Structure of 20075-26-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 20075-26-7 |
Formula : | C5H8N2O |
M.W : | 112.13 |
SMILES Code : | COCN1C=CN=C1 |
MDL No. : | MFCD00955700 |
Boiling Point : | No data available |
InChI Key : | XJGYZYRJUUMCAP-UHFFFAOYSA-N |
Pubchem ID : | 88359 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 8 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.4 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 29.38 |
TPSA ? Topological Polar Surface Area: Calculated from |
27.05 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.34 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.11 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.34 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.53 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.21 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.25 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.8 |
Solubility | 17.9 mg/ml ; 0.16 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.01 |
Solubility | 111.0 mg/ml ; 0.988 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.88 |
Solubility | 14.7 mg/ml ; 0.131 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.06 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.78 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | To a solution of lH-imidazole (40.8 g, 600.00 mmol) in EtOH (1200 niL) under nitrogen was added a solution of sodium ethanolate (40.8 g, 600.00 mmol) in THF (1200 rnL). The resulting solution was stirred for 1 hr at room temperature and concentrated under vacuum. To the residue was added chloro(methoxy) methane (53.4 g, 667.50 mmol) and the resulting solution was stirred for overnight at room temperature. The solids were filtered. The filtrate was concentrated and distilled under reduced pressure, resulted in 40 g (58%) of l-(methoxym ethyl)- lH-imidazole as white oil. | |
Step A. 1-Methoxymethyl-1H-imidazole To a solution of 1.06 g of imidazole (15.56 mmol) in 20 ml of THF at 0 C. was added 658 mg (16.45 mmol) of NaH (40% dispersion in oil) and the mixture was stirred at 0 C. for 30 mins.After this time, 1.2 ml (15.7 mmol) of chloromethyl methyl ether were added and the mixture was allowed to warm to room temperature and stirred for 14 h.After this time the reaction was quenched by the addition of a saturated aqueous solution of ammonium chloride, allowed to warm to room temperature, and extracted with EtOAc. The combined organic layers were washed with brine, dried over MgSO4, filtered and the filtrate was concentrated.The residue was purified by chromatography on silica gel (hexanes:EtOAc, 1:1) to give the title compound. 1H-NMR (CDCl3) delta 3.21 (s, 3H), 5.18 (s, 2H), 7.00 (d, J=19 Hz, 2H0, 7.54 (s, 1H). | ||
The starting material was prepared as follows : 1-Methoxymethyl-imidazole To a solution of imidazole (1. 00 g, 14. 7 MMOL) in anhydrous THF (30 ML) AT-78 C was added in portions sodium hydride (0. 88 g of a 60% dispersion in oil, 22. 0 MMOL). The mixture was avowed to warm to room temperature, stirred for 30 minutes, then cooled to- 78 C, and chloromethyl methyl ether (1. 06 ML, 14. 0 MMOL) SLOWLY added. After 2 hours at- 78 C, sat. NAHC03 was added to quench the reaction. The solvent was removed and a solution of the resultant residue in ethyl acetate was washed with sat. NAHC03, dried over MgS04, filtered, and concentrated to give 1. 