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Structure of 20075-26-7

Chemical Structure| 20075-26-7

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Product Details of [ 20075-26-7 ]

CAS No. :20075-26-7
Formula : C5H8N2O
M.W : 112.13
SMILES Code : COCN1C=CN=C1
MDL No. :MFCD00955700
Boiling Point : No data available
InChI Key :XJGYZYRJUUMCAP-UHFFFAOYSA-N
Pubchem ID :88359

Safety of [ 20075-26-7 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 20075-26-7 ] Show Less

Physicochemical Properties

Num. heavy atoms 8
Num. arom. heavy atoms 5
Fraction Csp3 0.4
Num. rotatable bonds 2
Num. H-bond acceptors 2.0
Num. H-bond donors 0.0
Molar Refractivity 29.38
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

27.05 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.34
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

-0.11
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

0.34
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

-0.53
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

0.21
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

0.25

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-0.8
Solubility 17.9 mg/ml ; 0.16 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-0.01
Solubility 111.0 mg/ml ; 0.988 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-0.88
Solubility 14.7 mg/ml ; 0.131 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-7.06 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.78

Application In Synthesis of [ 20075-26-7 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 20075-26-7 ]

[ 20075-26-7 ] Synthesis Path-Downstream   1~41

  • 1
  • [ 527-69-5 ]
  • [ 20075-26-7 ]
  • [ 62458-00-8 ]
  • 2
  • [ 288-32-4 ]
  • [ 107-30-2 ]
  • [ 20075-26-7 ]
YieldReaction ConditionsOperation in experiment
58% To a solution of lH-imidazole (40.8 g, 600.00 mmol) in EtOH (1200 niL) under nitrogen was added a solution of sodium ethanolate (40.8 g, 600.00 mmol) in THF (1200 rnL). The resulting solution was stirred for 1 hr at room temperature and concentrated under vacuum. To the residue was added chloro(methoxy) methane (53.4 g, 667.50 mmol) and the resulting solution was stirred for overnight at room temperature. The solids were filtered. The filtrate was concentrated and distilled under reduced pressure, resulted in 40 g (58%) of l-(methoxym ethyl)- lH-imidazole as white oil.
Step A. 1-Methoxymethyl-1H-imidazole To a solution of 1.06 g of imidazole (15.56 mmol) in 20 ml of THF at 0 C. was added 658 mg (16.45 mmol) of NaH (40% dispersion in oil) and the mixture was stirred at 0 C. for 30 mins.After this time, 1.2 ml (15.7 mmol) of chloromethyl methyl ether were added and the mixture was allowed to warm to room temperature and stirred for 14 h.After this time the reaction was quenched by the addition of a saturated aqueous solution of ammonium chloride, allowed to warm to room temperature, and extracted with EtOAc. The combined organic layers were washed with brine, dried over MgSO4, filtered and the filtrate was concentrated.The residue was purified by chromatography on silica gel (hexanes:EtOAc, 1:1) to give the title compound. 1H-NMR (CDCl3) delta 3.21 (s, 3H), 5.18 (s, 2H), 7.00 (d, J=19 Hz, 2H0, 7.54 (s, 1H).
