 MHz. CDCl;,)i)(ppm): 5.02 (br. lH).4.00(br.1 H).3.85 (s.3H).3.63 (br. lH).3.15(br. lH). 2.28 (m.1H).2.08 (m.2H).1.86 (m.2H).1.63 (br.1H). |
| With thionyl chloride; at 0 - 70℃; for 4h; | 11655] To a solution of (s)-piperidine-2-carboxylic acid (10.0 g, 77.4 mmol) in MeOH (50 mE) was added thionyl chloride (8.5 mE, 117.2 mmol) dropwise at 0° C. The mixture was stirred at 0° C. for 1 hr and at 70° C. for another 3 hrs. Afier the reaction was completed, the mixture was concentrated in vacuo to give the title compound as a white solid (11.0 g, 79.1percent). The compound was characterized by the following spectroscopic data:11656] MS (ESI, pos.ion) mlz: 144.1 [M+H]11657] ?H NMR (400 MHz, CDC13) oe (ppm): 5.02 (br, 1H),4.00 (br, 1H), 3.85 (s, 3H), 3.63 (br, 1H), 3.15 (br, 1H), 2.28 (m, 1H), 2.08 (m, 2H), 1.86 (m, 2H), 1.63 (br, 1H). |

[ 18650-39-0 ]

[ 197249-99-3 ]
[ 18650-39-0 ]
[ 18650-39-0 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | With sodium tris(acetoxy)borohydride; triethylamine; In 1,2-dichloro-ethane; at 20℃; | [()-L-PYRIDIN-2-YLMETHYL-PIPERIDINE-2-CARBOXYLIC] acid methyl ester (2.25 g, 100percent) was obtained as described in Example 14 from [(59-METHYL] pipecolinate hydrochloride (1.68 g, 9.37 mmol) reacted with pyridine-2-carbaldehyde (1.0 g, 9.37 mmol) and sodium triacetoxyborohydride (2. 78 g, 13.1 mmol) in triethylamine (946 mg, 9.37 mmol) in dichloroethane (20 mL) at room [TEMPERATURE. LH NMR (CDC13), 6] (ppm): 8.53 (d, 1H), 7.65 (td, 1H), 7.49 (d, 1H), 7.14 (t, 1H), 3. 89 (d, 1H), 3.73 (s, 3H), 3.68 (d, 1H), 3.25 (dd, 1H), 2.97 (m, 1H), 2.25 (m, 1H), 1. 85 (m, 2H), 1.30-1. 76 (m, 4H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With thionyl chloride; In methanol; | PREPARATION 24 Thionyl chloride (0.58 ml) was added dropwise to a solution of L-pipecolinic acid (450 mg) in methanol at room temperature. The reaction mixture was stirred at 55° C. for 2 hours. The whole mixture was evaporated under reduced pressure to give (2S)-piperidine-2-carboxylic acid methyl ester hydrochloride as a colorless oil. NMR (DMSO-d6, delta): 1.55-1.75 (4H, m), 2.04-2.10 (1H, m), 2.49-2.51 (1H, m), 2.91 (1H, m), 3.20-3.27 (1H, m), 3.77 (3H, s), 4.08 (1H, m), 9.20-9.50 (2H, m) MASS (APCI): 144 (M+H)+(free) |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With sodium tris(acetoxy)borohydride; benzaldehyde; N-ethyl-N,N-diisopropylamine; In dichloromethane; | PREPARATION 25 (2S)-Piperidine-2-carboxylic acid methyl ester hydrochloride (625 mg) was dissolved in dichloromethane. Then N,N-diisopropylethylamine (0.91 ml) and benzaldehyde (0.53 ml) were added to the solution at 0° C. After the whole was stirred for 30 minutes at the same temperature, sodium triacetoxyborohydride (1.48 g) was added. The reaction mixture was allowed to room temperature and stirred for 3 hours. The mixture was poured into aqueous saturated sodium hydrogen carbonate solution and extracted with ethyl acetate. The extract was dried over magnesium sulfate and evaporated under reduced pressure to give (2S)-1-benzylpiperidine-2-carboxylic acid methyl ester (795 mg). NMR (DMSO-d6, delta): 1.26-1.86 (6H, m), 2.04-2.20 (1H, m), 2.88-2.99 (1H, m), 3.16 (1H, dd, J=4.9, 7.3 Hz), 3.40 (1H, d, J=13.3 Hz), 3.74 (3H, s), 3.78 (1H, d, J=13.3 Hz), 7.22-7.38 (5H, m) MASS (APCI): 234 (M+H)+ |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | In dichloromethane (DCM); hexane; ethyl acetate; | Method A (S)-Piperidine-1,2-dicarboxylic acid 1-benzyl ester 2-methyl ester To a stirred suspension of <strong>[18650-39-0](S)-piperidine-2-carboxylic acid methyl ester hydrochloride</strong> salt (5.0 g, 27.8 mmol) in dichloromethane (DCM) (35 mL) at 0° C. was added diisopropylethylamine (DIPEA) (10.1 mL, 58.4 mmol) followed by N-(benzyloxycarbonyloxy) succinimide (7.63 g, 30.6 mmol). The reaction mixture was allowed to warm to room temperature and stirred overnight. The residue was diluted with DCM and washed with 1.0-M HCl. The organic layer was washed with