3 G OF an oil, which contained the NaH dispersion oil, displayed AN 1H NMR that matched previous (Zhao, et AL., J. Med. CHEM., VOL. 40, pp. 216-225 (1997)), and was used without further purification |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With triethylamine; In dichloromethane; at 20℃; for 2.5h;Inert atmosphere; | To a solution of l-(methoxymethyl)-lH-imidazole (52 g, 464.29 mmol) in DCM (1000 mL) under N2 was added 2,2,2-trichloroacetyl chloride (92 g, 511.11 mmol) dropwise. The resulting solution was stirred for 30 minutes at room temperature. To it was added Et3N (51 g, 504.00 mmol) dropwise and the resulting solution was stirred for 2 hours at room temperature. The reaction mixture was concentrated and the residue was purified on a silica gel column with ethyl acetate/petroleum ether (1 :20), resulted in 73 g (61%) of 2,2,2- trichloro-l-(l-(methoxymethyl)-lH-imidazol-2-yl)ethanone as yellow oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | EXAMPLE 9 1, 2, 8, 8a-Tetrahydro-7-methyl-2- 4-(4-butyramido-N-methoxymethylimidazole-2-carboxyamido)-N-methoxymethylimidazole-2-carboxy!cyclopropa[c]-pyrrolo 3,[2-e]indole-4-(5H)-one (CP8-27. Compound CP8-27 of the formula X, where R=0; Het=N-methoxymethylimidazole; m=2; n=0; A=butyramido, was prepared. 5-Benzyloxy-1-chloromethyl-8-methyl 3- 4-(4-butyramido-N-methoxymethylimidazole-2-carboxyamido)-N-methoxymethylimidazole-2-carboxy!-1, 2-dihydro-3H-pyrrolo 3,[2-e]indole (CP8-19) was synthesised using the same method as described for CP8-18 except that 4-(4-butyamido-N-methoxymethylimidazole-2-carboxamido-)-N-methoxymethylimidazole-2-carboxylic acid CP8-13 was used in the yield of 69%: 1 H NMR (CDCl3): 10.65 (br s, 1H, NH), 9.03 (br s, 1H, NH), 8.28 (br s, 1H, NH), 7.82 (s, 1H, Im-H), 7.81 (s, 1H, Im-H), 7.66 (s, 1 H, C4-H), 7.47-7.36 (m, 5H, C6 H5), 6.99 (s, 1H, C7-H), 5.84-5.68 (m, 4H, 2XCH2 OCH3), 5.20-5.05 (dd, 2 H, J=11.0, 33.0 Hz, PhCH2 O), 4.89-4.85 (d, 1H, NCHH, J=11.5 Hz), 4.80-4.74 (dd, 1H, J=7.5, 11.0 Hz, NCHH), 4.02-3.80 (m, 2H, CHHCl, CH2 ClCHCH2), 3.47-3.37 (m, 4H, CHHCl, OCH3), 3.30 (s, 3 H, OCH3), 2.50-2.40 (t, 2H, J=7Hz, CH3 CH2 CH2), 2.40 (s, 3H, ARCH3), 1.87-1.74 (m, 2H, CH3 CH2 CH2), 1.05-1.0 (t, 3H, J=7 Hz, CH3 CH2 CH2), FABHRMS calcd for C35 H39 N8 O6 ClH 703.2759, found 703.2718. CP8-27 was synthesised from CP8-9 (30 mg, 42 umol) using a similar method as described for CP8-26 as a grey powder (17.8 mg, 72% yield): 1 H NMR (acetone-d6): 10.58 (br s, 1H, NH), 9.51 (br s, 1H, NH), 9.48 (br s, 1H, NH), 7.72 (s, 1H, Im-H), 7.65 (s, 1H, Im-H), 6.93-6.92 (m, 1H, C6-H), 6.81 (br s, 1H, C3-H), 5.88 (s, 3H, CH2 OCH3), 5.77-5.62 (dd, 2H, J=11.0, 32.0 Hz, CH2 OCH3), 4.69-4.65 (d, 1H, J=11.0 Hz, NCHH), 4.51-4.46 (dd, 1H, J=5.0, 11.0 Hz, NCHH), 3.36 (s, 3H, OCH3), 3.33 (s, 3 H, OCH3), 3.12-3.07 (m, 1H, CH2 CHCH2), 2.43-2.38 (t, 2H, J=7Hz, CH3 CH2 CH2), 2.20-2.17 (dd, 1H, J=4.5, 7.5 Hz, C8HH), 1.76-1.63 (m, 2H, CH3 CH2 CH2), 1.33-1.29 (t, 1H, J=4.5 Hz, C8-HH), 0.98-0.93 (t, 3H, J=7 Hz, CH3 CH2 CH2), FABHRMS calcd for C30 H34 N6 O6 H 577.2523, found 577.2523. | |
The following compounds may be mentioned as examples of heterocycles of the formula (III): 1-methylimidazole, ... 1-vinylimidazole, 1-cyanomethylimidazole, 1-(2-cyanoethyl)-imidazole, 1-difluoromethylimidazole, 1-(methoxymethyl)-imidazole, 1-(methoxycarbonylmethyl)-imidazole, 1-phenylimidazole, thiazole, ... | ||
The following compounds may be mentioned as examples of heterocycles of the formula (III): 1-Methylpyrrole, 1-isopropylpyrrole, 1-methoxymethylimidazole, 1-isopropylimidazole, 1-cyanomethylimidazole, 1-(2-cyanoethyl)-imidazole, 1-allylimidazole, 1-difluoromethylimidazole, 1-trifluoromethylimidazole, ... |