The starting material was prepared as follows : 1-Methoxymethyl-imidazole To a solution of imidazole (1. 00 g, 14. 7 MMOL) in anhydrous THF (30 ML) AT-78 C was added in portions sodium hydride (0. 88 g of a 60% dispersion in oil, 22. 0 MMOL). The mixture was avowed to warm to room temperature, stirred for 30 minutes, then cooled to- 78 C, and chloromethyl methyl ether (1. 06 ML, 14. 0 MMOL) SLOWLY added. After 2 hours at- 78 C, sat. NAHC03 was added to quench the reaction. The solvent was removed and a solution of the resultant residue in ethyl acetate was washed with sat. NAHC03, dried over MgS04, filtered, and concentrated to give 1. 3 G OF an oil, which contained the NaH dispersion oil, displayed AN 1H NMR that matched previous (Zhao, et AL., J. Med. CHEM., VOL. 40, pp. 216-225 (1997)), and was used without further purification
  • 3
  • [ 3282-30-2 ]
  • [ 20075-26-7 ]
  • [ 90408-24-5 ]
  • 4
  • [ 100-52-7 ]
  • [ 20075-26-7 ]
  • [ 90408-23-4 ]
  • 7
  • [ 20075-26-7 ]
  • [ 68-12-2 ]
  • [ 160425-46-7 ]
  • 8
  • [ 13154-24-0 ]
  • [ 20075-26-7 ]
  • [ 107-02-8 ]
  • 1-Methoxymethyl-2-(1'-triisopropylsilyloxyprop-2'-enyl)imidazole [ No CAS ]
  • 9
  • [ 20075-26-7 ]
  • [ 74-88-4 ]
  • [ 90408-22-3 ]
  • 11
  • [ 108-24-7 ]
  • [ 114094-71-2 ]
  • [ 20075-26-7 ]
  • Acetic acid 2-isopropoxy-1-(1-methoxymethyl-1H-imidazol-2-yl)-4-oxo-3-phenyl-cyclobut-2-enyl ester [ No CAS ]
  • 12
  • [ 38100-34-4 ]
  • [ 20075-26-7 ]
  • 1-amino-3-methoxymethylimidazolium picrate [ No CAS ]
  • 13
  • [ 20075-26-7 ]
  • [ 2719-27-9 ]
  • Cyclohexyl-(4,5-dibromo-1H-imidazol-2-yl)-methanone [ No CAS ]
  • 14
  • [ 20075-26-7 ]
  • [ 76-02-8 ]
  • [ 172805-61-7 ]
YieldReaction ConditionsOperation in experiment
61% With triethylamine; In dichloromethane; at 20℃; for 2.5h;Inert atmosphere; To a solution of l-(methoxymethyl)-lH-imidazole (52 g, 464.29 mmol) in DCM (1000 mL) under N2 was added 2,2,2-trichloroacetyl chloride (92 g, 511.11 mmol) dropwise. The resulting solution was stirred for 30 minutes at room temperature. To it was added Et3N (51 g, 504.00 mmol) dropwise and the resulting solution was stirred for 2 hours at room temperature. The reaction mixture was concentrated and the residue was purified on a silica gel column with ethyl acetate/petroleum ether (1 :20), resulted in 73 g (61%) of 2,2,2- trichloro-l-(l-(methoxymethyl)-lH-imidazol-2-yl)ethanone as yellow oil.
  • 15
  • [ 20075-26-7 ]
  • [ 188801-96-9 ]
  • [ 188802-03-1 ]
  • 16
  • [ 20075-26-7 ]
  • [ 188801-96-9 ]
  • {2-[6-(1-Methoxymethyl-1H-imidazol-2-yl)-purin-9-yl]-ethoxymethyl}-phosphonic acid diethyl ester [ No CAS ]
  • 17
  • [ 676-97-1 ]
  • [ 20075-26-7 ]
  • C6H10ClN2O2P [ No CAS ]
  • 18
  • [ 824-72-6 ]
  • [ 20075-26-7 ]
  • C11H12ClN2O2P [ No CAS ]
YieldReaction ConditionsOperation in experiment
72% EXAMPLE 9 1, 2, 8, 8a-Tetrahydro-7-methyl-2- 4-(4-butyramido-N-methoxymethylimidazole-2-carboxyamido)-N-methoxymethylimidazole-2-carboxy!cyclopropa[c]-pyrrolo 3,[2-e]indole-4-(5H)-one (CP8-27. Compound CP8-27 of the formula X, where R=0; Het=N-methoxymethylimidazole; m=2; n=0; A=butyramido, was prepared. 5-Benzyloxy-1-chloromethyl-8-methyl 3- 4-(4-butyramido-N-methoxymethylimidazole-2-carboxyamido)-N-methoxymethylimidazole-2-carboxy!-1, 2-dihydro-3H-pyrrolo 3,[2-e]indole (CP8-19) was synthesised using the same method as described for CP8-18 except that 4-(4-butyamido-N-methoxymethylimidazole-2-carboxamido-)-N-methoxymethylimidazole-2-carboxylic acid CP8-13 was used in the yield of 69%: 1 H NMR (CDCl3): 10.65 (br s, 1H, NH), 9.03 (br s, 1H, NH), 8.28 (br s, 1H, NH), 7.82 (s, 1H, Im-H), 7.81 (s, 1H, Im-H), 7.66 (s, 1 H, C4-H), 7.47-7.36 (m, 5H, C6 H5), 6.99 (s, 1H, C7-H), 5.84-5.68 (m, 4H, 2XCH2 OCH3), 5.20-5.05 (dd, 2 H, J=11.0, 33.0 Hz, PhCH2 O), 4.89-4.85 (d, 1H, NCHH, J=11.5 Hz), 4.80-4.74 (dd, 1H, J=7.5, 11.0 Hz, NCHH), 4.02-3.80 (m, 2H, CHHCl, CH2 ClCHCH2), 3.47-3.37 (m, 4H, CHHCl, OCH3), 3.30 (s, 3 H, OCH3), 2.50-2.40 (t, 2H, J=7Hz, CH3 CH2 CH2), 2.40 (s, 3H, ARCH3), 1.87-1.74 (m, 2H, CH3 CH2 CH2), 1.05-1.0 (t, 3H, J=7 Hz, CH3 CH2 CH2), FABHRMS calcd for C35 H39 N8 O6 ClH 703.2759, found 703.2718. CP8-27 was synthesised from CP8-9 (30 mg, 42 umol) using a similar method as described for CP8-26 as a grey powder (17.8 mg, 72% yield): 1 H NMR (acetone-d6): 10.58 (br s, 1H, NH), 9.51 (br s, 1H, NH), 9.48 (br s, 1H, NH), 7.72 (s, 1H, Im-H), 7.65 (s, 1H, Im-H), 6.93-6.92 (m, 1H, C6-H), 6.81 (br s, 1H, C3-H), 5.88 (s, 3H, CH2 OCH3), 5.77-5.62 (dd, 2H, J=11.0, 32.0 Hz, CH2 OCH3), 4.69-4.65 (d, 1H, J=11.0 Hz, NCHH), 4.51-4.46 (dd, 1H, J=5.0, 11.0 Hz, NCHH), 3.36 (s, 3H, OCH3), 3.33 (s, 3 H, OCH3), 3.12-3.07 (m, 1H, CH2 CHCH2), 2.43-2.38 (t, 2H, J=7Hz, CH3 CH2 CH2), 2.20-2.17 (dd, 1H, J=4.5, 7.5 Hz, C8HH), 1.76-1.63 (m, 2H, CH3 CH2 CH2), 1.33-1.29 (t, 1H, J=4.5 Hz, C8-HH), 0.98-0.93 (t, 3H, J=7 Hz, CH3 CH2 CH2), FABHRMS calcd for C30 H34 N6 O6 H 577.2523, found 577.2523.
The following compounds may be mentioned as examples of heterocycles of the formula (III): 1-methylimidazole, ... 1-vinylimidazole, 1-cyanomethylimidazole, 1-(2-cyanoethyl)-imidazole, 1-difluoromethylimidazole, 1-(methoxymethyl)-imidazole, 1-(methoxycarbonylmethyl)-imidazole, 1-phenylimidazole, thiazole, ...
The following compounds may be mentioned as examples of heterocycles of the formula (III): 1-Methylpyrrole, 1-isopropylpyrrole, 1-methoxymethylimidazole, 1-isopropylimidazole, 1-cyanomethylimidazole, 1-(2-cyanoethyl)-imidazole, 1-allylimidazole, 1-difluoromethylimidazole, 1-trifluoromethylimidazole, ...
  • 21
  • [ 553-90-2 ]
  • [ 20075-26-7 ]
  • [ 244086-66-6 ]
  • 1,2-bis-(3-methoxymethyl-3<i>H</i>-imidazol-4-yl)-ethane-1,2-dione [ No CAS ]
  • 22
  • [ 20075-26-7 ]
  • poly(chloromethylstyrene-co-divinylbenzene) [ No CAS ]
  • [ImC(MOM)]5-poly(chloromethylstyrene-co-divinylbenzene) [ No CAS ]
  • 23
  • [ 20075-26-7 ]
  • poly(chloromethylstyrene-co-divinylbenzene) [ No CAS ]
  • [ImC(MOM)]22-poly(chloromethylstyrene-co-divinylbenzene) [ No CAS ]
  • 24
  • [ 20075-26-7 ]
  • [ 308144-87-8 ]
  • 2-Amino-9-{2-[(diisopropoxyphosphoryl)methoxy]ethyl}-6-[1-(methoxymethyl)imidazol-2-yl]purine [ No CAS ]
  • 25
  • [ 20075-26-7 ]
  • poly(iodomethylstyrene-co-divinylbenzene) [ No CAS ]
  • [ImC(MOM)]22-poly(iodomethylstyrene-co-divinylbenzene) [ No CAS ]
  • 26
  • [ 636-53-3 ]
  • [ 20075-26-7 ]
  • 1,3-bis{bis[1-(methoxymethyl)imidazol-2-yl]hydroxymethyl}-benzene [ No CAS ]
  • 27
  • [ 20075-26-7 ]
  • [ 88284-48-4 ]
  • 1-methoxymethyl-3-phenylimidazolium triflate [ No CAS ]
  • 28
  • [ 20075-26-7 ]
  • (1-methoxymethyl-1H-imidazol-2-yl)-methyl-phosphinic acid potassium salt [ No CAS ]
  • 29
  • [ 20075-26-7 ]
  • (1-methoxymethyl-1H-imidazol-2-yl)-phenyl-phosphinic acid sodium salt [ No CAS ]
  • 30
  • [ 20075-26-7 ]
  • [ 1026411-22-2 ]
  • 32
  • [ 20075-26-7 ]
  • [ 185614-42-0 ]
  • 33
  • [ 20075-26-7 ]
  • [ 1025943-06-9 ]
  • 34
  • [ 20075-26-7 ]
  • [ 185614-41-9 ]
  • 38
  • [ 20075-26-7 ]
  • 4-Butyrylamino-1-methoxymethyl-1H-imidazole-2-carboxylic acid [2-(4-ethyl-4-hydroxy-3,13-dioxo-3,4,12,13-tetrahydro-1H-2-oxa-6,12a-diaza-dibenzo[b,h]fluoren-9-yloxy)-ethyl]-amide [ No CAS ]
  • 39
  • [ 20075-26-7 ]
  • 10-(2-{1-(methoxymethyl)-4-[1-(methoxymethyl)-4-butyramidoimidazole-2-carboxamido]imidazole-2-carboxamido}ethoxy)-20(R,S)-camptothecin [ No CAS ]
  • 40
  • [ 20075-26-7 ]
  • 8-Acetoxy-7-isopropoxy-6-phenyl-1-(methoxymethyl)-imidazo<1,2-a>pyridin-5-one [ No CAS ]
  • 41
  • [ 20075-26-7 ]
  • [ 160425-46-7 ]
 

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