Structure of 194726-40-4
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CAS No. : | 194726-40-4 |
Formula : | C13H23NO4 |
M.W : | 257.33 |
SMILES Code : | O=C(N1C[C@H](C(OCC)=O)CCC1)OC(C)(C)C |
MDL No. : | MFCD07374389 |
InChI Key : | YCXCRFGBFZTUSU-SNVBAGLBSA-N |
Pubchem ID : | 1514446 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 18 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.85 |
Num. rotatable bonds | 6 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 72.3 |
TPSA ? Topological Polar Surface Area: Calculated from |
55.84 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.35 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.82 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.82 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.58 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.42 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.0 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.19 |
Solubility | 1.68 mg/ml ; 0.00652 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.61 |
Solubility | 0.628 mg/ml ; 0.00244 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.76 |
Solubility | 4.48 mg/ml ; 0.0174 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.58 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.06 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87.1% | With sodium tetrahydroborate; ethanol; at 50℃; | compound IV 5.42 g (0.025 mol) in step S3, 95% ethanol 23 mL, and sodium borohydride 2.87 g (0.075 mol) was added to the reaction flask, stirred and the reaction temperature was controlled at 50 C.The progress of the reaction was monitored by thin layer chromatography until the compound IV was completely reacted and the reaction was completed;Add hydrochloric acid solution to adjust the pH to 7, and then concentrate under reduced pressure, and extract the organic phase with ethyl acetate.The extract is sequentially passed through saturated sodium bicarbonate,Washed with purified water and saturated aqueous sodium chloride solution, dried over anhydrous sodium sulfate for 24h.After suction filtration, the filtrate was obtained, and the filtrate was evaporated under reduced pressure to give a solvent.The crystals were naturally cooled, suction filtered to obtain a cake, and the cake was recrystallized from n-hexane and dried under reduced pressure at 40 C.(R)-N-tert-butoxycarbonyl-3-hydroxymethylpiperidine (Compound V) product 3.72g,The yield of this step was 87.1% (based on compound IV), and the purity was 98.8% (detected by high performance liquid chromatography). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With sodium carbonate; In tetrahydrofuran; water; at 0 - 20℃; for 20h;pH 10.0; | Adding Compound III in step S2 and 25 mL of purified water to a reaction flask, stirring to dissolve Compound III to obtain an aqueous solution of Compound III;Sodium carbonate was added to the reaction flask to adjust the pH to 10, and 25 mL of tetrahydrofuran was added to the reaction vessel.And controlling the temperature to 0 C, a solution of Boc anhydride tetrahydrofuran (4.0 g of Boc anhydride + 7 ml of tetrahydrofuran) having a temperature of 0 to 5 C was added dropwise to the reaction vessel under stirring.The reaction was carried out for 20 h at room temperature, and the progress of the reaction was monitored by thin layer chromatography until the compound III was completely reacted, and the reaction was completed;After cooling to room temperature, the aqueous phase and the organic phase are separated, and the organic phase is sequentially neutralized with dilute hydrochloric acid.Wash with water and a saturated aqueous solution of sodium chloride, dry over anhydrous sodium sulfate for 2 to 4 h, and then suction filtered to give filtrate, and the filtrate is concentrated under reduced pressure at 40 C.The reaction product oil concentrate is obtained; the temperature of the reaction product concentrate is controlled to be -2 to 2 C, and 1 mL of n-hexane is added to the reaction product concentrate, and then placed in a refrigerator at -10 to 0 C for 4 hours to freeze and crystallize.Filtering to obtain a filter cake, and rinsing the filter cake with a small amount of n-hexane,Drying under reduced pressure at 40 C gave compound IV 5.42 g, the yield of this step was 92% (based on compound III); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium bicarbonate; sodium monohydrogen sulfate; In tetrahydrofuran; n-heptane; ethyl acetate; | (R)-Ethyl nipetcotate tartrate (10.0 g, 32.5 mmol) were suspended in tetrahydrofuran (90 ml). An 1 N solution of sodium hydroxidein water (98 ml, 98 mmol) was