brine, dried(Na2SO4), filtered and concentrated in vacuo. The residue was purified by flash chromatography (20percent ethyl acetate in hexane) to afford the title compound as a pale yellow oil (7.72, 100percent): 1H NMR (400 MHz, CD3OD) delta 1.19-1.88 (5 H, m), 2.15-2.28 (1H, m), 2.91-3.12 (1H, m), 3.70-3.73 (3H, 2s), 4.00-4.07 (1H, m), 4.82-4.87 (1H, m), 5.03-5.21 (2H, m), 7.24-7.39 (5H, m); 13C NMR (100 MHz, CD3OD) delta 22.0, 22.1 (CH2), 26.0, 26.1 (CH2), 28.1 (CH2), 43.4, 43.5 (CH2), 53.1 (CH3), 56.2, 56.5 (CH), 68.8, 68.9 (CH2), 129.2 (CH), 129.5 (CH), 129.9 (CH), 138.4 (C), 167.0 (CO), 173.7 (CO). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| Preparation 1 (2S)-2-(Methoxycarbonyl)piperidinium chloride [(2S)-Piperidinecarboxylic acid L-tartrate (20.0 g) [see WO-A-96/11185] was added dropwise to a solution of thionyl chloride (54 ml) in methanol (270 ml) at 0° C. The reaction mixture was then stirred for 18 hours at room temperature, after which time the solvent was removed under reduced pressure and the residue was azeotroped with toluene (3*100 ml). The crude product was purified by recrystallisation from methanol (15 ml) with addition of diethyl ether to turbidity, affording (2S)-2-(methoxycarbonyl)piperidinium chloride (11.06 g) as white crystals. 1H-NMR (D2O) delta: 3.95 (1H, d), 3.70 (3H, m), 3.40 (1H, d), 3.00 (1H, t), 2.20 (1H, d), 1.80 (2H, m), 1.70-1.40 (3H, m). | ||
| Preparation 1 (2S)-2-(Methoxycarbonyl)piperidinium chloride STR46 [(2S)-Piperidinecarboxylic acid L-tartrate (20.0 g) [se International Patent Application publication number WO-A-96/11185] was added dropwise to a solution of thionyl chloride (54 ml) in methanol (270 ml) at 0° C. The reaction mixture was then stirred for 18 hours at room temperature, after which time the solvent was removed under reduced pressure and the residue was azeotroped with toluene (3*100 ml). The crude product was purified by recrystallisation from methanol (15 ml) with addition of diethyl ether to turbidity, affording (2S)-2-(methoxycarbonyl)piperidinium chloride (11.06 g) as white crystals. 1 H-NMR (D2 O)delta:3.95 (1H, d), 3.70 (3H, m), 3.40 (1H, d), 3.00 (1H, t), 2.20 (1H, d), 1.80 (2H, m), 1.70-1.40 (3H, m). Rotation:[alpha]D =-8.40° (c=0.1 methanol). MS:144 (MH+). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With N-ethyl-N,N-diisopropylamine; In acetonitrile; | Preparation 2 Methyl (2S)-1-(1,3-benzoxazol-2-yl)-2-piperidinecarboxylate Ethyldiisopropylamine (6.52 ml) was added to a solution of (2S)-2-(methoxycarbonyl)piperidinium chloride (3.057 g) [see Preparation 1] and 2-chlorobenzoxazole (2.13 ml) in acetonitrile (50 ml). The reaction mixture was stirred at room temperature for 18 hours and then at 50° C. for a further 2 hours. The solvent was removed under reduced pressure and the residue partitioned between ethyl acetate and water, the organic layer was separated, dried over magnesium sulphate and the solvent removed under reduced pressure. The crude product was purified by column chromatography on silica gel eluding with a solvent gradient of 80:10:0, changing to 0:100:0, followed by 0:95:5, by volume, hexane:ethyl acetate:methanol, to afford methyl (2S)-1-(1,3-benzoxazol-2-yl)-2-piperidinecarboxylate (3.18 g) as a solid. 1H-NMR (CDCl3) delta: 7.35 (1H, d), 7.25 (1H, d), 7.15 (1H, m), 7.00 (1H, m), 5.00 (1H, d), 4.20 (1H, m), 3.70 (3H, s), 3.35 (1H, t), 2.30 (1H, d), 1.80 (3H, m), 1.60 (1H, m), 1.35 (1H, m). MS: 261 (MH+). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| PREPARATION 24 (2S)-2-(Methoxycarbonyl)piperidine Hydrochloride Thionyl chloride (161 ml) was added dropwise to a suspension of (2S)-2-piperidinecarboxylic acid L-tartrate (60 g) [see Preparation 1] in methanol (800 ml) at 0° C. The reaction mixture was stirred for 18 hours at room temperature after which time the solvent was removed under reduced pressure and the product azeotroped with toluene, precipitated out using methanol and filtered to afford (2S)-2-(methoxycarbonyl)piperidine hydrochloride (37.7 g) as a white solid. 