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Chemical Structure| 2040-90-6 Chemical Structure| 2040-90-6

Structure of 2040-90-6

Chemical Structure| 2040-90-6

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Product Details of [ 2040-90-6 ]

CAS No. :2040-90-6
Formula : C6H4ClFO
M.W : 146.55
SMILES Code : OC1=C(F)C=CC=C1Cl
MDL No. :MFCD01631574
Boiling Point : No data available
InChI Key :QIAQIYQASAWZPP-UHFFFAOYSA-N
Pubchem ID :2773710

Safety of [ 2040-90-6 ]

GHS Pictogram:
Signal Word:Danger
Hazard Statements:H302-H314-H361-H317-H340-H411
Precautionary Statements:P501-P273-P272-P260-P270-P202-P201-P264-P280-P391-P308+P313-P362+P364-P303+P361+P353-P333+P313-P301+P330+P331-P301+P312+P330-P304+P340+P310-P305+P351+P338+P310-P405
Class:8
UN#:1759
Packing Group:

Computational Chemistry of [ 2040-90-6 ] Show Less

Physicochemical Properties

Num. heavy atoms 9
Num. arom. heavy atoms 6
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 2.0
Num. H-bond donors 1.0
Molar Refractivity 33.43
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

20.23 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.67
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

2.22
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.6
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

2.51
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.45
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.29

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.64
Solubility 0.335 mg/ml ; 0.00229 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.28
Solubility 0.77 mg/ml ; 0.00525 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-2.7
Solubility 0.295 mg/ml ; 0.00201 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-5.62 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

2.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.42

Application In Synthesis of [ 2040-90-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 2040-90-6 ]