added. A solution of di-tert-butyl dicarbonate (7.10 g, 32.5 mmol) in tetrahydrofuran (90 ml) was added. The reaction mixture was stirred for 16 h at room temperature. Ethyl acetate (400 ml) was added. The reaction mixture was washed with a 10% aqueous solution of sodium hydrogen sulfate (400 ml). The aqueous solution was extracted with ethyl acetate (2*200 ml). The combined organic layers were washed with a saturated aqueous solution of sodium hydrogen carbonate (200 ml) and dried over magnesium sulfate. The solvent was removed in vacuo. The crude product was purified by flash chromatography on silica (90 g), using ethyl acetate/heptane 1:4 as eluent, to give 4.13.g of (3R)-piperidine-1,3-dicarboxylic acid 1-tert-butyl ester 3-ethyl ester. 1H-NMR (CDCl3): delta 1.27 (t, 3H); 1.48 (s, 9H); 1.54 (m, 1H); 1.62 (m, 1H); 1.73 (m, 2H); 2.05 (m, 1H); 2.45 (m, 1H); 2.81 (m, 1H); 2.98 (br, 1H); 3.93 (m, 1H); 4.14 (q, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With diisobutylaluminium hydride; In diethyl ether; water; toluene; | A 1.2 M solution of diisobutylaluminum hydride in toluene (30.8 ml, 36.9 mmol) was added at -78 C. to a solution of <strong>[194726-40-4](3R)-piperidine-1,3-dicarboxylic acid 1-tert-butyl ester 3-ethyl ester</strong> (4.13 g, 16.1 mmol) in diethyl ether (30 ml). The reaction mixture was stirred for 2.5 h at -78 C. Water (9.6 ml) was added dropwise. The reaction mixture was warmed to room temperature. The precipitation was removed by filtration through a plug of celite. The celite was washed with tert-butyl methyl ether (3*100 ml). The liquids were combined and dried over magnesium sulfate. The solvent was removed in vacuo, to give 1.94 g of crude (3R)-3-formylpiperidine-1-carboxylic acid tert-butyl ester, which was used for the next step without further purification. 1H-NMR (CDCl3): delta 1.45 (s, 9H); 1.67 (m, 2H); 1.95 (m, 1H); 2.43 (m, 1H); 3.10 (m, 1H); 3.32 (dd, 1H); 3.52 (d, 1H); 3.66 (m, 1H); 3.95 (m, 1H); 9.69 (s, 1H). (3S)-3-(Dimethylaminomethyl)piperidine-1-carboxylic acid tert-butyl ester |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Methyl magnesium bromide (2 mL, 3M in diethyl ether, 6 mmol) was added dropwise to a solution of the <strong>[194726-40-4]1-tert-butyl 3-ethyl (3R)-piperidine-1,3-dicarboxylate</strong> (514 mg, 2 mmol) in diethyl ether (20 mL) and THF (20 mL) during 10 min. The mixture was stirred for 30 min and thereafter slowly quenched with NH3Cl solution (10 mL, 3M). The phases were separated and the organic phase was evaporated to yield an oil. The oil was dissolved in EtOAc (50 mL) and HCl was bubbled through the solution in a gentle stream for 10 minutes and then left at room temperature on. The solvent was evaporated and the residue dissolved in EtOAc (100 mL) and stirring for 3 h at room temperature gave a solid that was filtered off and dried in vacuum to yield the title compound as white crystals. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6.25 g (92%) | With hydrogenchloride; LiOH; triethylamine; In 1,4-dioxane; methanol; water; ethyl acetate; | EXAMPLE 23 Synthesis of N-Boc-(R)-Nipecotic Acid (25) A solution of ethyl N-Boc-(R)-nipecotate-L-tartrate (24) (10.00 g, 32.5 mol) in 50 mL of dioxane and 50 mL of H2O was cooled in ice-water bath and NEt3 (9 mL) was added with stirring. Stirring and cooling were continued while di-tert-butyl dicarbonate (7.44 g, 1.05 eq.) was introduced. The mixture was warmed to room temperature and stirred for 4 h. 100 mL of Ethyl acetate and 20 mL of H2O were added to mixture. The aqueous layer was extracted with ethyl acetate (2*100 mL). The extracts were combined and washed with aqueous potassium carbonate (sat., 2*50 mL), aqueous HCl (5%, 2*50 mL), brine (50 mL), and dried over anhydrous sodium sulfate, filtered and evaporated to give ethyl N-Boc-(R)-nipecotate as a colorless oil 8.37 g (100%). To a solution of ethyl N-Boc-(R)-nipecotate (7.61 g, 29.6 mmol) in 25 mL of methanol was added LiOH (2.48 g, 2 eq.) in 25 mL of H2O dropwise at 4 C. The reaction mixture was stirred overnight at 4 C. The pH of the mixture was adjusted to ca. 1 by adding aqueous HCl (10% w/w). The aqueous layer was extracted with ethyl acetate (3*100 mL). The extracts were combined and washed with aqueous NH4Cl (sat., 2*50 mL), brine (50 mL), and dried over anhydrous Na2SO4, filtered and evaporated to give N-Boc-(R)-nipecotic acid 25 as a white solid 6.25 g (92%). |