1H-NMR (D2O) delta: 3.95 (1H, d), 3.70 (3H, s), 3.40 (1H, d), 3.00 (1H, t), 2.20 (1H, d), 1.80 (2H, d), 1.70-1.40 (3H, m). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With triethylamine; In dichloromethane; | PREPARATION 25 Methyl (2S)-1-[(Cyclohexylmethyl)sulfonyl]-2-piperidinecarboxylate Triethylamine (22.15 ml) was added to a solution of (2S)-2-(methoxycarbonyl)piperidine hydrochloride (10 g) [see Preparation 24] and cyclohexylmethanesulfonyl chloride (16.42 g) [King. J. F. et al,. J. Am. Chem. Soc., 1992, 114(5), 1743-9] in dichloromethane (100 ml). The reaction mixture was stirred for 18 hours after which time the solvent was removed under reduced pressure and the residue diluted with ethyl acetate. The organic layer was washed with water, brine, dried over magnesium sulphate and the solvent was removed under reduced pressure. The crude product was purified by column chromatography on silica gel eluding with a solvent gradient of 95:5 changing to 80:20, by volume, hexane:ethyl acetate to afford methyl (2S)-1-[(cyclohexylmethyl)sulfonyl]-2-piperidinecarboxylate (11.9 g) as a white solid. 1H-NMR (CDCl3) delta: 4.70 (1H, d), 3.75 (3H, s), 3.70 (1H, d), 3.20 (1H, t), 2.80 (2H, d), 2.20 (1H, d), 2.00-1.00 (16H, m). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In acetonitrile; | Preparation 2/Example 32 Methyl (2S)-1-(1,3-benzoxazol-2-yl)-2-piperidinecarboxylate STR47 N-Ethyldiisopropylamine (6.52 ml) was added to a solution of (2S)-2-(methoxycarbonyl)piperidinium chloride (3.057 g) [see Preparation 1] and 2-chlorobenzoxazole (2.13 ml) in acetonitrile (50 ml). The reaction mixture was stirred at room temperature for 18 hours and then at 50° C. for a further 2 hours. The solvent was removed under reduced pressure and the residue partitioned between ethyl acetate and water, the organic layer was separated, dried over magnesium sulphate and the solvent removed under reduced pressure. The crude product was purified by column chromatography on silica gel eluding with a solvent gradient of 80:10:0, changing to 0:100:0, followed by 0:95:5, by volume, hexane:ethyl acetate:methanol, to afford methyl (2S)-1-(1,3-benzoxazol-2-yl)-2-piperidinecarboxylate (3.18 g) as a solid. 1 H-NMR (CDCl3)delta:7.35 (1H, d), 7.25 (1H, m), 7.00 (1H, m), 5.00 (1H, d), 4.20 (1H, m), 3.70 (3H, s), 3.35 (1H, t), 2.30 (1H, d), 1.80 (3H, m), 1.60 (1H, m), 1.35 (1H, m). MS:261 (MH+). |
[ 10419-77-9 ]
[ 18650-39-0 ]
[ 170996-97-1 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| (5-Oxo-2, 2-bis-trifluoromethyl- [1, 3] oxathiolan-4-yl) -acetic acid (0.70 g, 2.3 mmol) was dissolved in anhydrous DMF (6 mL) and piperidine-2-carboxylic acid methyl ester hydrochloride (0.38 g, 2.1 mmol) was added to the stirred reaction mixture, followed by dropwise addition of DIEA (0.79 mL, 0.60 g, 4.7 mrnol). After 80 min at room temperature, the solvent was removed in vacuo and the residue was dissolved in ethyl acetate (60 mL). The solution was extracted with aqueous HCl (2 M, 2 x 4 mL), dried over Na2S04, filtered, and concentrated in vacuo. The residue was dissolved in a mixture of water (8 mL) and dioxane (3 mL). Iodomethyl-phosphonic acid diethyl ester (0.65 g, 2.3 mmol) and subsequently NaHCO3 (0.59 g, 7.0 mmol) were added to the stirred reaction mixture. After stirring for 14 h at 55 °C, the reaction mixture was concentrated in vacuo to a volume of approximately 10 mL. 1 M aqueous Na2CO3 (4 mL) was added and the aqueous solution was extracted with ethyl acetate (10 mL). The aqueous layer was then acidified with 6 M aqueous HC1 to pH 1 and extracted with ethyl acetate (3 x 30 mL). The combined organic layers were dried over Na2S04, filtered, and concentrated in vacuo. The residue was purified by flash chromatography over silica gel (elution with DCM/methanol/acetic acid 40: 10: 1) to give the title compound as a colorless oil. MS (m/z) : 426.5 [M+H]. |

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