[ 2040-90-6 ] Synthesis Path-Downstream   1~35

  • 3
  • [ 53145-38-3 ]
  • [ 2040-90-6 ]
YieldReaction ConditionsOperation in experiment
With boron tribromide; In dichloromethane; at -78 - 20℃; for 16h; 2-Chloro-6-fluoro anisole (5 g, 31.13 mmol) was dissolved in DCM (300 mL) and cooled to about -78° C. To the solution was added BBr3 (7.35 mL, 77.8 mmol) in one portion. The reaction was warmed to r.t, stirred for about 16 hours and poured over ice to quench remaining BBr3. The material was partitioned between water and DCM (500 mL each). The aqueous layer was back extracted with DCM (200 mL), and the combined organics were dried (NaSO4), filtered and concentrated to give the product (4.60 g) as a dark oil. MS found 145.0 M-1
  • 4
  • [ 2040-90-6 ]
  • [ 20172-36-5 ]
  • 2-(2-chloro-6-fluoro-phenoxy)-<i>N</i>-(4-ethyl-phenyl)-acetamide [ No CAS ]
  • 5
  • [ 2040-90-6 ]
  • [ 16634-82-5 ]
  • 2-(2-chloro-6-fluoro-phenoxy)-<i>N</i>-<i>p</i>-tolyl-acetamide [ No CAS ]
  • 6
  • [ 2040-90-6 ]
  • [ 459-57-4 ]
  • 4-(2-chloro-6-fluorophenoxy)benzaldehyde [ No CAS ]
  • 7
  • [ 899427-23-7 ]
  • [ 2040-90-6 ]
  • 8
  • [ 199585-08-5 ]
  • [ 2040-90-6 ]
  • 9
  • C13H20FNO2Si [ No CAS ]
  • [ 2040-90-6 ]
  • 10
  • C13H19ClFNO2Si [ No CAS ]
  • [ 2040-90-6 ]
  • 11
  • [ 2040-90-6 ]
  • [ 1055705-98-0 ]
  • 12
  • [ 2040-90-6 ]
  • (Z)-2-Benzoylamino-3-[4-(2-chloro-6-fluoro-phenoxy)-phenyl]-acrylic acid [ No CAS ]
  • 13
  • [ 2040-90-6 ]
  • [ 220991-20-8 ]
  • 14
  • [ 2040-90-6 ]
  • [ 332903-74-9 ]
  • 15
  • [ 2040-90-6 ]
  • [ 332903-83-0 ]
  • 16
  • [ 2040-90-6 ]
  • [ 332903-78-3 ]
  • 17
  • [ 2040-90-6 ]
  • [ 85275-45-2 ]
  • 2-fluoro-5-(2-piperazin-1-yl-phenoxy)-piperidine-1-carboxylic acid tert-butyl ester [ No CAS ]
YieldReaction ConditionsOperation in experiment
The title compound was prepared using Mitsunobu followed by Buchwald condition from <strong>[2040-90-6]2-chloro-6-fluoro phenol</strong> and racemic N-boc-3-hydroxypiperidine. MS found 380.3 M+1
  • 18
  • difluorodiol [ No CAS ]
  • [ 2040-90-6 ]
  • [ 28177-48-2 ]
  • [ 108-95-2 ]
YieldReaction ConditionsOperation in experiment
With pyridine; From the diol 3e The same procedure was employed as for the production of 4a in Example 13: performed on 0.69 g (3.12 mmol) of difluorodiol 3e, 10 equivalents of pyridine (.approx/equal.2.5 cm3), 2 g of 4A molecular sieve; 3 h 15 min reflux. After purification (as for 4a), 0.29 g of phenol 4b were isolated (eluent: ether/pentane=8/92).
  • 19
  • [ 145706-45-2 ]
  • [ 2040-90-6 ]
YieldReaction ConditionsOperation in experiment
A molecular sieve; In pyridine; EXAMPLE 13 Preparation of 2-chloro-6-fluorophenol 4a From the diol 3a 0.51 g (2.15 mmol) of diol 3a in solution in 1.65 cm3 (.approx/equal.10 eq.) of pyridine were heated to reflux for 3 h 20 min under argon atmosphere in the presence of 1.4 g of 4A molecular sieve in a 10-cm3 round bottom flask fitted with a condenser. At the end of reaction the mixture was acidified to pH 1 with 10 cm3 of 6N hydrochloric acid, was extracted with ether (5*20 cm3), was dried over magnesium sulfate and filtered, and the solvent was evaporated off. A crude solid was obtained, which was purified by flash chromatography on silica (eluent: ether/pentane ether=10/90). 0.25 g (1.7 mmol) of a white solid with a strong phenolic odor, 2-chloro-6-fluorophenol 4a, were obtained. Yld=79.5percent.
  • 20
  • [ 2040-90-6 ]
  • [ 74-88-4 ]
  • [ 53145-38-3 ]
YieldReaction ConditionsOperation in experiment
94% With potassium carbonate; In tetrahydrofuran; at 20℃; for 3h; Methyl iodide (850mul, 13.646mmol) and potassium carbonate (943mg, 6.824mmol) were added to <strong>[2040-90-6]2-chloro-6-fluorophenol</strong> (1.0g, 6.824mmol) in tetrahydrofuran (10ml) and the mixture was stirred at room temperature for 3 hours. The reaction mixture was partitioned between diethyl ether (50ml) and water (50ml). The organic phase was extracted and further washed with water (2 x 20ml) then dried over sodium sulphate and concentrated in vacuo to afford the title compound as a colourless liquid in 94percent yield, 1.03g.1HNMR(400MHz, CD3OD) delta: 3.90-3.91(s, 3H), 7.01-7.12(m, 2H), 7.18-7.21 (m, 1H)
  • 21
  • [ 2040-90-6 ]
  • [ 100-39-0 ]
  • [ 938180-34-8 ]
YieldReaction ConditionsOperation in experiment
92% With caesium carbonate; In N,N-dimethyl-formamide; for 12h; 2-Chloro-6-fluoro phenol (2.Og, 13.6mmol) was dissolved in 68m) DMF. To this solution was added CS2CO3 (6.67g, 20.5mmol) and benzyl bromide (1.78ml, 15mmol) sequentially and stirred for 12hr. The reaction mixture was diluted with EtOAc and washed with brine (3x100 m._). The organic layer was dried over ^2SO4, filtered and concentrated to give 2.97 g of product in 92percent yield