6.25 g (92%) | With hydrogenchloride; LiOH; triethylamine; In 1,4-dioxane; methanol; water; ethyl acetate; | EXAMPLE 23 Synthesis of N-Boc-(R)-nipecotic acid (25) A solution of ethyl N-Boc-(R)-nipecotate-L-tartrate (24) (10.00 g, 32.5 mol) in 50 mL of dioxane and 50 mL of H2O was cooled in ice-water bath and NEt3 (9 mL) was added with stirring. Stirring and cooling were continued while di-tert-butyl dicarbonate (7.44 g, 1.05 eq.) was introduced. The mixture was warmed to room temperature and stirred for 4 h. 100 mL of Ethyl acetate and 20 mL of H2O were added to mixture. The aqueous layer was extracted with ethyl acetate (2*100 mL). The extracts were combined and washed with aqueous potassium carbonate (sat., 2*50 mL), aqueous HCl (5%, 2*50 mL), brine (50 mL), and dried over anhydrous sodium sulfate, filtered and evaporated to give ethyl N-Boc-(R)-nipecotate as a colorless oil 8.37 g (100%). To a solution of ethyl N-Boc-(R)-nipecotate (7.61 g, 29.6 mmol) in 25 mL of methanol was added LiOH (2.48 g, 2 eq.) in 25 mL of H2O dropwise at 4 C. The reaction mixture was stirred overnight at 4 C. The pH of the mixture was adjusted to ca. 1 by adding aqueous HCl (10% w/w). The aqueous layer was extracted with ethyl acetate (3*100 mL). The extracts were combined and washed with aqueous NH4Cl (sat., 2*50 mL), brine (50 mL), and dried over anhydrous NaSO4, filtered and evaporated to give N-Boc-(R)-nipecotic acid 25 as a white solid 6.25 g (92%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With hydrazine hydrate; at 120 - 125℃; for 5h; | (R)-N-Boc-ethyl-piperidine-3-carboxylate (1.1 kg, 4.28 mol) was liquefied by warming and transferred to a round bottom flask (10 L), to this was charged hydrazine hydrate (0.470 kg, 9.41 mol) and stirring was started. The reaction mixture was stirred at about 120C to 125C for 5 hours. As the TLC showed (Chloroform: methanol 9:1) completion of reaction, the reaction mixture was cooled to room temperature and diluted with water (5.5 L) followed by dichloromethane (11 L) and was stirred for 20 minutes. The layerswere separated and aqueous layer was extracted with additional dichloro methane (5.5 L). Combined organic layer was washed with water (2.75 L). The organic layer was dried over sodium sulfate and evaporated under vacuum to provide a thick gel which upon stirring and seeding in the presence of cyclohexane (5.5 L) provided white solid. The suspension was filtered and wet cake was washed with fresh cyclohexane (0.5 L). The cake was dried at 35C under vacuum to provide (R)-N-Boc-piperidine-3-carboxylic acid hydrazide as a white solid in 0.90 kg quantity in 87% yield. Analysis NMR: (CDC13): 7.42 (br s, 1H), 3.92 (d, 1H), 3.88 (s, 2H), 3.54-3.65 (br s, 1H), 3.17 (br t, 1H), 2.98 (br s, 1H), 2.22-2.32 (br s, 1H), 1.82-1.90 (br m, 2H), 1.76 (s, 1H), 1.60-1.70 (m, 1H), 1.45 (s, 9H). Mass (M+l): 244.1 for C11H21N303. Specific rotation: [ ]25D = -53.5 (c 0.5, Methanol). HPLC purity: 99% |
87% | With hydrazine hydrate; at 120 - 125℃; for 5h;Large scale; | (R)-N-Boc-ethyl-piperidine-3-carboxylate (1.1 kg, 4.28 mol) was liquefied by warming and transferred to a round bottom flask (10 L), to this was charged hydrazine hydrate (0.470 kg, 9.41 mol) and stirring was started. The reaction mixture was stirred at about 120 C. to 125 C. for 5 hours. As the TLC showed (Chloroform:methanol 9:1) completion of reaction, the reaction mixture was cooled to room temperature and diluted with water (5.5 L) followed by dichloromethane (11 L) and was stirred for 20 minutes. The layers were separated and aqueous layer was extracted with additional dichloromethane (5.5 L). Combined organic layer was washed with water (2.75 L). The organic layer was dried over sodium sulfate and evaporated under vacuum to provide a thick gel which upon stirring and seeding in the presence of cyclohexane (5.5 L) provided white solid. The suspension was filtered and wet cake was washed with fresh cyclohexane (0.5 L). The cake was dried at 35 C. under vacuum to provide (R)-N-Boc-piperidine-3-carboxylic acid hydrazide as a white solid in 0.90 kg quantity in 87% yield. ;Analysis NMR: (CDCl3): 7.42 (br s, 1H), 3.92 (d, 1H), 3.88 (s, 2H), 3.54-3.65 (br s, 1H), 3.17 (br t, 1H), 2.98 (br s, 1H), 2.22-2.32 (br s, 1H), 1.82-1.90 (br m, 2H), 1.76 (s, 1H), 1.60-1.70 (m, 1H), 1.45 (s, 9H). Mass (M+1): 244.1 for C11H21N3O3 |
With hydrazine; In methanol; at 100℃; for 3h;Microwave irradiation; | Stirred a solution of (R)-l-tert-butyl 3-ethyl piperidine-l,3-dicarboxylate (5 g,19.4 mmol), hydrazine (anhydrous; 2 ml) in MeOH (5 ml) in a microwave oven at 100C for 3 hours. Cooled and solvent was evaporated. Chromatographed residue on silica gel eluting with 3% MeOH: DCM to yield (R)-tert-butyl 3 -(hydrazinecarbonyl)piperidine-l -carboxylate as colorless oil (5.1 g). |
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