With potassium carbonate; In acetone; at 65℃; for 16h; Preparation 35 2-(BENZYLOXY)-I -CHLORO-3-FLUOROBENZENEA mixture of <strong>[2040-90-6]2-chloro-6-fluorophenol</strong> (25 g, 170 mmol), acetone (200 ml), K2CO3 (47.08 g, 340 mmol) and bensylbromide (22.31 ml, 187 mmol) was heated at 65°C for 16 h. The solution was filtered and evaporated. Water (100 ml) was added, and the solution was extracted with EtOAc. The combined organic phases were dried (Na2SO4) and evaporated to dryness to give the title compound (32.3 g). MS m/z (rel. intensity, 70 eV) 236 (M+, 2), 117 (4), 92 (8), 91 (bp), 65 (13).
  • 22
  • [ 2040-90-6 ]
  • [ 1036713-47-9 ]
  • 23
  • [ 2040-90-6 ]
  • [ 109384-19-2 ]
  • [ 1058702-84-3 ]
  • 24
  • [ 2040-90-6 ]
  • [ 1895-39-2 ]
  • [ 1136961-91-5 ]
YieldReaction ConditionsOperation in experiment
41% With potassium carbonate; In water; N,N-dimethyl-formamide; at 100℃; for 3h; 2-Chloro-6-fluorophenol (1.8 g, 12.33 mmol) was dissolved in dimethylformamide (DMF; 22 mL) and water (2.2 mL). Potassium carbonate (2.55 g, 18.5 mmol) and sodium chlorodifluoroacetate (4.7 g, 30.8 mmol) were then added and the solution was heated to 100 C. for 3 h. The cooled reaction mixture was then diluted with concentrated HCl (10 mL) and the resulting solution was stirred for 2 h. The reaction mixture was diluted with diethyl ether, washed with water, washed twice with 1M NaOH, washed once with brine, dried, filtered and concentrated under vacuum to yield the title compound (1 g, 41% yield) that was used in subsequent reactions without further purification.
  • 25
  • [ 4341-76-8 ]
  • [ 2040-90-6 ]
  • [ 1191997-67-7 ]
YieldReaction ConditionsOperation in experiment
71% With 1,8-diazabicyclo[5.4.0]undec-7-ene; In tetrahydrofuran;Reflux; Example 67 (S)-2-[4-(2-Chloro-6-fluoro-phenoxy)-2-oxo-2,5-dihydro-pyrrol-1-yl]-3-cyclohexyl-N-[1-(2-hydroxy-2-methyl-propyl)-1H-pyrazol-3-yl]-propionamide To a stirred mixture of <strong>[2040-90-6]2-chloro-6-fluoro-phenol</strong> (2.92 g, 20.0 mmol) and ethyl-2-butynoate (4.37 g, 38.90 mmol) in tetrahydrofuran (30 mL) was added 1,8-diazabicyclo[5.4.0]undec-7-ene (3.04 g, 20.0 mmol) slowly. After addition was complete the mixture was stirred at reflux for 4 h. Upon completion of the reaction the tetrahydrofuran was removed in vacuo and the residue was diluted in diethyl ether and washed first with 1N aqueous hydrochloric acid, then 10percent aqueous sodium hydroxide solution, a saturated sodium chloride solution and dried over magnesium sulfate. The crude product obtained was purified by ISCO flash chromatography (Teledyne Isco RediSep Flash Column 120 g, 0percent to 20percent ethyl acetate/hexanes) to afford, (E)-3-(2-chloro-6-fluoro-phenoxy)-but-2-enoic acid ethyl ester (3.70 g, 71percent) as a colorless oil: 1H-NMR (300 MHz, CDCl3) delta ppm 1.14-1.30 (m, 3H), 2.55 (s, 3H), 3.94-4.25 (m, 2H), 4.81 (br. s., 1H), 7.02-7.21 (m, 3H).
  • 26
  • [ 2040-90-6 ]
  • C24H24ClNO5 [ No CAS ]
  • C30H26Cl2FNO5 [ No CAS ]
  • 28
  • C12H19ClFNSi [ No CAS ]
  • [ 2040-90-6 ]
  • 29
  • [ 1228447-85-5 ]
  • [ 2040-90-6 ]
  • 30
  • [ 437-81-0 ]
  • [ 2040-90-6 ]
  • [ 1268486-37-8 ]
  • 31
  • [ 2040-90-6 ]
  • [ 1321994-07-3 ]
  • C6H3FO*ClH [ No CAS ]
  • 32
  • [ 2040-90-6 ]
  • [ 18162-48-6 ]
  • [ 1434722-77-6 ]
YieldReaction ConditionsOperation in experiment
90% With 1H-imidazole; In N,N-dimethyl-formamide; at 25℃; Alternative Synthesis of Key Intermediate 3a2-Methyl-propane-2-(R)- sulfinic acid r(R)-1-(4-chloro-2-fluoro-3-hvdroxy-phenyl)-propyl1-amideStep 1 To a 5 L flange flask fitted with a stirrer bar and nitrogen inlet/outlet was charged<strong>[2040-90-6]2-chloro-6-fluorophenol</strong> (40 g, 273 mmol, 1.0 eq), DCM (1.1 L) and imidazole (28 g, 411 mmol, 1.5 eq). Tert-Butyldimethylsilyl chloride (41.13 g, 273 mmol, 1.0 eq) was added portionwise over 30 min at T<25 °C. After 1 hour, TLC showed 5percent <strong>[2040-90-6]2-chloro-6-fluorophenol</strong> remained. Additional tert-butyldimethylsilyl chloride (2.0 g, 13.3 mmol, 0.05 eq) was added. After an additional stir of 1 hour, water (500 ml) was added and the organic layer separated. The organic layer was washed with 10percent aq. citric acid (500 ml), 10percent aq. K2C03 (500 ml), then dried over MgS04l filtered and concentrated in vacuo to give a yellow oil (68 g). The material was purified by column chromatography on silica (500 g), eluting with heptanes (100 percent). The product fractions were concentrated and THF (200 ml) used to remove residual heptanes to give (2-chloro-6- fluorophenoxy)(tert-butyl)dimethylsilane as a colourless oil (64 g, 1 H NMR >95percent, 245 mmol, 90percent yield). 1 H NMR (270 MHz, CDCI3): 7.10 (1 H, m), 6.90 (1 H, m), 6.81 (1H, m), 1.04 (9H, s), 0.23 (6H, obs d).
  • 33
  • [ 2040-90-6 ]
  • [ 1434815-68-5 ]
  • 34
  • [ 2040-90-6 ]
  • [ 1434815-73-2 ]
  • 35
  • [ 2040-90-6 ]
  • [ 1434722-50-5 ]
 

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